HHsearch 1.5 NAME c4mitG_ FAM FILE c4mitG_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4mitG_.a3m DATE Sat Sep 6 08:16:10 2014 LENG 43 match states, 43 columns in multiple alignment FILT 2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.0 EVD 0.4819 3.7153 SEQ >ss_dssp CCTTCCCCCCCSCCCCCEEEEETTEEEEESTTHHHHHHHHHCC >sa_dssp EEEEEEEEEEEEEEDECCDDECEEDEDCDCEDBEEDDEEEEEE >ss_pred CCCEEEEECCCCHHHEEEEEECCCCCCCCCHHHHHHHHHHCCC >ss_conf 9740897053012230002305778678976799999861579 >Consensus snaeliisdpxdfeqithvelgdsgltgfppewreklixaglt >c4mitG_ SNAELIISDPTDFEQITHVELGDSGLTGFPPEWREKLIKAGLT >UniRef50_B0ECF4(33-72:409) Serine/threonine protein kinase PAK, putative n=2 Tax=Entamoeba RepID=B0ECF4_ENTDI E=1e-17 s/c=2.27 id=90% cov=95% ---ELVISDPRDFEQITHVELGDSGLTGFPPEWREKLIQAGLT # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 1000 0 0 N 2 * * * * * * * * * * * 0 * * * * * * * * 2 0 * * * * * * 1000 0 0 A 3 0 * * * * * * * * * * * * * * * * * * * 3 0 * * * * * * 1000 0 0 E 4 * * * 0 * * * * * * * * * * * * * * * * 4 0 * * * * * * 1053 0 0 L 5 * * * * * * * * * 0 * * * * * * * * * * 5 0 * * * * * * 1053 0 0 I 6 * * * * * * * 1000 * * * * * * * * * 1000 * * 6 0 * * * * * * 1053 0 0 I 7 * * * * * * * 0 * * * * * * * * * * * * 7 0 * * * * * * 1053 0 0 S 8 * * * * * * * * * * * * * * * 0 * * * * 8 0 * * * * * * 1053 0 0 D 9 * * 0 * * * * * * * * * * * * * * * * * 9 0 * * * * * * 1053 0 0 P 10 * * * * * * * * * * * * 0 * * * * * * * 10 0 * * * * * * 1053 0 0 T 11 * * * * * * * * * * * * * * 1000 * 1000 * * * 11 0 * * * * * * 1053 0 0 D 12 * * 0 * * * * * * * * * * * * * * * * * 12 0 * * * * * * 1053 0 0 F 13 * * * * 0 * * * * * * * * * * * * * * * 13 0 * * * * * * 1053 0 0 E 14 * * * 0 * * * * * * * * * * * * * * * * 14 0 * * * * * * 1053 0 0 Q 15 * * * * * * * * * * * * * 0 * * * * * * 15 0 * * * * * * 1053 0 0 I 16 * * * * * * * 0 * * * * * * * * * * * * 16 0 * * * * * * 1053 0 0 T 17 * * * * * * * * * * * * * * * * 0 * * * 17 0 * * * * * * 1053 0 0 H 18 * * * * * * 0 * * * * * * * * * * * * * 18 0 * * * * * * 1053 0 0 V 19 * * * * * * * * * * * * * * * * * 0 * * 19 0 * * * * * * 1053 0 0 E 20 * * * 0 * * * * * * * * * * * * * * * * 20 0 * * * * * * 1053 0 0 L 21 * * * * * * * * * 0 * * * * * * * * * * 21 0 * * * * * * 1053 0 0 G 22 * * * * * 0 * * * * * * * * * * * * * * 22 0 * * * * * * 1053 0 0 D 23 * * 0 * * * * * * * * * * * * * * * * * 23 0 * * * * * * 1053 0 0 S 24 * * * * * * * * * * * * * * * 0 * * * * 24 0 * * * * * * 1053 0 0 G 25 * * * * * 0 * * * * * * * * * * * * * * 25 0 * * * * * * 1053 0 0 L 26 * * * * * * * * * 0 * * * * * * * * * * 26 0 * * * * * * 1053 0 0 T 27 * * * * * * * * * * * * * * * * 0 * * * 27 0 * * * * * * 1053 0 0 G 28 * * * * * 0 * * * * * * * * * * * * * * 28 0 * * * * * * 1053 0 0 F 29 * * * * 0 * * * * * * * * * * * * * * * 29 0 * * * * * * 1053 0 0 P 30 * * * * * * * * * * * * 0 * * * * * * * 30 0 * * * * * * 1053 0 0 P 31 * * * * * * * * * * * * 0 * * * * * * * 31 0 * * * * * * 1053 0 0 E 32 * * * 0 * * * * * * * * * * * * * * * * 32 0 * * * * * * 1053 0 0 W 33 * * * * * * * * * * * * * * * * * * 0 * 33 0 * * * * * * 1053 0 0 R 34 * * * * * * * * * * * * * * 0 * * * * * 34 0 * * * * * * 1053 0 0 E 35 * * * 0 * * * * * * * * * * * * * * * * 35 0 * * * * * * 1053 0 0 K 36 * * * * * * * * 0 * * * * * * * * * * * 36 0 * * * * * * 1053 0 0 L 37 * * * * * * * * * 0 * * * * * * * * * * 37 0 * * * * * * 1053 0 0 I 38 * * * * * * * 0 * * * * * * * * * * * * 38 0 * * * * * * 1053 0 0 K 39 * * * * * * * * 1000 * * * * 1000 * * * * * * 39 0 * * * * * * 1053 0 0 A 40 0 * * * * * * * * * * * * * * * * * * * 40 0 * * * * * * 1053 0 0 G 41 * * * * * 0 * * * * * * * * * * * * * * 41 0 * * * * * * 1053 0 0 L 42 * * * * * * * * * 0 * * * * * * * * * * 42 0 * * * * * * 1053 0 0 T 43 * * * * * * * * * * * * * * * * 0 * * * 43 0 * * 0 * * * 1053 0 0 //