HHsearch 1.5 NAME c4mitE_ FAM FILE c4mitE_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4mitE_.a3m DATE Sat Sep 6 08:16:49 2014 LENG 40 match states, 40 columns in multiple alignment FILT 2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.1 EVD 0.5118 4.7362 SEQ >ss_dssp CCCCCCCCSCCCCCEEEEETTEEEEESTTHHHHHHHHHCC >sa_dssp EEEEEEEEEEEDECCDDECEEDDDCDCEDBEEDDEEEEEE >ss_pred CEEECCCCCHHHHHEEEECCCCCCCCCHHHHHHHHHHCCC >ss_conf 9120353012340001205778678976799999961479 >Consensus eliisdpxdfeqithvelgdsgltgfppewreklixaglt >c4mitE_ ELIISDPTDFEQITHVELGDSGLTGFPPEWREKLIKAGLT >UniRef50_B0ECF4(33-72:409) Serine/threonine protein kinase PAK, putative n=2 Tax=Entamoeba RepID=B0ECF4_ENTDI E=3e-17 s/c=2.24 id=90% cov=102% ELVISDPRDFEQITHVELGDSGLTGFPPEWREKLIQAGLT # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * E 1 * * * 0 * * * * * * * * * * * * * * * * 1 0 * * * * * * 1053 0 0 L 2 * * * * * * * * * 0 * * * * * * * * * * 2 0 * * * * * * 1053 0 0 I 3 * * * * * * * 1000 * * * * * * * * * 1000 * * 3 0 * * * * * * 1053 0 0 I 4 * * * * * * * 0 * * * * * * * * * * * * 4 0 * * * * * * 1053 0 0 S 5 * * * * * * * * * * * * * * * 0 * * * * 5 0 * * * * * * 1053 0 0 D 6 * * 0 * * * * * * * * * * * * * * * * * 6 0 * * * * * * 1053 0 0 P 7 * * * * * * * * * * * * 0 * * * * * * * 7 0 * * * * * * 1053 0 0 T 8 * * * * * * * * * * * * * * 1000 * 1000 * * * 8 0 * * * * * * 1053 0 0 D 9 * * 0 * * * * * * * * * * * * * * * * * 9 0 * * * * * * 1053 0 0 F 10 * * * * 0 * * * * * * * * * * * * * * * 10 0 * * * * * * 1053 0 0 E 11 * * * 0 * * * * * * * * * * * * * * * * 11 0 * * * * * * 1053 0 0 Q 12 * * * * * * * * * * * * * 0 * * * * * * 12 0 * * * * * * 1053 0 0 I 13 * * * * * * * 0 * * * * * * * * * * * * 13 0 * * * * * * 1053 0 0 T 14 * * * * * * * * * * * * * * * * 0 * * * 14 0 * * * * * * 1053 0 0 H 15 * * * * * * 0 * * * * * * * * * * * * * 15 0 * * * * * * 1053 0 0 V 16 * * * * * * * * * * * * * * * * * 0 * * 16 0 * * * * * * 1053 0 0 E 17 * * * 0 * * * * * * * * * * * * * * * * 17 0 * * * * * * 1053 0 0 L 18 * * * * * * * * * 0 * * * * * * * * * * 18 0 * * * * * * 1053 0 0 G 19 * * * * * 0 * * * * * * * * * * * * * * 19 0 * * * * * * 1053 0 0 D 20 * * 0 * * * * * * * * * * * * * * * * * 20 0 * * * * * * 1053 0 0 S 21 * * * * * * * * * * * * * * * 0 * * * * 21 0 * * * * * * 1053 0 0 G 22 * * * * * 0 * * * * * * * * * * * * * * 22 0 * * * * * * 1053 0 0 L 23 * * * * * * * * * 0 * * * * * * * * * * 23 0 * * * * * * 1053 0 0 T 24 * * * * * * * * * * * * * * * * 0 * * * 24 0 * * * * * * 1053 0 0 G 25 * * * * * 0 * * * * * * * * * * * * * * 25 0 * * * * * * 1053 0 0 F 26 * * * * 0 * * * * * * * * * * * * * * * 26 0 * * * * * * 1053 0 0 P 27 * * * * * * * * * * * * 0 * * * * * * * 27 0 * * * * * * 1053 0 0 P 28 * * * * * * * * * * * * 0 * * * * * * * 28 0 * * * * * * 1053 0 0 E 29 * * * 0 * * * * * * * * * * * * * * * * 29 0 * * * * * * 1053 0 0 W 30 * * * * * * * * * * * * * * * * * * 0 * 30 0 * * * * * * 1053 0 0 R 31 * * * * * * * * * * * * * * 0 * * * * * 31 0 * * * * * * 1053 0 0 E 32 * * * 0 * * * * * * * * * * * * * * * * 32 0 * * * * * * 1053 0 0 K 33 * * * * * * * * 0 * * * * * * * * * * * 33 0 * * * * * * 1053 0 0 L 34 * * * * * * * * * 0 * * * * * * * * * * 34 0 * * * * * * 1053 0 0 I 35 * * * * * * * 0 * * * * * * * * * * * * 35 0 * * * * * * 1053 0 0 K 36 * * * * * * * * 1000 * * * * 1000 * * * * * * 36 0 * * * * * * 1053 0 0 A 37 0 * * * * * * * * * * * * * * * * * * * 37 0 * * * * * * 1053 0 0 G 38 * * * * * 0 * * * * * * * * * * * * * * 38 0 * * * * * * 1053 0 0 L 39 * * * * * * * * * 0 * * * * * * * * * * 39 0 * * * * * * 1053 0 0 T 40 * * * * * * * * * * * * * * * * 0 * * * 40 0 * * 0 * * * 1053 0 0 //