HHsearch 1.5 NAME c4me7E_ FAM FILE c4me7E_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4me7E_.a3m DATE Sat Oct 26 08:26:08 2013 LENG 78 match states, 78 columns in multiple alignment FILT 16 out of 20 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.9 EVD 0.4253 0.4419 SEQ >ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTC >sa_dssp EEEEEEEEDDEEDCEECCDCBEEDECDDEDBCDDEEEEEDDDEDDDEDECDEDDCEEEDDEDEEEDDEEDEEEEEEEE >ss_pred CCCEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC >ss_conf 984168744399999999998304589899999999999998776888999771341012323888786543455219 >Consensus xxxxIxisLPxxLlxEvDxivxxExxnRsexireAxxxYixErkkrxiRexMkrGYxEMAxINLxiAxExxxvExEax >c4me7E_ ARTEXKISLPENLVAELDGVAXREKRSRNELISQAVRAYVSERTTRHNRDLXRRGYXEXAKINLNISSEAHFAECEAE >UniRef50_B8G285(9-80:92) Putative transcriptional regulator, CopG family n=4 Tax=Clostridia RepID=B8G285_DESHD E=4e-09 s/c=0.87 id=45% cov=94% ------ISLPENLLAEVDDVVTLENRNRSEFIREAINSVLHERRKRGIREQMRKGYEEMAQLNLAIARELFLAEEEVQ >UniRef50_A8W0C8(6-82:92) Putative transcriptional regulator, CopG family n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8W0C8_9BACI E=6e-14 s/c=1.02 id=40% cov=100% -TKKISVNLPQHLVHEIDALTEGEGCNRDELIHRELMRFVEIQRTKQIREEMERGYMEMAKINLNIASESFLVEEEAE >UniRef50_B0TE83(8-80:89) Helix-turn-helix domain protein, copg family, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE83_HELMI E=2e-12 s/c=1.01 id=45% cov=95% -----QVTLPESLLDELDRVLMAEKMNRSQLIREAVNLYMSEHKRKVLRDQMRRGYAEMARINLELALEGFVAEVDVE >UniRef50_A0AH05(7-83:92) Complete genome n=16 Tax=Listeria RepID=A0AH05_LISW6 E=4e-11 s/c=0.90 id=40% cov=100% -RTIISVELTQEMVQELDVVVEKEKMGRSEVIMEATQQFLQEKRARELRDEMERGYAEMATINFAIACECTHVEAEAE >UniRef50_C9XS65(5-79:95) CopG-family transcriptional regulator n=4 Tax=Clostridium RepID=C9XS65_CLODC E=6e-13 s/c=1.00 id=22% cov=97% SKEKIEVTLPDSLISEVDSIVQMENSNREDFAKAAFQFYITQKKKIHIKESMKTGYREMGQINLSLAELGMTVEE--- >UniRef50_C3KV30(4-74:107) Toxin-antitoxin system, antitoxin component n=15 Tax=Clostridium RepID=C3KV30_CLOB6 E=7e-11 s/c=0.96 id=26% cov=87% -----VINLPNTLYNEINEIIKKDSQKRSEFFREAIILYIEERKKQIKMDEMKKGYIEMANINRDYAEQGFE------ >UniRef50_Q67K80(1-66:72) Putative uncharacterized protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67K80_SYMTH E=1e-09 s/c=0.97 id=43% cov=81% --------MPASLLEQVDGLAALERTDRDALIQEAVRIYVEERKKRDMREQLRRGYREMSRINLTLAEEG-------- >UniRef50_Q0AVS6(21-79:89) Putative transcriptional regulator, CopG family n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AVS6_SYNWW E=2e-09 s/c=1.07 id=31% cov=76% -------------------LTLEESKNRSQIVREAIKFYLGERKRLMAIEQMKKGYLEMAEINLNIACKNSGVEEEA- >UniRef50_C8WRY3(24-71:82) Putative transcriptional regulator, CopG family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRY3_ALIAD E=3e-07 s/c=1.17 id=41% cov=63% -----------------------------DIVREALRMYVSRREPGDLRETMQRGYQEMAPLNLRIACEAFLVEQEA- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 687 * * * * * * * * * * * * * * 1400 * * * * 1 0 * * * * * * 1818 0 0 R 2 * * * * * * * * 2433 * * * * * 1759 * 945 * * * 2 0 * * * * * * 2466 0 0 T 3 * * * 1647 * * * * 1928 * * * * * * * 1259 * * * 3 0 * * * * * * 2466 0 0 E 4 * * * 1992 * * * 2587 1597 * * * * * 1991 * * * * * 4 0 * * * * * * 2466 0 0 X 5 * * * * * * * 0 * * * * * * * * * * * * 5 0 * * * * * * 2360 0 0 K 6 * * * 2838 * * * * 3336 * 2462 * * 3215 * 2044 * 2124 * * 6 0 * * * * * * 2793 0 0 I 7 * * * * * * * 853 * * * * * * * * * 1164 * * 7 0 * * * * * * 2862 0 0 S 8 * * * 3308 * * * * * * * 2249 * * 3890 1188 2455 * * * 8 0 * * * * * * 2862 0 0 L 9 * * * * * * * * * 127 3566 * * * * * * * * * 9 0 * * * * * * 2875 0 0 P 10 * * * * * * * * * * * * 145 * * * 3390 * * * 10 0 * * * * * * 2875 0 0 E 11 3566 * 2345 1709 * * * * * * * 3169 * 1728 * * * * * * 11 0 * * * * * * 2875 0 0 N 12 4003 * * 3390 * * 2796 * * * * 2102 * * * 1498 3169 * * * 12 0 * * * * * * 2875 0 0 L 13 * * * * * * * * * 145 3390 * * * * * * * * * 13 0 * * * * * * 2875 0 0 V 14 * * * * * * * 3387 * 1062 * * * * * * * 1671 * 3169 14 0 * * * * * * 2875 0 0 A 15 2491 * 3850 2329 * * 3476 * 4467 * * 3169 * 2742 * 3387 4003 * * * 15 0 * * * * * * 2875 0 0 E 16 * * * 127 * * * * * * * * * 3566 * * * * * * 16 0 * * * * * * 2875 0 0 L 17 * * * * * * * 1946 * 1768 * * * * * * * 1162 * * 17 0 * * * * * * 2875 0 0 D 18 * * 170 * * * * * * * * 3169 * * * * * * * * 18 0 * * * * * * 2875 0 0 G 19 3476 * 3996 3169 * 1679 * * * * * 4158 * * 3850 2828 * 2664 * * 19 0 * * * * * * 2875 0 0 V 20 * * * * * * * 1548 * 1597 * * * * * * * 1611 * * 20 0 * * * * * * 2936 0 0 A 21 2372 * * * * * * 2687 * 3986 * * * * * * 2782 1174 * * 21 0 * * * * * * 2936 0 0 X 22 2892 * * 2062 * * * * 2543 3985 3860 4373 * 2751 * 4026 3966 * * * 22 0 * * * * * * 2896 0 0 R 23 3986 * * 3167 * 3555 * * 2035 2410 2928 4168 * 4141 3952 * * * * * 23 0 * * * * * * 2936 0 0 E 24 * * 3265 158 * * * * * * * * * * * * * * * * 24 0 * * * * * * 2936 0 0 K 25 * * * * * 3555 * * 1499 * * 2281 * 4168 2886 2606 * * * * 25 0 * * * * * * 2936 0 0 R 26 * 2829 * * * 4141 * 4573 4052 * 2720 * * 3265 2569 2830 3569 4292 * * 26 0 * * * * * * 2936 0 0 S 27 * * 3569 * * 3495 * * 3265 * * 730 * * * 3056 * * * * 27 0 * * * * * * 2936 0 0 R 28 * * * * * * * * * * * * * * 0 * * * * * 28 0 * * * * * * 2936 0 0 N 29 * * 2562 3484 * * * * * * * 3043 * * * 690 * * * * 29 0 * * * * * * 2936 0 0 E 30 3843 * 2348 727 * * * * * * * * * 2948 * * * * * * 30 0 * * * * * * 3041 0 0 L 31 * * * * 1081 * * 3012 * 1600 * * * * * * * 3771 * * 31 0 * * * * * * 3041 0 0 I 32 3481 * * * 3437 * * 734 * * * * * * * * * 2206 * * 32 0 * * * * * * 3041 0 0 S 33 * * * * * * 3589 * 3481 * 3771 * * 3843 813 3950 * * * 4306 33 0 * * * * * * 3041 0 0 Q 34 3481 * * 716 * * * * 4206 * * * * 2606 3589 * * * * * 34 0 * * * * * * 3041 0 0 A 35 125 * * 3589 * * * * * * * * * * * * * * * * 35 0 * * * * * * 3041 0 0 V 36 * * * * 3481 * * 2191 * 2843 2108 * * * * * 3014 2349 * * 36 0 * * * * * * 3041 0 0 R 37 * * * * * * 4351 3437 2017 * 3589 3048 * 2619 2030 * * * * * 37 0 * * * * * * 3041 0 0 A 38 3950 * * * 2669 * * 3843 * 1372 3227 * * 3771 3589 4084 * * * * 38 0 * * * * * * 3041 0 0 Y 39 * * * * 2678 * * * * * * * * * * * * 4084 * 350 39 0 * * * * * * 3041 0 0 V 40 * * * * * * * 1267 * 2006 4014 * * * * * * 1869 * * 40 0 * * * * * * 3041 0 0 S 41 4381 * * 1740 * 3885 4084 * 4351 * * * * 3771 3490 2451 2923 * * * 41 0 * * * * * * 3041 0 0 E 42 * * * 375 * * * 3589 * * * * * 3481 4151 * * * * * 42 0 * * * * * * 3041 0 0 R 43 * * * * * * 4014 * 2313 * * * * 3589 613 * * * * * 43 0 * * * * * * 3041 0 0 T 44 * * * 4151 * * * * 808 * * * * * 1699 * 3950 * * * 44 0 * * * * * * 3041 0 0 T 45 3771 * * * * * * * 1107 * * * 4151 * 1952 * 2759 * * * 45 0 * * * * * * 3041 0 0 R 46 * * * * * 4151 * 2965 2786 3885 * * * 3437 970 * * * * * 46 0 * * * * * * 3041 0 0 H 47 * * 2989 2592 * 4084 2697 3437 * 4381 3885 4563 * 2904 * * 4351 4014 * * 47 0 * * * * * * 3041 0 0 N 48 3885 * * * * * * 1226 3437 2062 3209 3950 * * * * * * * * 48 0 * * * * * * 3041 0 0 R 49 * * * * * * * 3885 3481 * 3437 * * * 414 * * * * * 49 0 * * * * * * 3041 0 0 D 50 * * 1597 579 * * * * * * * * * * * * * * * * 50 0 * * * * * * 3041 0 0 L 51 4306 * * 2008 * * * * 4700 3950 * * * 1520 4206 3481 3248 * * * 51 0 * * * * * * 3041 0 0 X 52 * * * * * * * * * 3107 178 * * * * * * * * * 52 0 * * * * * * 2989 0 0 R 53 * * * 2678 * * * * 1402 * * * * 2648 1709 * * * * * 53 0 * * * * * * 3041 0 0 R 54 * * * * * * * * 1291 * * * * * 995 * 3481 * * * 54 0 * * * * * * 3041 0 0 G 55 * * * * * 0 * * * * * * * * * * * * * * 55 0 * * * * * * 3041 0 0 Y 56 * * * * * * * * * * * * * * * * * * * 0 56 0 * * * * * * 3041 0 0 X 57 2718 * * 3996 * * * 3380 * 2943 2307 * * 2505 2466 * * * * * 57 0 * * * * * * 3052 0 0 E 58 * * * 0 * * * * * * * * * * * * * * * * 58 0 * * * * * * 3119 0 0 X 59 * * * * * * * * * * 0 * * * * * * * * * 59 0 * * * * * * 3052 0 0 A 60 270 * * * * 3386 * * * * * * * * * 3734 * * * * 60 0 * * * * * * 3119 0 0 K 61 * * * 3828 * * * * 1714 * * 3435 3281 2694 2849 4096 3687 * * * 61 0 * * * * * * 3119 0 0 I 62 * * * * * * * 265 * 2575 * * * * * * * * * * 62 0 * * * * * * 3119 0 0 N 63 * * * * * * * * * * * 0 * * * * * * * * 63 0 * * * * * * 3119 0 0 L 64 * * * * 3687 * * * * 269 * * * * 3435 * * * * * 64 0 * * * * * * 3119 0 0 N 65 2080 * 3435 3034 * * * * * * * 1887 * * 4160 2760 3734 * * * 65 0 * * * * * * 3119 0 0 I 66 * * * * * * * 935 * 1580 4323 * * * * * * * * 3435 66 0 * * * * * * 3119 0 0 S 67 102 * * * * * * * * * * * * * * 3874 * * * * 67 0 * * * * * * 3119 0 0 S 68 * 2293 * 1925 * * * 4237 * 3975 * 4096 * * 4085 1990 * 4413 * * 68 0 * * * * * * 3119 0 0 E 69 * * * 432 * * * * 3828 3386 * * * 3435 * * * * * * 69 0 * * * * * * 3119 0 0 A 70 1814 3687 * * * 1613 * * * 4085 * 3091 * * * 3614 * * * 4237 70 0 * * * * * * 3119 0 0 H 71 * * * * 1035 * 3737 * * 4002 3294 * * 3984 * 3753 3596 * * 4256 71 0 * * * * * * 3002 0 0 F 72 * * 4256 2688 3737 2973 3596 * * 1885 * * * * 3984 * 3294 3806 * * 72 0 * * * * * * 3002 0 0 A 73 1241 * * * * * * 3854 * * * * * * * * * 977 * * 73 0 * * * * * * 2880 0 0 E 74 * * * 0 * * * * * * * * * * * * * * * * 74 0 * * * * * * 2880 0 0 C 75 3431 3634 * 1249 * * * * * * * 2346 * 3906 * * * 3681 * 3952 75 0 * * * * * * 2880 0 0 E 76 * * 3304 154 * * * * * * * * * * * * * * * * 76 0 * * * * * * 2607 0 0 A 77 441 * * * * * * * * * * * * * * * * 1926 * * 77 0 * * * * * * 2607 0 0 E 78 * * 2142 889 * * * * * * * * * 2098 * * * * * * 78 0 * * 0 * * * 2321 0 0 //