HHsearch 1.5 NAME c4l8iA_ FAM FILE c4l8iA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4l8iA_.a3m DATE Sat Feb 15 08:20:41 2014 LENG 114 match states, 114 columns in multiple alignment FILT 114 out of 157 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.5 EVD 0.3812 -2.2656 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHC >sa_dssp ECDEBDCEBDCDBDEBCCDACEDBDDCDEEBEDDEECDDEBEECBDEADCCAEEBCCCADEDBEDBCDDAEECECEEEDCEEBCDDAEECBDDBDEDADD CBDEADECCEDCDE >ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHCC >ss_conf 9457999999999856777674445515577378489999999999999999999999999999999999846999788999999999999999999999 99999999874249 >Consensus xxxdxxkxiexxixxxxxxlxxxxDxxxIrixmPxlTeErRkelvKxxkkxxExaKvaIRniRrdaxxxlKkxeisEDdxkxxexeIQkltdxyikkidx llxxKEaxxxxxxx >c4l8iA_ SMSDIRKDLEERFDKLVEALKNKVDKMKAAFRMDQFHEERMKDWFKDLRKEVEQMRRAVRNYASEALSKINDLPITNDDKKLASNDVLKLVAEVWKKLEA ILADVEAWFTHHHH >UniRef50_C1BRN9(143-257:260) Ribosome recycling factor, mitochondrial n=1 Tax=Caligus rogercresseyi RepID=C1BRN9_9MAXI E=0.0009 s/c=0.39 id=15% cov=24% ----------------------------------------------------------------------------KDKQHMVEEIIRSVANDFAHRAEE IL------------ >UniRef50_Q8T0M6(144-251:254) GH21184p n=14 Tax=Diptera RepID=Q8T0M6_DROME E=4e-17 s/c=0.82 id=19% cov=61% -------------------------------------KEHRENLSKNAKALFVKYRDAIRGVQNEHIRKLKKQpELGKDDAFAAQAQVTAIADRFISEAD KLLASKQ-------- >UniRef50_Q4A7I9(80-179:186) Ribosome recycling factor n=5 Tax=Mycoplasma RepID=Q4A7I9_MYCH7 E=5e-11 s/c=0.69 id=15% cov=58% -------------------------------------HQKRQEAIHKLKKIHEEGKVRMRLIRQDINKLIKKEEFSEDLEKDYLGQVQKNINSEIEKIDQ LF------------ >UniRef50_Q0U1F7(703-808:819) Putative uncharacterized protein n=2 Tax=Pleosporineae RepID=Q0U1F7_PHANO E=0.0002 s/c=0.45 id=20% cov=22% -----------------------------------------------------------------------------DDLQKAKKRMEEVVKKGHTEIKR I------------- >UniRef50_Q6NQM0(156-266:267) At3g01800 n=14 Tax=Magnoliophyta RepID=Q6NQM0_ARATH E=3e-23 s/c=0.98 id=21% cov=96% ---DTVKELEKAIVASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVVKQSIRRARQKALDTIKKAGSslPKDEVKRLEKEVDELTKKFVKSA EDMCKSKEKEITE--- >UniRef50_B8NYQ1(771-882:886) Hsp70 chaperone (HscA), putative n=7 Tax=Eukaryota RepID=B8NYQ1_ASPFN E=5e-13 s/c=0.67 id=19% cov=23% ------------------------------------------------KAAMEKATAAVRDSRGSVHKRLQDM--------------------------- -------------- >UniRef50_C9ZQJ8(230-323:342) Putative uncharacterized protein n=4 Tax=Trypanosoma RepID=C9ZQJ8_TRYBG E=2e-10 s/c=0.71 id=13% cov=55% ----------QRVTRFDGTLQVSKEQQKIKITMPPITTARRQKAVEEIQLVVSSFKNKVKQVRTQASRALQE---------------------------- -------------- >UniRef50_Q6BLC3(136-255:257) Ribosome-recycling factor, mitochondrial n=4 Tax=Saccharomycetales RepID=RRF1_DEBHA E=2e-10 s/c=0.55 id=23% cov=27% ----------------------------------------------------------------------------SDAEEKVFKDFEKLHKQYTDKLTE VFKSAE-------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 1000 0 0 M 2 * * * * * * * * * * 0 * * * * * * * * * 2 0 * * * * * * 1662 0 0 S 3 * * * * * * * * * * * * 1056 * * 946 * * * * 3 0 * * * * * * 1662 0 0 D 4 * * 0 * * * * * * * * * * * * * * * * * 4 0 * * * * * * 2254 0 0 I 5 * * * * * * * 851 * * * * * * * * 2666 1796 * * 5 0 * * * * * * 2962 0 0 R 6 * * * * * * * * 2618 2023 2070 * * * 2356 * * 2666 * * 6 0 * * * * * * 2962 0 0 K 7 * * * * * * 3668 * 118 * * * * * * * * * * * 7 0 * * * * * * 3135 0 0 D 8 2291 * 1055 2264 * * * * * * * 3236 * * * * * * * * 8 0 * * * * * * 3135 0 0 L 9 * * * * * * * 661 * 1444 * * * * * * * * * * 9 0 * * * * * * 3135 0 0 E 10 * * * 162 * * * 3236 * * * * * * * * * * * * 10 0 * * * * * * 3135 0 0 E 11 * * * 2103 * 3190 * * 1068 * * * * 3272 * * * 3699 * * 11 167 * 3190 * * * * 3404 0 0 R 12 900 * * * * * * * * * * * * 3523 1874 3261 * * * * 12 0 * * * * * 0 3199 0 1000 F 13 * * * * 2661 * * 683 * 3261 * * * * * * * 3125 * * 13 0 * * * * 0 * 3199 0 1000 D 14 * * 2837 * * * * * * 2792 3699 3430 * 2168 * * 2230 3181 * * 14 0 * * * * * * 3404 0 0 K 15 1918 * * * * * * * 1425 * * 3315 * 4093 2836 3970 * * * * 15 0 * * * * * * 3855 0 0 L 16 3315 * * * 2836 * * * * 2153 3541 * * * * 1156 * * * * 16 0 * * * * * * 3855 0 0 V 17 * * 1646 * * 4261 * * * * * 2703 2453 * * 3970 * 2131 * * 17 0 * * * * * * 3855 0 0 E 18 * * * 2967 * 2077 * * * 1156 * * * * * * * * * 2424 18 0 * * * * * * 3855 0 0 A 19 3118 * 3887 * * 968 * * * * * * * * * 3514 3005 3411 * * 19 0 * * * * * * 3904 0 0 L 20 * * * * * * * 4222 * 741 3887 * * * * * * 1834 * * 20 0 * * * * * * 3904 0 0 K 21 * * * * * * * * 3118 * * 1879 3411 2112 3514 4397 2712 * * * 21 0 * * * * * * 3904 0 0 N 22 * * * 3514 * * * 3887 * * * 3118 968 3411 * * * 3005 * * 22 0 * * * * * * 3904 0 0 K 23 * * 3514 * * * * * 1576 * * 4397 * 2761 * 1669 * 3887 * * 23 0 * * * * * * 3904 0 0 V 24 3648 * 4389 * * * * 3364 3158 3914 * 2812 * * * 4931 4560 1398 * * 24 0 * * * * * * 4072 0 0 D 25 * * 305 2853 * * * * * * * * * * * 4259 * * * * 25 0 * * * * * * 4232 0 0 K 26 3215 * 4175 * * 1088 * * 2996 * * 4533 * 3415 * 3260 * * * * 26 0 * * * * * * 4387 0 0 M 27 4660 * 3633 4963 4472 * * * 4673 3230 3639 * * 1820 3868 5346 3336 3304 * * 27 0 * * * * * * 4387 0 0 K 28 5290 * * 4287 * * * 5046 1974 3707 5085 4472 * 4660 4162 4963 2311 2660 * * 28 0 * * * * * * 4387 0 0 A 29 3639 * * * * * * 493 * 3309 * * * * * * * 3207 * * 29 0 * * * * * * 4387 0 0 A 30 3639 * * * * * * * 2624 * * * * 4235 852 4287 4533 4162 * * 30 0 * * * * * * 4387 0 0 F 31 4231 * * * 3062 * * 1023 * 2137 * * * * * * * 3219 * * 31 63 * 4548 * * * * 4600 0 0 R 32 5407 * * * * * * 4432 3252 * * 3775 2023 4182 2519 2674 3503 4984 * * 32 0 * * * * * 0 4542 0 1000 M 33 * * * * 3591 * * 1765 * 2326 1391 * * * * * * 4566 * * 33 0 * * * * 0 * 4415 0 1000 D 34 4933 * 4075 * * * * * * * * * 202 4699 * * * * * * 34 0 * * * * * * 4434 0 0 Q 35 3899 * 5294 2345 * * * 4795 2903 5302 6118 * 2250 1915 * 5284 * * * * 35 0 * * * * * * 4473 0 0 F 36 * * * * 4144 * * 4155 * 847 2515 * 4693 * * * 4979 3541 * * 36 0 * * * * * * 4375 0 0 H 37 * * * * * * 4144 * * * * 3513 * * * 3360 399 * * * 37 0 * * * * * * 4375 0 0 E 38 6740 * * 956 * 5666 5569 * 2870 6189 * * * 2790 4967 5291 4130 5337 * * 38 0 * * * * * * 4700 0 0 E 39 4089 * 3385 342 * * * * * * * * * 4717 * 5764 * * * * 39 0 * * * * * * 4927 0 0 R 40 5555 * * 6776 * 6084 3369 * 5171 * 4433 6511 * 4204 932 5311 3171 5314 * 4912 40 0 * * * * * * 4927 0 0 M 41 * * * * * * * 5783 5028 6593 5007 * * * 189 * * 4941 * * 41 0 * * * * * * 4927 0 0 K 42 4637 * * 2864 6140 6685 6082 * 1139 4499 * 5917 * 2712 3516 * 6560 * * 5764 42 0 * * * * * * 4927 0 0 D 43 3722 * 2836 1065 * 4941 * * 3740 * 6266 3042 * 4660 * 5341 * * * * 43 0 * * * * * * 4927 0 0 W 44 4386 * 6603 * 4409 * * 3215 * 1030 3369 5973 * * * 4729 5618 4558 4729 4427 44 0 * * * * * * 4927 0 0 F 45 2895 4995 * * 5007 6899 * 2898 6560 3534 5477 * * 7289 * 4032 4752 1196 * * 45 0 * * * * * * 4927 0 0 K 46 5626 * * 5318 * * 5875 * 269 * * 6483 * * 3876 5865 * 6488 * * 46 0 * * * * * * 5061 0 0 D 47 3746 * 3512 3875 * * 6482 4228 3230 2389 5241 4168 * 2696 5653 4457 5449 3592 * * 47 0 * * * * * * 5061 0 0 L 48 1417 5424 * * * * * 2988 * 2234 * * * * * * 5150 2087 * * 48 0 * * * * * * 5061 0 0 R 49 4186 * 5445 7055 * 4659 4416 * 976 * * 4066 * 4337 2903 4830 4925 6795 * * 49 0 * * * * * * 5267 0 0 K 50 3188 * 6387 3413 6227 5326 5588 7190 1371 4785 * 4883 * 3655 4330 3910 4260 6161 * * 50 0 * * * * * * 5279 0 0 E 51 3766 * 6608 2920 4532 5986 6655 3089 3955 3382 3316 5041 * 3621 5401 5301 5611 3587 * 3787 51 0 * * * * * * 5279 0 0 V 52 1931 4770 * 6589 4372 2645 5760 * * 3585 4042 6804 * 6576 * 3172 4074 3243 * 5335 52 0 * * * * * * 5279 0 0 E 53 * * 4376 241 * * * 4920 * * * 5356 * * * 5129 * 5676 * * 53 0 * * * * * * 5605 0 0 Q 54 4370 * 2734 1883 * 6313 5995 6016 2273 6444 * 4882 * 3274 4501 4076 6022 6384 * * 54 0 * * * * * * 5605 0 0 M 55 1307 5077 6651 * 4177 2946 5219 5924 7257 * 5300 6632 * * * 3461 3521 5626 * 3512 55 0 * * * * * * 5605 0 0 R 56 5755 * * * * * 5924 6632 901 * * * * * 1450 4788 5847 * * * 56 0 * * * * * * 5605 0 0 R 57 4953 * 3853 6169 * * 4995 2093 5637 * * 3656 * 3509 5302 5815 5473 1451 * * 57 25 5850 * 2322 322 * * 5617 1000 0 A 58 1524 * * 4405 6302 4070 6118 6331 4384 6689 * 4201 * 4087 3984 2098 5726 5679 * * 58 0 * * * * * * 5617 0 0 V 59 5216 * * * * * * 1329 * 2373 4666 * * * * * 6305 1600 * * 59 0 * * * * * * 5617 0 0 R 60 6308 * * * * 5850 * * 4116 * * * * * 155 * 6157 * * * 60 0 * * * * * * 5617 0 0 N 61 4597 * 3784 * 6869 4355 4491 * 3923 5996 * 1068 * 4207 4223 3888 5455 5184 * * 61 0 * * * * * * 5350 0 0 Y 62 2837 * * 6662 * * 5886 1461 6675 3877 * * * 5775 * 5219 6449 1679 * 5428 62 0 * * * * * * 5484 0 0 A 63 5428 * * * * * 5775 * * * * * * 4778 117 * * * * * 63 0 * * * * * * 5484 0 0 S 64 4380 * * * * 3908 4222 * 3696 * * 4338 * 3001 1105 4341 3918 * * * 64 0 * * * * * * 5484 0 0 E 65 3872 * 1296 2365 * * 4801 * 2996 * * 4043 * 4369 5348 6145 * 5558 * * 65 0 * * * * * * 5484 0 0 A 66 1333 4946 7145 5934 7056 2991 5780 3355 * 4709 4910 * * 5777 * 4105 3999 4314 * 4742 66 0 * * * * * * 5484 0 0 L 67 * * * * 5298 * 4593 2780 4270 2528 2589 1929 * 4839 5628 5425 * 4183 * * 67 36 5335 * 1943 435 * * 5484 1819 0 S 68 5024 * 2179 2823 * 6957 5310 6427 1589 * * 4156 * 4341 4319 4186 5689 * * * 68 59 4631 * 1307 747 * * 5484 1574 0 K 69 3091 * 3752 2890 * 6414 4932 6915 1709 4098 5128 5326 * 4127 4801 3708 6044 5782 * * 69 25 5863 * 2000 415 * * 5484 1485 0 I 70 3897 * * 6944 5113 * * 1512 * 1249 5089 * * * * * * 3541 * 6773 70 186 3046 * 1683 538 * * 5404 3512 0 N 71 * 5497 4149 3824 * 5022 * * 607 * * 3674 * 4328 4811 * * * * * 71 52 4817 * 1279 767 * * 5406 2361 0 D 72 4749 * 2899 3866 * 4464 5767 * 1033 * * 3863 * 5606 4078 4465 7825 6710 * * 72 64 4526 * 1844 471 * * 5373 1921 0 L 73 3924 * 3706 4661 * 4843 5256 5366 2026 2255 3359 * * 4314 5543 4574 5030 5160 * 7001 73 247 2667 * 1259 780 * * 5307 3212 0 P 74 5883 * 3921 1041 * 3289 7096 7539 2402 * * 5368 5287 4230 * 6704 * 6156 * * 74 406 2028 * 1696 533 * * 5281 3637 0 I 75 4182 6622 * * 5810 5568 5624 1515 3682 2377 5287 * * * 6513 5235 4779 2791 * 6484 75 39 5223 * 1379 700 * * 5281 1683 0 T 76 5103 * * * * 4165 * * 3573 5963 * 4371 3892 7040 4310 1065 2612 * * * 76 56 4708 * 1228 803 * * 5332 2223 0 N 77 5580 * 4800 707 * 5041 * * 2581 * * 4534 4726 5084 * 6814 6185 * * * 77 17 6428 * 2000 415 * * 5373 1000 0 D 78 * * 148 5133 * 5582 * * 6077 * * 6311 * * * * 5573 * * * 78 0 * * * * * * 5380 0 0 D 79 5715 * 1195 1947 7959 7251 6688 5315 6407 3645 5625 5623 * 6781 7115 4629 4529 7136 * * 79 59 5768 5538 0 * * * 5380 1000 0 K 80 2854 5670 * 3203 * 5798 5711 3270 3556 2781 5087 6759 * 3773 5009 3651 * 2939 * 6724 80 17 6437 * 2000 415 * 0 5236 1000 1000 K 81 5430 * 6535 4215 4271 * 3606 * 1084 * * 5641 * 7277 2225 6004 6001 6227 * 5543 81 0 * * * * * 0 5236 0 1000 L 82 4421 * 3570 6781 4796 5321 5202 4945 2231 4185 6415 5613 * 4659 1865 4990 4550 5876 6421 5491 82 0 * * * * * 0 5236 0 1000 A 83 1792 6245 7035 6872 4247 3999 6614 3842 * 2540 4822 6852 * 6910 6153 5542 4906 3136 6556 3853 83 0 * * * * * 0 5339 0 1000 S 84 7049 * * 1235 6659 5730 4538 5654 3264 3048 6000 * * 2796 * 3907 7089 6382 * 7579 84 0 * * * * * 0 5339 0 1000 N 85 4569 * 2543 2481 * 5988 * * 1784 6097 * 3255 * 3619 5589 4954 5083 5814 * * 85 0 * * * * 0 * 5339 0 1000 D 86 6100 * 2305 1519 * 6701 * 6419 4397 * 6660 5109 * 2070 4617 4891 6159 * * * 86 0 * * * * * * 5311 0 0 V 87 4978 * * * 6773 * * 1312 * 2486 3791 * * * * * 7112 1745 * * 87 0 * * * * * * 5311 0 0 L 88 * * 3037 2450 * * * * * 5307 * * * 727 6419 6214 5655 5606 * * 88 0 * * * * * * 5311 0 0 K 89 3033 * 4020 3748 * 6387 * * 833 * * 4498 * 4429 4845 5656 5433 * * * 89 0 * * * * * * 5311 0 0 L 90 4509 * * 5739 * * 7108 2358 * 1093 4063 5805 * 6711 * 5845 5621 3077 * 5459 90 0 * * * * * * 5314 0 0 V 91 3576 * * * 4752 * 3914 4016 * 5616 * 5776 * * * 5901 771 3191 * * 91 0 * * * * * * 5314 0 0 A 92 4678 * 906 3154 * * 5207 * 2471 6466 * 3808 * * 6427 6237 * * * * 92 0 * * * * * * 5315 0 0 E 93 4736 * 3018 2241 * 5111 6683 5420 1536 6143 * 5630 * 4829 4897 4333 4416 5571 * * 93 0 * * * * * * 5315 0 0 V 94 4207 * * 5777 2478 4756 4262 5013 6390 5646 4896 6593 * 5923 * 4718 5226 4243 5241 1352 94 0 * * * * * * 5354 0 0 W 95 4797 4615 * 3900 * * 7176 1107 * 6353 5512 4383 * 4575 * 5616 3637 2892 5290 * 95 0 * * * * * * 5342 0 0 K 96 2871 * 3550 4317 6711 4353 6416 5708 1171 * * 5743 * 4428 5417 4556 4292 6350 * * 96 0 * * * * * * 5342 0 0 K 97 6697 * 3439 2144 * * * * 1216 7093 * 6053 * 3116 5071 4736 * 4780 * * 97 0 * * * * * * 5342 0 0 L 98 2947 * * * * * * 1291 * 2009 5424 * * * * * * 2396 * * 98 0 * * * * * * 5342 0 0 E 99 6395 * 943 2213 * * 7272 6110 4350 * * 3486 * 4480 * 6782 4675 * * * 99 0 * * * * * * 5339 0 0 A 100 3275 * 2705 2204 * 4327 * 5449 2656 5942 * 5616 * 3870 4196 3699 4819 5455 * * 100 0 * * * * * * 5237 0 0 I 101 3553 * * * * * 5904 1787 * 1408 4268 * * 3837 * 6985 6573 3456 * * 101 0 * * * * * * 5246 0 0 L 102 4421 5518 * * 3069 6419 * 4045 * 1198 5302 6522 * * * 5288 4326 2935 * 4017 102 0 * * * * * * 4985 0 0 A 103 1375 * 5750 6189 5440 5435 * * 1820 * * * * 5555 3734 3525 4757 4943 * * 103 0 * * * * * * 4772 0 0 D 104 2203 * 2904 2699 * * 3074 * 3902 * * 6476 * 3000 5876 2677 * * * * 104 0 * * * * * * 4417 0 0 V 105 3943 * * * * * * * 188 * * * * * * * * 4134 * * 105 0 * * * * * * 4417 0 0 E 106 * * * 69 * * * * * * * * * 4415 * * * * * * 106 0 * * * * * * 4417 0 0 A 107 832 * * * * * * * 2962 * * * * * 3566 2691 3825 * * * 107 0 * * * * * * 3497 0 0 W 108 * * 1993 1048 * * * * * * * * * * * * * * 1916 * 108 0 * * * * * * 2577 0 0 F 109 * * * * 1916 * * 1048 * 1993 * * * * * * * * * * 109 0 * * * * * * 2577 0 0 T 110 * * * * * * * * * * * * * 1993 * * 417 * * * 110 0 * * * * * * 2577 0 0 H 111 * * * 602 * * 1551 * * * * * * * * * * * * * 111 0 * * * * * * 2232 0 0 H 112 * * * * * * 0 * * * * * * * * * * * * * 112 0 * * * * * * 1678 0 0 H 113 * * * * * * 0 * * * * * * * * * * * * * 113 0 * * * * * * 1678 0 0 H 114 * * * * * * 0 * * * * * * * * * * * * * 114 0 * * 0 * * * 1000 0 0 //