HHsearch 1.5 NAME c4kunB_ FAM FILE c4kunB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4kunB_.a3m DATE Sat Jun 8 09:05:58 2013 LENG 90 match states, 90 columns in multiple alignment FILT 55 out of 59 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.1 EVD 0.4710 2.1448 SEQ >ss_dssp CCCEEEEEEESSSCHHHHHHHHHHHHHTTSTTTTTTEEEEEEETTTSTTHHHHTTCCSSSEEEEEESSSCEEEESCCCCHHHHHHHTTCC >sa_dssp EEDCCACAABDCEDEDBDDACECBEDBBECEEBDEDBDDDDBCBEEEEDBDEEBEBEDCBAAABBDDEDDDDCDCCBEDDEEBCDDADBE >ss_pred CCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCHHHHHHCCEEEEEEHHHCCCCCCEEEEECCCCHHHHHHHCCCC >ss_conf 953999999957996699999999999873368982599999813586677656947712013208997426762147978999731589 >Consensus xxrxxLxLyVaGxtxxSxxaixnlxxicxexxlxgxxxLeVIDvxxxPxlAexxxIvATPtLikxxPxPxrrliGDLsdxxxvlxxLdxx >c4kunB_ XTRTKLKLFVIGNSAISKRAIINLQSICSDPKLADLCDIEVVDLCKNKGIAEQEKILATPILIKKEPLPERRIIGDLSDKQKVISALEXD >UniRef50_Q21SH6(132-216:229) Response regulator receiver domain protein n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21SH6_RHOFD E=6e-10 s/c=0.77 id=26% cov=96% --RISLTLYVVSVNPEIQKVVDQLSNVLAATYRAGFWVLNVVEVLGMPEKALEKDVFATPMLVREVPEPVLKLLGDLSRMHSVLSAI--- >UniRef50_UPI0001C38F07(71-153:158) circadian clock protein KaiB-like protein n=1 Tax=Arthrospira platensis str. Paraca RepID=UPI0001C38F07 E=5e-22 s/c=1.27 id=34% cov=91% -----LRLFVSGHSLATENTLETLHQLL-ERSLNHPYTLKVIDVLKHPEQAEASHISATPTLMKVWPQPKRRIVGELNDVDTILELL--- >UniRef50_D0LT55(144-222:237) Response regulator receiver protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LT55_HALO1 E=5e-12 s/c=0.91 id=28% cov=88% --RVELCLYLHSGTSASAAAETNLQNALADFD-TTRLQLESIDLARSPRAAhPEDKVVFTPTLVRRGPGSRLALVGDLGDRA--------- >UniRef50_Q7U871(9-82:383) Adaptive-response sensory-kinase sasA n=26 Tax=Cyanobacteria RepID=SASA_SYNPX E=2e-11 s/c=0.95 id=22% cov=82% --RQRLKlLLVAARHHLSGPDLRSVVHYLERDDVGFQVTLQLADPSQQPELLELHRLVITPALIKLSPAPKQVFAG--------------- >UniRef50_C5S904(31-115:127) KaiB domain protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S904_CHRVI E=7e-27 s/c=1.42 id=36% cov=96% --RYVLKLYVAGLTPRSTTALRSVKDIC-ERHLQGRYELEIIDIYEHPSLARDQQIVAAPTLIKQLPLPLRRLIGDMADQERVLVGLD-- >UniRef50_B0JK50(21-91:384) Adaptive-response sensory-kinase sasA n=4 Tax=Chroococcales RepID=SASA_MICAN E=1e-14 s/c=1.14 id=26% cov=80% ---IQLLLFVD-DRPSSQEIIRQIQSYLQSLKSDYPIDLQIIEIRQQPHLVEHFRLVATPALVKIAPGPRHTLAG--------------- >UniRef50_D2L710(3-83:90) Circadian clock protein KaiB n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L710_9DELT E=8e-18 s/c=1.13 id=35% cov=91% ---TRLTLYLSGTDPGSRRMTAALRAWC-ERELGGDYRLNVLDISDWPKRAENLPILATPALVLESPG--RITVGDLSDIPKTMAAL--- >UniRef50_B5IIP9(24-84:413) PAS fold family n=1 Tax=Cyanobium sp. PCC 7001 RepID=B5IIP9_9CHRO E=9e-09 s/c=1.01 id=29% cov=69% ------TLFICGGAPASAAALCRLRHLC-DQEGSTRVELRVVDVSSDPEPALRAGVRAIPSLVAD-PLP--------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * X 1 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 1 * * * * * * * 0 0 0 T 2 * * * * * * * * * * * * * * * * 0 * * * 2 0 * * * * * * 1805 0 0 R 3 * * * * * * * * 3179 * * * * * 282 3900 * * * * 3 0 * * * * * * 3543 0 0 T 4 3800 * * * 3829 * 3428 1554 * * * * * 3837 * * 3325 3101 4386 3473 4 0 * * * * * * 3891 0 0 K 5 4721 * * 3279 * * * 4994 3281 3881 * * * 2248 1942 4105 * 2965 * * 5 0 * * * * * * 4147 0 0 L 6 * * * * 3181 * * * * 169 * * * * * * * * * * 6 0 * * * * * * 4266 0 0 K 7 * 4725 * * * 5990 6029 * 2561 2772 5807 * * 5890 1357 * 2653 6002 * 5999 7 64 4533 * 0 * * * 4299 1000 0 L 8 * * * * * * * * * 0 * * * * * * * * * * 8 0 * * * * * * 4378 0 0 F 9 * * 5554 * 1577 * * * * 4569 * * * * * * * * * 734 9 33 * 5455 * * * * 4378 0 0 V 10 * * * * 4823 * * 2169 * 3522 * * * * * * * 610 * * 10 0 * * * * * 0 4359 0 1000 I 11 1307 4523 2836 * * * 4796 5637 * 5681 * * * 5281 5655 3205 3188 3779 * * 11 78 * 4256 * * * 0 4359 0 1000 G 12 4456 * 4218 * * 473 * * 4839 * * * * 5921 * 2956 * * * * 12 0 * * * * 595 1564 4279 0 1743 N 13 4496 * 2860 4125 * 4097 3661 5939 4823 6485 5002 2822 * 3791 2921 5142 3088 4736 * * 13 53 * 4786 * * * 0 4359 0 1000 S 14 3929 * 5033 * * 5007 4474 * * * * 3388 * * 3346 2088 1327 * * * 14 0 * * * * 0 * 4349 0 1513 A 15 4181 * 6135 * 6015 5951 4064 * 5311 2766 * * 1183 5121 * 3619 5171 3494 * * 15 26 * 5794 * * * * 4398 0 0 I 16 2817 * * 4274 * 4173 5027 5682 2178 3979 * 2726 * 5915 2538 4795 6051 5298 * * 16 0 * * * * 0 * 4384 0 1000 S 17 3901 * * * * * * 4813 5171 * * * * * * 313 3945 * * * 17 0 * * * * * * 4398 0 0 K 18 3266 * * 2522 * 4106 * 4065 4799 3611 4812 5701 * 2749 2624 6367 4099 4321 * * 18 0 * * * * * * 4398 0 0 R 19 3177 * 5141 4241 * * 3925 5768 4140 5337 5902 4057 4607 3234 1746 * 4290 4209 6038 * 19 0 * * * * * * 4398 0 0 A 20 751 * 4008 * * * * 3341 * * 5115 * * 3891 * 4527 4399 4110 * * 20 0 * * * * * * 4398 0 0 I 21 * * * 4914 5228 * * 1436 * 1719 4706 * * * * * 5115 2325 * * 21 0 * * * * * * 4398 0 0 I 22 2830 5512 4813 2391 5902 * * 4941 3351 * * 3781 * 2829 2535 5230 4285 * * * 22 41 * 5171 * * * * 4398 0 0 N 23 3717 * * 3881 * * * * 5898 * 6057 1152 * 3405 3633 3256 3623 6211 * * 23 0 * * * * 0 * 4360 0 1000 L 24 5311 * * * * * * 1949 * 920 * * * * 5272 * * 2631 * * 24 0 * * * * * * 4398 0 0 Q 25 * 5863 5628 3754 * 5141 3955 * 2267 5272 5794 * * 3328 1814 3981 5337 4148 * 6002 25 0 * * * * * * 4398 0 0 S 26 3377 * 3687 4013 * * 3104 * 2856 * * 3103 * 3411 2198 3619 * * * * 26 0 * * * * * * 4398 0 0 I 27 4914 5141 * * 4979 * 5486 1237 * 2412 * * * 4900 * * * 3507 5115 3034 27 0 * * * * * * 4398 0 0 C 28 * 1009 * * 6204 * * 4630 * 1436 5272 * * * 5628 * * 4900 * * 28 590 * 1576 * * * * 4398 0 0 S 29 2654 * 3092 1643 * * 3794 * 3930 * * * * 3259 5037 3501 4545 * * * 29 0 * * * * 0 * 4232 0 3200 D 30 3187 * 2203 1008 * * * * * * * 4420 * 5486 4607 4713 5171 * * * 30 621 5486 1611 1000 1000 * * 4398 1000 0 P 31 3526 * 4292 * 4469 * * * 5650 2154 * 5357 4869 2808 2433 4882 3029 5088 * * 31 0 * * * * 315 2351 4274 0 3063 K 32 5629 4778 2832 2500 * 5452 3205 * 3523 5085 * 6005 * 5851 4990 4371 * 5202 * 2068 32 50 * 4875 * * 541 1678 4342 0 1822 L 33 3465 * 5104 * 3579 4374 * 6162 * 822 * * 5131 * 4716 5643 * 4043 * 5537 33 0 * * * * 904 1102 4318 0 1531 A 34 2692 * 3167 5891 * 2363 * * 3964 * * 3309 2371 5181 5243 4667 4172 5994 * * 34 0 * * * * * 0 4384 0 1000 D 35 * 5151 3082 6080 4597 1022 3733 * * * * 4664 5575 * * 5731 4166 4604 * 4215 35 0 * * * * 0 * 4384 0 1000 L 36 5490 * 3649 4359 4832 5322 3845 * 4106 4386 5745 4209 3272 3056 2083 4478 * 4784 * * 36 32 5490 * 0 * * * 4409 1000 0 C 37 * 2545 * * 3737 * 4080 3951 * 4918 * * * * * * * 3150 4832 1155 37 32 5494 * 1000 1000 * * 4409 1000 0 D 38 5038 * 2369 1972 * 4934 * * * * * 6014 * 2727 4424 4400 2491 4319 * * 38 0 * * * * * * 4409 0 0 I 39 * * * * * * * 2516 * 359 * * * * * * * 4465 * * 39 0 * * * * * * 4409 0 0 E 40 * * * 835 * * 5183 * 3240 * * 3973 * 2470 4761 5317 * * * * 40 0 * * * * * * 4409 0 0 V 41 * * * * * * * 1341 * 4632 * * * * * 4918 * 911 * * 41 0 * * * * * * 4409 0 0 V 42 4632 * * * * * * 917 * 4145 * * * * * * 6141 1553 * 5745 42 0 * * * * * * 4409 0 0 D 43 * * 269 3610 * * * * * * * 4707 5494 5160 * * * * * * 43 0 * * * * * * 4409 0 0 L 44 * * * * * * * 1580 * 2539 * * 4632 * * * * 1142 * * 44 0 * * * * * * 4409 0 0 C 45 4225 5717 5317 5494 5967 5928 6023 4201 6075 1981 6225 4934 * * 4790 2491 3947 * * 2435 45 0 * * * * * * 4409 0 0 K 46 5322 * 3856 1985 * 4832 * * 2500 4988 * 4934 * 1858 3946 4776 * * * * 46 0 * * * * * * 4409 0 0 N 47 * * 3363 5886 * * 2373 * 4682 * 4832 2810 * 1590 4747 3675 * * 5130 * 47 0 * * * * * * 4409 0 0 K 48 6116 * * * 5404 * * * 4294 * * * 208 * 5839 6175 * 6141 * * 48 0 * * * * * * 4409 0 0 G 49 4855 * 3905 1673 * 4928 4404 6492 5130 * 6023 * * 2325 4384 4721 5839 6215 5804 3111 49 0 * * * * * * 4409 0 0 I 50 4408 * * 3631 6215 * * 4835 3905 969 5793 * 5524 4015 3422 * 5317 6061 * 6492 50 0 * * * * * * 4409 0 0 A 51 382 * * * * * * * * 3471 * 5839 * * * 6041 * 3191 * * 51 49 4918 * 0 * * * 4409 1000 0 E 52 5304 * * 662 * 6175 * 6240 4560 4137 * * 4306 5964 3531 * 6116 4357 * * 52 0 * * * * * * 4409 0 0 Q 53 4081 * 3740 2172 * 6225 3283 4875 4424 4182 * 3657 * 4363 2757 6046 4225 * * 4383 53 0 * * * * * * 4409 0 0 E 54 4033 * 2018 2212 3142 6492 3557 * 4832 5130 * 5023 * 4267 5804 6107 * * * 3504 54 0 * * * * * * 4409 0 0 K 55 5317 * 4832 * * 3057 4941 * 2239 5839 * 3761 5130 2224 2228 5155 * * * * 55 0 * * * * * * 4409 0 0 I 56 * * * * * * * 977 * 2064 * * * * * * * 1983 * * 56 0 * * * * * * 4409 0 0 L 57 * * * * 3665 * * 3709 * 1901 6014 * * 5749 5524 3982 * 1127 * * 57 0 * * * * * * 4409 0 0 A 58 227 * * * 4208 * * 4632 * * * * * * * * * 4292 * * 58 0 * * * * * * 4409 0 0 T 59 3237 * * * * * * 3011 * 4422 * * * * * * 525 5138 * * 59 0 * * * * * * 4409 0 0 P 60 * * * * * * * * * * * * 0 * * * * * * * 60 0 * * * * * * 4492 0 0 I 61 2147 * * * * * * 5250 * 4876 4821 * * * * 4355 714 5646 * * 61 0 * * * * * * 4492 0 0 L 62 * * * * * * * 6917 * 41 * * * * * * * 5646 * * 62 0 * * * * * * 4492 0 0 I 63 4767 * * 5791 * * * 1319 * 3526 5034 * * * * 4822 5790 1420 * * 63 0 * * * * * * 4492 0 0 K 64 5507 * 5314 * * * * 5791 816 4253 * * * * 1669 * * * * * 64 0 * * * * * * 4492 0 0 K 65 5488 * 4567 2157 * 5310 * 2811 3160 2630 * * * 4880 3702 * 6126 2785 * * 65 32 * 5507 * * * * 4492 0 0 E 66 4933 * 6040 4081 5951 3830 4891 * * 1733 * 5777 * 4317 5177 1957 * 4794 4427 4805 66 73 5380 5300 0 * 0 * 4386 1000 1000 P 67 * * * 4897 * * * * * * * * 149 * * 6109 5257 * * 5371 67 0 * * * * * 0 4454 0 1000 L 68 3560 * 4897 2524 * 2614 6043 * 5940 2506 * * 2442 4926 5101 5371 4709 5131 * * 68 43 * 5081 * * * 0 4454 0 1000 P 69 * * * * * * * * * * * * 180 * * 3089 * * * * 69 0 * * * * * 0 4416 0 1534 E 70 4224 * * 3567 * * * 4439 3092 2803 6053 * 4357 4493 2471 * 4948 2448 * 4290 70 0 * * * * 0 * 4311 0 1534 R 71 * * * * * * 4414 * 4061 3826 5740 * * 1855 974 * 5748 * * * 71 0 * * * * * * 4386 0 0 R 72 4236 * * * * * * 3024 2586 * * * * * 1028 * 4195 3151 * * 72 0 * * * * * * 4386 0 0 I 73 * * * * 3215 * * 1576 * 1097 * * * * * * 5113 4048 * * 73 0 * * * * * * 4386 0 0 I 74 2095 * * * * * * 1098 * 4242 * * * * * 4878 5886 2358 * * 74 0 * * * * * * 4386 0 0 G 75 * * * * * 0 * * * * * * * * * * * * * * 75 78 4252 * 0 * * * 4386 1542 0 D 76 * * 272 4039 * * * * * * * 3966 * 5161 * 5732 * * * * 76 0 * * * * * * 3972 0 0 L 77 * * * * 3778 * * 4946 * 371 3040 * * * * * * * * * 77 32 5513 * 1000 1000 * * 3972 1000 0 S 78 3513 * 4363 * * 4634 * 5248 * 5708 * 4700 * * * 577 3850 * * * 78 0 * * * * * * 3972 0 0 D 79 * * 580 5270 * 6590 4260 * * * * 3161 * 4886 3820 5263 * * * * 79 0 * * * * * * 3865 0 0 K 80 5294 * * 4065 * * 4565 3672 2662 5355 4292 * * 6111 2341 4263 2343 3748 5320 * 80 0 * * * * * * 3812 0 0 Q 81 3191 * 2982 1392 * 5555 4292 * 3961 * * * 3878 3500 4073 * * * * 5028 81 0 * * * * * * 3812 0 0 K 82 * * * * * * * * 1377 * * 5283 * 2764 1679 3598 5438 5369 * * 82 0 * * * * * * 3661 0 0 V 83 * * * * * * * 2973 * 3635 * * * * * * 4441 422 * * 83 0 * * * * * * 3661 0 0 I 84 5132 4878 * * * * * 3921 5272 366 3846 * * * * * * * * * 84 0 * * * * * * 3624 0 0 S 85 3673 * 5515 3673 * * * 2563 * 4060 5209 5322 * 3415 2867 3138 5267 2819 * 5161 85 0 * * * * * * 3591 0 0 A 86 1983 5204 5332 * * 1035 * 3393 * 4059 5064 5514 * * * * * * * * 86 0 * * * * * * 3548 0 0 L 87 * * * * * * * 3959 * 139 5173 * * * * * * * * * 87 0 * * * * * * 3548 0 0 E 88 * * 418 2577 * * * * 4529 * * * * 4614 * * * * * * 88 0 * * * * * * 2843 0 0 X 89 * * * * * * * * * * 0 * * * * * * * * * 89 0 * * * * * * 1000 0 0 D 90 * * 0 * * * * * * * * * * * * * * * * * 90 0 * * 0 * * * 1472 0 0 //