HHsearch 1.5 NAME c4kt5C_ FAM FILE c4kt5C_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4kt5C_.a3m DATE Sat Oct 12 08:26:44 2013 LENG 88 match states, 88 columns in multiple alignment FILT 10 out of 14 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.2 EVD 0.4170 0.0992 SEQ >ss_dssp CCCCCGGGGGGTTSCHHHHHHHHHHTTCSCBCHHHHHHHHTCCHHHHHHHHHHHTTCTTTEEEEEEEEEETTTTEEEEEEEEEEECCC >sa_dssp ECECBEDBEEDEECDBBBAAABBBDECEDDABDDCABECAEBEDEDADEBBDDACECEECADCEDDECDCEDEEEEDDBACBEDCDDE >ss_pred CCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHEEEEEEEEEEECCCCCEEEEEEEEEEECC >ss_conf 9335638984067873678899998539951599999862964343788999998411200356437874476630799999997519 >Consensus dxxiPxxvxxlxxxPLYlxVAxWglxqxxwvtrxdIaxaFxItxrrAxxiltYIxsxxxxIxxxcxxxtxxnxxxxrxxxxIxxvxxe >c4kt5C_ DYVIPDSVKNYDGEPLYILVSLWCKLQEKWISRNDIAEAFGINLRRASFIITYISRRKEKISFRVRYVSYGNLHYKRLEIFIYDVNLE >UniRef50_C5B8S0(7-68:145) Transcriptional activatory protein CaiF n=2 Tax=Edwardsiella RepID=C5B8S0_EDWI9 E=0.0005 s/c=0.74 id=30% cov=72% --------REYAQEPLYLSVARWVMQQQRWVSAREIAQQFDLSPCKAINTVSYILSGVEEIT--CQTKTVPN---------------- >UniRef50_Q7N9P5(35-121:166) Similar to unknown protein n=2 Tax=Photorhabdus RepID=Q7N9P5_PHOLL E=4e-24 s/c=1.29 id=22% cov=100% DFRLPACLSHLKDTPLYMAVAYWGLLKGSGFTKSEISQVFRVTERRATDVMNYIYNERRDVIA-CEKVFFREKQGSRRQMLIVTAVVE >UniRef50_B5QXF3(31-112:170) Putative uncharacterized protein n=31 Tax=Salmonella enterica RepID=B5QXF3_SALEP E=6e-23 s/c=1.32 id=43% cov=94% --FIPESVRQYADEPLYIIVAHWCLLQQNWVQRNQIAEAFHITARRASYLIAYLRSKTSRVVSICRHQTLPN-KARRYEIYVIRV--- >UniRef50_D0ZEM3(39-121:372) Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZEM3_EDWTE E=2e-19 s/c=1.17 id=25% cov=92% ----PACIKHLGVLPLDLSVAWWGLYKNAPITRVDVALAFRISPRQAGKLLDSL-SLIDSIVCQLGWQTVDCG-YKQFTVRILQVD-- >UniRef50_Q9F504(28-111:168) YheC protein n=2 Tax=Escherichia coli RepID=Q9F504_ECOLX E=1e-17 s/c=1.08 id=31% cov=94% --VIPECVADLKGYPLYIIVAYWGLRNNKTLTTTDVSRNFLITQQQSYDVLTYIYqEAQKQITATKR--TLFNEHKRRISAFrILDID-- >UniRef50_A9QNP9(27-85:169) Sch_V12 n=8 Tax=Salmonella enterica RepID=A9QNP9_SALET E=8e-17 s/c=1.49 id=32% cov=67% -FYMPPGIRHLGTLSLYRAVAWWGLFLGREFTRDDVSEAFSIEPRRASGILNYICNRHN----------------------------- >UniRef50_C0ATT7(4-69:135) Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=C0ATT7_9ENTR E=2e-08 s/c=0.91 id=32% cov=70% ---------EYMNKPLYLSIADWVQEQERWVSAKEIAKKFDIPQCNAINIVSYILSDVKEI--ECETKSVPN---------------- >UniRef50_A7ZHC5(5-69:131) Transcriptional activatory protein CaiF n=15 Tax=Enterobacteriaceae RepID=A7ZHC5_ECO24 E=6e-06 s/c=0.80 id=28% cov=69% ----------YVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVAEIS--CEVKMIPN---------------- >UniRef50_C4RYB5(18-92:145) Putative uncharacterized protein n=1 Tax=Yersinia bercovieri ATCC 43970 RepID=C4RYB5_YERBE E=3e-21 s/c=1.36 id=33% cov=85% DYYLPACLAHLGSPPLYMAVAYWGLLKKSPFTRDDLSAAFHITVRRAADVMTYIYiERQNCITSKKSLVNIGSGH-------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * D 1 * * 0 * * * * * * * * * * * * * * * * * 1 0 * * * * * * 1952 0 0 Y 2 * * * * 1034 * * * * * * * * * * * * * * 967 2 0 * * * * * * 2107 0 0 V 3 * * * * 2499 * * * * * * * * * 2631 * * 1490 * 1711 3 0 * * * * * * 2549 0 0 I 4 * * * * * * * 908 * 1762 2538 * * * * * * * * * 4 0 * * * * * * 2549 0 0 P 5 * * * * * * * * * * * * 0 * * * * * * * 5 0 * * * * * * 2707 0 0 D 6 1320 * 2654 1728 * * * * * * * * 2851 * * * * * * * 6 0 * * * * * * 2707 0 0 S 7 * 853 * * * 2851 * * * * * * * * * 1700 * * * * 7 0 * * * * * * 2707 0 0 V 8 * * * * * * * 1791 * 1999 * * * * * * * 1118 * * 8 0 * * * * * * 2707 0 0 K 9 2090 * * * * * * * 1951 * * * * * 1359 3103 * * * * 9 0 * * * * * * 3039 0 0 N 10 * * 3018 2104 * * 1256 * * * * 3124 * 3179 * * * * * * 10 0 * * * * * * 3179 0 0 Y 11 * * * * * * * * * 972 * * * * * * * * * 1028 11 0 * * * * * * 3437 0 0 D 12 2402 * 3167 * * 1768 * * 2211 * 3433 * * * * * * 3363 * * 12 0 * * * * * * 3437 0 0 G 13 * * 2240 3363 * 2185 * * * * * 3433 * 3557 * 3381 3697 3052 * * 13 0 * * * * * * 3437 0 0 E 14 * * * 1734 * * * * 2398 2339 * * 3381 * * * 3219 * * 3202 14 0 * * * * * * 3437 0 0 P 15 * * * * * * * * * * * * 116 * * 3697 * * * * 15 0 * * * * * * 3437 0 0 L 16 * * * * * * * * * 0 * * * * * * * * * * 16 0 * * * * * * 3437 0 0 Y 17 * * 3052 * * * * * * * * * * * * * * * * 185 17 0 * * * * * * 3437 0 0 I 18 * * * * * * * 1625 * 1339 2298 * * * 3697 * * * * * 18 0 * * * * * * 3437 0 0 L 19 1834 * * * * * * 2232 * 2262 * * * * * 1746 * * * * 19 0 * * * * * * 3437 0 0 V 20 * * * * * * * 2398 * * * * * * * * * 304 * * 20 0 * * * * * * 3437 0 0 S 21 170 * * * * * * * * * * * * * * 3167 * * * * 21 0 * * * * * * 3437 0 0 L 22 * * 3433 3363 * * 3262 * * 3167 * * * * 3557 * * * 2339 1680 22 0 * * * * * * 3437 0 0 W 23 * * * * * * * * * * * * * * * * * * 0 * 23 0 * * * * * * 3437 0 0 C 24 * 2214 * * * 972 * * * * 3363 * * * * * * 2494 * * 24 0 * * * * * * 3437 0 0 K 25 * * * * * * * * 3167 704 2457 * * 3433 * * * * * * 25 0 * * * * * * 3437 0 0 L 26 3363 * * 3433 3697 * * * * 1255 * * * 3557 3202 * * * * 3052 26 0 * * * * * * 3437 0 0 Q 27 * * * 3363 * * * * 1626 3697 * 3202 * 1347 * * * * * * 27 0 * * * * * * 3437 0 0 E 28 * * * 2294 * 2438 * * 3381 * * 1615 * 2402 * * * * * * 28 0 * * * * * * 3437 0 0 K 29 3052 * * * * * * * 2185 * * 3262 * * 1507 2298 * * * * 29 0 * * * * * * 3437 0 0 W 30 * * * 3697 * 3219 * * * * * * 2207 * * * 3202 * 1028 * 30 0 * * * * * * 3437 0 0 I 31 * * * * 1834 * * 2108 * 3202 * * * * * * * 1400 * * 31 0 * * * * * * 3437 0 0 S 32 * * * * * * * 3363 * * * * * 3262 * 1792 972 * * * 32 0 * * * * * * 3437 0 0 R 33 1864 * * * * * * * 3219 * * * * * 973 * 3202 * * * 33 0 * * * * * * 3437 0 0 N 34 * * 2530 * * * * * 3433 * * 2214 * * 2457 3219 3202 3052 * * 34 0 * * * * * * 3437 0 0 D 35 * * 961 1388 * * * * * * * * * 3262 * * * * * * 35 0 * * * * * * 3437 0 0 I 36 * * * * * * * 743 * 3381 * * * * * * * 1707 * * 36 0 * * * * * * 3437 0 0 A 37 961 * * * * * * * * * * * * * * 1040 * * * * 37 0 * * * * * * 3437 0 0 E 38 3381 * * 1773 * * * 3363 3433 3052 * * * 2379 3202 * * * * * 38 0 * * * * * * 3437 0 0 A 39 973 * * * * * 3363 * 3433 * * 3202 * 3557 * * * 3219 * * 39 0 * * * * * * 3437 0 0 F 40 * * * * 0 * * * * * * * * * * * * * * * 40 0 * * * * * * 3437 0 0 G 41 * * 1864 * * 3167 2320 * * 3202 * * * * 2133 3697 * * * * 41 0 * * * * * * 3437 0 0 I 42 * * * * * * * 308 * 3557 * * * * * * * 3219 * * 42 0 * * * * * * 3437 0 0 N 43 * * * 2520 * * * * * * * 3167 3433 * * 2283 1264 * * * 43 0 * * * * * * 3437 0 0 L 44 3262 * * 3219 * * 3363 * * 3167 * * 1823 2313 * * * 3381 * * 44 0 * * * * * * 3437 0 0 R 45 * 2494 * * * * * * * * * * * 3202 697 3363 * * * * 45 0 * * * * * * 3437 0 0 R 46 * * * * * * * * 2457 * * 3433 * 2125 1011 * * * * * 46 0 * * * * * * 3437 0 0 A 47 166 * * * * * * * * * * * * * * 3202 * * * * 47 0 * * * * * * 3437 0 0 S 48 3381 * * * * 3052 * 2494 * * * * * * * 1773 3219 3363 * 3202 48 0 * * * * * * 3437 0 0 F 49 * * 1680 * 3167 3697 * * 3052 * * 1864 * * * * * * * 3262 49 0 * * * * * * 3437 0 0 I 50 * * * * * * * 1831 * 2153 * * * * * * 2457 1680 * * 50 0 * * * * * * 3437 0 0 I 51 * * * * * * * 2214 * 1309 2298 * * * * * * 2494 * * 51 0 * * * * * * 3437 0 0 T 52 3262 * 3052 * * * * * * * * 2438 * * * 2494 1275 * * * 52 0 * * * * * * 3437 0 0 Y 53 * * * * * * * * * * * * * * * 3052 * * * 185 53 0 * * * * * * 3437 0 0 I 54 * * * * * * * 367 * 2153 * * * * * * * * * * 54 185 * 3052 * * * * 3437 0 0 S 55 * 3142 * * * * * * * 1625 * * * * 3086 3137 * * * 1595 55 365 2162 * 0 * 0 * 3147 1453 1000 R 56 * * * 2289 * * * * * * * 2438 * * 3167 1001 * * * * 56 0 * * * * * * 3437 0 0 R 57 3202 * 3433 2290 * 3557 * * 3262 3052 * * * * 1814 * * * * * 57 0 * * * * * * 3437 0 0 K 58 * * * * * * 3697 3052 3167 * * * * 2289 3219 * 3262 1864 * * 58 0 * * * * * * 3437 0 0 E 59 3363 * 3052 2349 * * * * 2313 * * 2530 * * 3219 3262 * * * * 59 0 * * * * * * 3437 0 0 K 60 * 3206 3037 1768 * * * * 3082 * * * * 3108 3191 2913 * * * * 60 0 * * * * * * 3361 0 0 I 61 * * * * * * * 379 * * * * * * * * * 2112 * * 61 148 * 3356 * * * * 3361 0 0 S 62 * * * * * * * 2969 * * * * * * * 1947 1495 1953 * * 62 402 * 2040 * * * 0 3267 0 1000 F 63 1593 2477 * * 2461 * * * * * * * * * * 1702 * * * * 63 270 * 2551 * * 1603 576 2779 0 1532 R 64 * * * 2430 * * * 2683 2635 * * * * 2516 2635 * 2626 * * * 64 0 * * * * 0 * 2941 0 1976 V 65 * 930 * * * * * * 2156 2913 * * * * * * * 3082 * * 65 0 * * * * * * 3361 0 0 R 66 * * * 1618 * 2913 * * * * * * * 3480 1541 3206 * * * * 66 178 * 3108 * * * * 3361 0 0 Y 67 * * * * * * 3029 * 2830 2952 * * * * * * 2270 3081 2730 2929 67 0 * * * * * 0 3207 0 1000 V 68 * * * * * * * * 1619 * * * * 1872 * * * 1318 * * 68 0 * * * * 0 * 3207 0 1000 S 69 * * * * 3037 * * * * * 3235 3206 * * * 2212 1159 * * * 69 0 * * * * * * 3361 0 0 Y 70 * * * * 3037 * * 2220 * 2149 * * * * * * * 1644 * 3082 70 0 * * * * * * 3361 0 0 G 71 * * 2913 * 3108 2142 * * * * * * 1311 * 3037 * * * * * 71 0 * * * * * * 3361 0 0 N 72 * 2913 * 3037 * * * * * * * 651 * * * 3206 * * * * 72 243 * 2690 * * * * 3361 0 0 L 73 * * * 2417 * 1406 * * 2311 2096 * * * * * * * * * * 73 346 * 2228 * * 0 * 2586 0 1000 H 74 * * * * * * 763 * 2275 * * * * 2293 * * * * * * 74 0 * * * * 0 * 2500 0 1000 Y 75 2405 * * * * 2220 * * 2383 * * * * * * * * * * 1305 75 0 * * * * * * 2750 0 0 K 76 * * * * * * * * 1305 * * * * * 1394 2220 * * * * 76 0 * * * * * * 2750 0 0 R 77 * * * * * * * * * * * * * 2262 337 * * * * * 77 0 * * * * * * 2750 0 0 L 78 * * * * 2262 * * 2383 * 2350 * * * * 2220 * * * * 2405 78 0 * * * * * * 2750 0 0 E 79 * * * 1377 * * * * * * * * * 2220 * 2383 2262 * * * 79 0 * * * * * * 2750 0 0 I 80 2383 * * * * * * 1377 * * 2220 * * * * * * 2262 * * 80 0 * * * * * * 2750 0 0 F 81 * * * * 1366 * * * * 2220 * * * * 2262 * * * * 2405 81 307 2383 * 0 * * * 2750 1000 0 I 82 * * * * * * * 302 * * * * * * * * * 2405 * * 82 0 * * * * * * 2750 0 0 Y 83 * * * * * * * 2405 * 1321 * * * * * * * 2220 * 2350 83 0 * * * * * * 2750 0 0 D 84 * * 1366 * * * * * * * * * * 2262 2405 * 2220 * * * 84 0 * * * * * * 2750 0 0 V 85 2220 * * * * * * 2383 * * * * * * * * * 753 * * 85 0 * * * * * * 2750 0 0 N 86 * * 1060 * * * * * * * * 1931 * * * * * 1954 * * 86 0 * * * * * * 2518 0 0 L 87 * * * * * * * * * 984 * * * * * * * 1016 * * 87 0 * * * * * * 1708 0 0 E 88 * * * 0 * * * * * * * * * * * * * * * * 88 0 * * 0 * * * 1708 0 0 //