HHsearch 1.5 NAME c4kp3C_ FAM FILE c4kp3C_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4kp3C_.a3m DATE Sat Jul 13 08:18:03 2013 LENG 81 match states, 81 columns in multiple alignment FILT 50 out of 54 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.6 EVD 0.4356 0.0894 SEQ >ss_dssp CCHHHHTSCGGGCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHC >sa_dssp EBEEBEEDDEEECDCEBADDBDEBCCDEBEEEDEDEECDEDCEECDEEBDDDCDECEDDDEEDDEEDEDDDEEEEEDEEEE >ss_pred CCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC >ss_conf 972211158577669999999999999999972947899899999999999999983011209999999999999996219 >Consensus exxxxxekxxxxltvxdVydiAxxIgxEfExlxgxxxVxxLmpkVVxvLExLExxxxxxxxxxEeLrxxxexLxxexExlr >c4kp3C_ EDEGALAKSPLQLTTDDVYDISYVVGRELMALGSDPRVTRLQFKIVRVMEMLETLVNEGSLAVEELRMERDNLKQEVEGLR >UniRef50_UPI000186DD36(1-77:331) Vimentin, putative n=4 Tax=Neoptera RepID=UPI000186DD36 E=3e-10 s/c=0.86 id=25% cov=89% -----MEQPEVELSVVDVYDIASEIGKEFEKIidgHGPDIVMSLMPKVIYALEHLENFSlqnEKENTIVQDLKSKITKLELE----- >UniRef50_Q93317(9-82:419) Protein C32A3.3a, partially confirmed by transcript evidence n=4 Tax=Rhabditida RepID=Q93317_CAEEL E=3e-12 s/c=0.98 id=29% cov=81% -----------QITVVDVYDLAASIGNDFEKLidnYGNECVRGIMPKVISALETLEAMAAGNDRENEEIM----RLSKAVERL- >UniRef50_UPI000176038E(18-104:301) PREDICTED: similar to RILP-like protein 1 (Rab-interacting lysosomal-like protein 1) n=1 Tax=Danio rerio RepID=UPI000176038E E=3e-11 s/c=0.80 id=30% cov=101% EAHSCFDRTFSSMTVDDVYEIAKVVGAEVEKLidsYGKSSVEGLVSRIVKVLELLESFAARNQshkCKEEELLKAFETLQLQQQKKR >UniRef50_UPI00004D7AF8(15-91:1264) UPI00004D7AF8 related cluster n=4 Tax=Xenopus (Silurana) tropicalis RepID=UPI00004D7AF8 E=3e-10 s/c=0.86 id=30% cov=67% ---------------MEVYDemvtaMAGSIYSELEKLigdYGQGAVTGLMPLLVTVLESLEATCAQAREREEQLEL------------- >UniRef50_A7S9D5(2-78:379) Predicted protein n=2 Tax=Nematostella vectensis RepID=A7S9D5_NEMVE E=6e-09 s/c=0.80 id=39% cov=85% ---------ALDLSTADVYEQASVIGQDIEKIidqYGHEAVLDLMPKVVRVLEELEILVSEREnekLEFAELKMENERLYLEI---- >UniRef50_Q9GQF1(25-111:1227) JNK-interacting protein 3 n=8 Tax=Drosophila RepID=JIP3_DROME E=7e-09 s/c=0.71 id=22% cov=98% EDNNMVMSEKNEQVVSIVQQLAGSIYQEFERMinrYDEDVVKNLMPLLVNVLECLDASYrinQEQDVEVELLREDNEQLVTQYE--- >UniRef50_A7RNC5(16-96:1111) Predicted protein n=1 Tax=Nematostella vectensis RepID=A7RNC5_NEMVE E=2e-08 s/c=0.74 id=27% cov=37% -------------------------------------VSGLMPLMVSVLEQLDSAYGDNNEQLVEL--------------- >UniRef50_Q5ND29(27-98:369) Rab-interacting lysosomal protein n=5 Tax=Mammalia RepID=RILP_MOUSE E=3e-06 s/c=0.74 id=25% cov=80% -----------------VYHLAGALGTELQglaRRFGPDAAAGLVPLVVRALELLEKAAvgpapDSLQVSAQQAEVELRRLREENQRLR # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * E 1 * * * 0 * * * * * * * * * * * * * * * * 1 0 * * * * * * 2404 0 0 D 2 2347 * 659 * * * * * * * * * * * * 2557 * * * * 2 0 * * * * * * 2591 0 0 E 3 * * 3076 1422 * * 2891 * * * * 2130 * * * 2787 * * * * 3 0 * * * * * * 2605 0 0 G 4 * * * * * 935 * * * * * 2130 * * * 2891 * 3136 * * 4 226 2787 * 0 * * * 2605 1000 0 A 5 731 2109 * * * * * * * * 2592 * * * * * * * * * 5 0 * * * * * * 2929 0 0 L 6 * * * * 1792 * * * * 1532 2549 * * * * * * 2871 4109 * 6 0 * * * * * * 3174 0 0 A 7 4185 * 2230 876 * 4312 * * * * 2871 * * * * * * * * * 7 0 * * * * * * 3174 0 0 K 8 4187 * * * * * * * 1094 * * * * 3578 2420 2278 * * * * 8 0 * * * * * * 3248 0 0 S 9 4041 * 3344 2942 * 3868 * * * * * 3495 2040 * * 2273 3274 * * * 9 0 * * * * * * 3248 0 0 P 10 1859 3557 * 3815 4182 * * * 3057 * * * 2019 * * 3854 * 3695 * * 10 0 * * * * * * 3235 0 0 L 11 3695 * * 2986 2465 3989 * * * 2762 * 3057 * * * 2836 3760 3815 * * 11 0 * * * * * * 3235 0 0 Q 12 2932 * 3603 1359 * * * * 4062 4389 * * * 2440 * 3253 * * * * 12 0 * * * * * * 3361 0 0 L 13 * * * * 3475 * * 3083 * 723 3213 * * 3677 * * * * * * 13 0 * * * * * * 3426 0 0 T 14 * * * * * * * * * * 3852 4848 * * * 2070 787 3677 * * 14 0 * * * * * * 3426 0 0 T 15 3826 * * * * * * * * * * * * * * 3862 2548 536 * * 15 0 * * * * * * 3422 0 0 D 16 4094 * 2425 1827 * * * * * 5288 3238 * * 4861 * 5466 * 1812 * * 16 0 * * * * * * 3660 0 0 D 17 * * 522 4899 * * * 5466 2779 * * * * * 3295 * * * * * 17 0 * * * * * * 3660 0 0 V 18 * * * * * * * * * * * * * * * * * 0 * * 18 0 * * * * * * 3719 0 0 Y 19 * * * * * * * * * * * * * 2276 * 3905 * * * 460 19 0 * * * * * * 3719 0 0 D 20 5816 * 966 3854 * 3911 4875 * 5396 * * 4163 * 4375 * 3551 3882 5677 * * 20 43 5093 * 2322 322 * * 3719 1000 0 I 21 4907 * * * * * * 1308 * 1367 2974 * * 5370 * * * * 5396 * 21 0 * * * * * * 3719 0 0 S 22 211 * * * * * * * * * * * * * * 2877 * * * * 22 0 * * * * * * 3719 0 0 Y 23 2472 * * 5101 * 2441 * * 3809 3979 * 4554 * 5173 * 1923 * 4986 * 3235 23 0 * * * * * * 3719 0 0 V 24 2984 4986 3759 3186 * 5144 * * * 4143 * * * * * 1518 * 2157 * * 24 0 * * * * * * 3719 0 0 V 25 * * * * * * * 560 * 2671 * * * * * * * 2603 * * 25 0 * * * * * * 3716 0 0 G 26 * * * * * 513 * * * * * * * * * * * * * 1741 26 0 * * * * * * 3718 0 0 R 27 5182 * * * * * 3632 * 2080 * * 5491 * 2674 1663 3806 3488 * * * 27 0 * * * * * * 3718 0 0 E 28 * * 2403 302 * * * * * * * * * * * * * * * * 28 0 * * * * * * 3718 0 0 L 29 * 4895 * * 940 * * 5428 * 1601 * * * * * * * 3820 * 5522 29 0 * * * * * * 3718 0 0 M 30 * * * 440 * * * * * 3600 4207 * * 2987 * * * * * * 30 172 3152 * 1585 585 * * 3718 2244 0 A 31 4207 * * * * * * 5089 1755 4895 * * * 5095 1378 5204 2782 * * * 31 0 * * * * * * 3718 0 0 L 32 * * * * * * * 1789 * 1339 2929 * * * 4846 * 5927 2913 * * 32 1793 491 * 1606 574 * * 3718 3428 0 G 33 * 5244 * * 2440 3512 2864 4664 * * * 4336 * * 5320 5149 * * * 1245 33 0 * * * * * * 3718 0 0 S 34 5095 4900 2979 * * 508 * * * * * 5149 * * * 3659 * * * * 34 58 4664 * 1585 585 * * 3718 1113 0 D 35 5424 4358 3531 2004 * 4279 4762 * 3390 5197 * 3626 2829 5411 * * 3714 4067 * * 35 36 5332 * 0 * * * 3725 1000 0 P 36 4831 * 1316 2002 * 3271 * * * * * 5043 2937 * * 5186 * * * 5540 36 19 * 6290 * * * * 3725 0 0 R 37 1831 5496 * 4238 5356 4785 * 5201 * 5474 * * 5735 5087 4193 2564 * 1935 * * 37 0 * * * * 0 * 3723 0 1000 V 38 3649 * * * 5439 * * 3871 * 3052 * * * * * * * 498 * * 38 44 5072 * 2000 415 * * 3865 1000 0 T 39 2746 * * 4203 * 5548 5377 * 2022 5615 5108 * * * 3469 2413 2886 4564 * * 39 31 * 5548 * * * * 3865 0 0 R 40 5214 * 2684 3293 * 1606 * * 5102 * * 3507 * 4109 2856 5084 4494 * * * 40 0 * * * * 0 * 3855 0 1000 L 41 * * * * * * * 4073 * 164 * * * * * * * 4378 * * 41 0 * * * * * * 3865 0 0 Q 42 * * * * * * * 4979 * * 659 * * 2893 * * * 2318 * * 42 0 * * * * * * 3865 0 0 F 43 * * * * 2893 5234 4622 * * * * * 496 * * 5129 4045 * * * 43 0 * * * * * * 3865 0 0 K 44 * * * * * * 5118 * 878 1541 * * * 5319 4100 * * * * * 44 0 * * * * * * 3865 0 0 I 45 * * * * * * * 1864 * 4072 5850 * * * * * 5234 685 * * 45 0 * * * * * * 3865 0 0 V 46 * * * * * * * 2088 * * * * * * * * * 387 * * 46 0 * * * * * * 3865 0 0 R 47 4836 5115 * * * * * * 3826 * * 2176 * * 1338 2733 4699 * * 4062 47 0 * * * * * * 3865 0 0 V 48 2098 * * * * * * 3860 * 5280 * * * * * * 5494 622 * * 48 0 * * * * * * 3865 0 0 M 49 * * * * * * * * * 47 4949 * * * * * * * * * 49 0 * * * * * * 3865 0 0 E 50 * * * 0 * * * * * * * * * * * * * * * * 50 0 * * * * * * 3865 0 0 M 51 4968 4047 * 3753 * * 5108 4472 * 1849 2893 3055 * 4041 * 4405 3472 * * 5115 51 0 * * * * * * 3865 0 0 L 52 * * * * 4268 * * * * 166 4139 * * * * * * * * * 52 0 * * * * * * 3865 0 0 E 53 * * 1956 430 * * * * * * * * * * * * * * * * 53 0 * * * * * * 3865 0 0 T 54 2034 * 5449 5280 * 5118 * 3831 4213 3895 6272 4481 * * 6064 1975 3121 4472 * * 54 0 * * * * * * 3865 0 0 L 55 2645 5017 * * 2781 * * * * 1297 4635 * * * * 3971 4668 4069 * 4214 55 0 * * * * * * 3865 0 0 V 56 1551 4570 * * 5375 * 4808 4979 * 4743 * * * * * 5108 4507 1863 * 2838 56 280 2505 * 1736 515 * * 3865 2806 0 N 57 2621 4979 4213 3836 5115 4560 * * * 4968 * 3100 * 4477 * 1757 3043 * * * 57 149 3353 * 1712 525 * * 3865 1888 0 E 58 5280 * 5850 1486 * 4256 4802 * 2691 * * * * 3461 2325 4813 * * * 5017 58 46 4985 * 1585 585 * * 3865 1437 0 G 59 4229 3961 * 3769 5427 3383 2993 * * 4790 * 1823 * 5265 3428 4367 * * * 3674 59 70 4409 * 870 1142 * * 3850 1530 0 S 60 4566 * 2280 2365 * * 3451 * * * * 2615 5088 3286 5387 2763 * * * * 60 139 3441 * 1585 585 * * 3850 2236 0 L 61 2755 4101 * 3805 * * * 5857 3868 2727 * 5749 * * 4230 4173 3576 1867 * * 61 0 * * * * * * 3850 0 0 A 62 2419 * 5960 1368 * 5088 3645 5091 5104 * * * * 4834 5387 3242 3695 * * * 62 113 4374 5221 1585 585 * * 3850 1504 0 V 63 4754 * * 2748 5575 5403 * 5443 4949 1836 * 4013 3655 4511 5059 * 5801 2316 * * 63 26 5812 * 1000 1000 * 0 3831 1000 1000 E 64 4670 * 5247 549 * * * * 5315 * * * * 3012 4298 5698 * 4972 * * 64 95 3969 * 1000 1000 * 0 3827 1335 1000 E 65 * * 4149 736 * * * * * 2748 4367 * * 3048 * 5315 * * * * 65 28 5721 * 1585 585 * 0 3827 1000 1000 L 66 4547 * * * * * * 2725 * 311 * * * * * * * * * * 66 92 5234 4832 3000 193 0 * 3877 1000 1000 R 67 * * * 3157 * * * * 1601 4016 5114 * * 4627 1343 * * 4925 * * 67 42 * 5114 * * * 0 3713 0 1000 M 68 4833 * 3392 2099 * * * * 3906 2269 2396 * * * 4826 4750 4332 4324 * * 68 41 * 5174 * * * 0 3692 0 1452 E 69 4433 * 1775 1304 * * * * 3203 * * * * * 4755 4716 3780 * * * 69 0 * * * * * 0 3648 0 1565 R 70 * * 4716 4755 4433 * * 3101 * 2508 * 1591 * * 2646 * * 3403 * * 70 0 * * * * 1372 705 3648 0 1565 D 71 3272 * 1639 1234 * * * * * * * * * 3966 4329 * 4769 * * * 71 0 * * * * 1000 1000 3694 0 1186 N 72 * * * * * * 3233 * 3516 * * 3387 * 1338 2113 4691 4468 * * * 72 54 4762 * 1000 1000 0 * 3760 1000 1000 L 73 * * * * * * * 4668 * 58 * * * * * * * * * * 73 0 * * * * * * 3756 0 0 K 74 5752 * * 2385 * * * 3797 3094 4213 5449 * * 2897 2602 3869 * 3479 * 3896 74 0 * * * * * * 3761 0 0 Q 75 4620 * 4619 4210 * 4742 * 5419 3551 2896 3935 5358 * 4778 3236 3520 1918 * * * 75 0 * * * * * * 3750 0 0 E 76 4944 * 4602 1113 * * * * 5120 * * * * 1577 * * 4022 4704 * * 76 40 5196 * 0 * * * 3750 1000 0 V 77 4405 * * 4737 4500 * * 4849 4181 2394 * 3957 * 4206 * * * 2788 * 1610 77 0 * * * * * * 3644 0 0 E 78 * * 2531 526 * * * * * * * * * 2917 * * * * * * 78 0 * * * * * * 3721 0 0 G 79 * * * 3756 * 3200 3858 * 3592 * * * * 2742 1165 * 3837 * * * 79 0 * * * * * * 3372 0 0 L 80 * * * 3614 * * * 2865 2574 844 4156 * * * * * * * * * 80 0 * * * * * * 3241 0 0 R 81 * * * * * * * * * * * * * 2436 295 * * * * * 81 0 * * 0 * * * 3094 0 0 //