HHsearch 1.5 NAME c4kdwA_ FAM FILE c4kdwA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4kdwA_.a3m DATE Sat Oct 5 08:26:39 2013 LENG 102 match states, 102 columns in multiple alignment FILT 106 out of 662 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.6 EVD 0.4463 -0.6808 SEQ >ss_dssp CCCCEEEECCSSTTSEECHHHHTSEEEEEEEEESTTCCTTCEEEEEETTEEEEEECCTTSEEEEEEEHHHHHHCCEEEEEEEEECTTCCEEEEEEEEECE EC >sa_dssp DEDCEBDCDDACEEDCADEECCEDEBDACBCADDEDBDEDBDACAEADEDDCECDBDEECDBDBEACAECACECDDBDACADADCEEEEECEBDBEBEBE DE >ss_pred CCCCEEEECCCCCCCEEEHHHCCCCEEEEEEEECCCCCCCCEEEEEECCEEEEEEECCCCEEEEEECHHHHCCCCCEEEEEEEEECCCCCCCCCCCEEEE EC >ss_conf 9875377417646973804551798699988523654799889999999899999938961999955787337985889999990889830102415576 09 >Consensus xtxptitixxixxDxvinxxExxxxxtitGtxxxgxaxxGxxVtvtixgxxxxaxvxxdGxwsvxvxxxxLxxxxxxxvxvtxtDxaGNxxtxsxtxxxx vD >c4kdwA_ ATAGTVTVNAITSDDVINASEAAGTVAVSGTATGGDIAEGDTVTLEINGETYTTTVDANGEWSVDVAGSDLAADTAFDAVVTSSDAAGNTVDTTGSSTHT VD >UniRef50_C5S4H3(1112-1190:1762) Calcium-binding domain-containing protein (Fragment) n=1 Tax=Actinobacillus minor NM305 RepID=C5S4H3_9PAST E=3e-06 s/c=0.67 id=24% cov=78% ----------------------HEDIATVSGVVSGTAKEGDVVLLNIGNKTLKTTVNSDLSFSAIVSKQTLSTAEQISATLETTDRSGKAISVFDQENYA V- >UniRef50_C5S4H3(667-769:1762) Calcium-binding domain-containing protein (Fragment) n=1 Tax=Actinobacillus minor NM305 RepID=C5S4H3_9PAST E=9e-07 s/c=0.53 id=26% cov=96% ----AVSVNEVNGSKTISTENLNKTSLISGTLTYDEQDINAkdiQVKVSLNGKEYDATV-SDKKWSLNLPineSSLIEGNNHLKVNVMAKDVAGNTATAE SAVDFQAD >UniRef50_A3VCJ6(664-758:1345) Putative uncharacterized protein n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VCJ6_9RHOB E=0.0002 s/c=0.49 id=25% cov=94% -TSVTATLSGTGGDGIANYAETVAGLTLTG-----IAEPGASVNVSIGGVVRPAAVAANGSWSVTYPQGSIAS-GEYTANVSVTSTDAAGNTATATTTVS ID >UniRef50_A6FPL9(379-483:1074) Putative uncharacterized protein n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FPL9_9RHOB E=7e-06 s/c=0.49 id=25% cov=91% ----TISIDTIHPGLTINASAVGNRGVLNGDiarneglIVTGTSEPGTTVTVSMHGQTQHVPAGASGTWRAEFDPFALPDTQfDATITAVTQDAAGNVSR ASET------ >UniRef50_C1MAS6(2519-2621:2753) Putative uncharacterized protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1MAS6_9ENTR E=3e-05 s/c=0.48 id=22% cov=98% ---ASIVVDKIAGDNHISRAESHDTVTHITGSVSGDVNDGDHIKALVNGHQYDAILHqgiNGLTYDIEADTSAFRAGHNrVNVLVEAHDNHGNITPYSQT LNVTMD >UniRef50_C5SGE7(37-108:665) Putative uncharacterized protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SGE7_9CAUL E=1e-05 s/c=0.71 id=19% cov=72% ----ALKIDPLFGDHMV--LQRGKPVSLRG-----DAPAGTTITVRFGTASVTAKADSGGQWRATLPP--VTDGASGTLEVSASD--------------- -- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 561 * * * * * * * * * * * * * * 1633 * * * * 1 0 * * * * * * 3610 0 0 T 2 4594 * * * * * * * * * * 3892 3620 * 5511 2670 665 * * * 2 0 * * * * * * 5387 0 0 A 3 1100 * * * 5537 * * * * 3206 * * 2998 4474 * 3304 3851 3992 * * 3 0 * * * * * * 5742 0 0 G 4 2282 * 6213 4824 * 3461 * * * 5225 * * 898 * * 5901 * 3742 * * 4 0 * * * * * * 6033 0 0 T 5 2113 * * 5305 * 4305 * 6157 * 6196 * * 6194 4971 * 2342 1414 4402 * * 5 26 5827 * 1000 1000 * * 6317 1000 0 V 6 5041 * * * 5938 * * 1195 * 2370 * * 5198 * * * 5891 1842 * * 6 0 * * * * * * 6356 0 0 T 7 4606 * 3376 6109 * 5087 5507 6315 5559 5651 * 4725 * 5487 5855 3591 901 4405 * * 7 14 * 6673 * * * * 6380 0 0 V 8 6435 * * * 5375 * * 1051 * 2170 5321 * * 5950 * 4844 5024 2711 * * 8 14 * 6693 * * 0 * 6414 0 1000 N 9 4253 * 1332 4035 * 5453 5944 6755 * 5951 * 2062 * * 6063 3590 3517 * * * 9 61 4604 * 975 1025 0 * 6412 2415 1000 A 10 4009 * 3188 5339 6382 6101 * 5549 4988 4166 6457 6917 1911 6659 6589 3488 2076 4785 * * 10 56 4723 * 1182 838 * * 6410 2108 0 I 11 6073 * 5146 * 5105 * * 1452 5945 2996 * * 4853 6283 * 5313 5216 1638 * * 11 11 7086 * 1000 1000 * * 6413 1000 0 T 12 2594 6344 3853 4712 3883 3218 6015 * 5995 * * 5302 * 6957 * 2700 1911 5332 * 5047 12 40 * 5185 * * * * 6437 0 0 S 13 4135 * 2986 6374 6686 1252 6411 6587 6718 6658 * 3730 5065 * * 3339 3095 6304 * * 13 33 6820 6159 1000 1000 1329 732 6435 1000 1969 D 14 * * 351 * * 3936 * * * 5362 * 4168 * * * 4430 6436 6322 * * 14 37 5935 6817 0 * * 0 6402 1000 1994 D 15 6985 * 1876 6318 * 2590 5416 * 4990 6022 * 1309 6384 6409 * 5623 5430 * * * 15 0 * * * * * 0 6455 0 2319 V 16 5611 * 6465 * 4383 6523 4548 2207 * 3802 4755 4918 * * 5739 * 3337 1500 6737 5170 16 15 * 6603 * * 1735 515 6471 0 2319 I 17 5371 * 6028 * 6336 * * 1457 6149 1791 * * * * * * 5192 1981 * * 17 49 * 4890 * * * 0 6494 0 2226 N 18 6472 * 3310 * * 4082 * * 5943 6109 * 704 * * * 3183 4103 5973 * * 18 0 * * * * 1090 916 6477 0 3376 A 19 1741 * 6171 6622 5657 3845 5490 3125 5606 4016 * 4583 * 3217 4765 4879 4638 4104 * 4327 19 17 6379 * 0 * 943 1059 6516 1000 2385 S 20 1896 6216 3306 4084 6444 5489 * 5313 4167 5318 * 3767 5579 5431 * 3304 3012 3729 * * 20 17 * 6439 * * * 0 6522 0 1489 E 21 5294 * 3087 593 6545 6476 6153 5445 6180 5951 * 4657 6028 5813 * 5571 6470 * * * 21 60 5607 5634 1585 585 1329 733 6524 1204 1973 A 22 1934 * * * 5449 4538 4731 4806 4659 3711 * 5587 6115 4166 4268 2328 4366 3621 * 6494 22 60 6435 5099 0 * 393 2070 6517 1000 2312 A 23 2962 * 4052 4949 * 2335 3835 * 3338 3878 * 4280 * 2894 6534 4010 3776 6395 * * 23 14 * 6662 * * * 0 6550 0 2065 G 24 2804 * 3832 4257 * 2740 6657 * 3587 5308 6525 4078 * 2897 6456 2984 3383 5146 * * 24 49 6803 5338 0 * 1152 862 6545 1000 2560 T 25 3710 * 2873 4218 * 2294 5105 4621 5360 4978 6164 4833 3470 6224 6041 3583 2713 * * * 25 0 * * * * 445 1914 6535 0 2516 V 26 5858 * * * 4527 6079 * 2786 5422 2490 * 5464 5643 2880 * 5148 2294 2577 * * 26 0 * * * * 0 * 6592 0 1000 A 27 4448 * 6048 5116 * * 5507 5100 * 3987 * 4921 4406 4185 5399 5640 1209 2438 * * 27 18 * 6313 * * * * 6583 0 0 V 28 * * 6014 5081 * * 6238 1526 * 1683 5517 * 4733 * * 5509 4561 2650 * * 28 0 * * * * * 0 6577 0 1000 S 29 5141 * 6844 * * 5527 * 3128 4931 * * 3931 * 4422 4761 1872 1629 4365 * * 29 37 6091 6510 0 * * 0 6577 1125 1000 G 30 6281 * * * 5223 394 * 6285 * * * * * 6410 6448 3977 3324 * * * 30 87 6255 4467 2000 415 922 1082 6574 1000 1586 T 31 6883 * 6021 6278 * 2553 6183 4847 3826 * * 7158 4480 5682 6685 2747 1283 4929 * * 31 224 5169 3108 2252 340 1170 848 6539 1799 2991 A 32 3452 6671 6353 * * 6137 6245 3295 * 4569 6206 * 6496 * * 2870 1741 1974 * * 32 98 5581 4490 589 1578 * 0 6555 1575 4151 T 33 4772 * 4817 4405 3560 4664 * 4946 4776 4325 * 6208 6427 * * 2583 2015 2335 * * 33 406 * 2027 * * 2738 234 6575 0 4403 G 34 3634 * 5629 * 5631 1324 * 4839 * 5779 * 3560 5633 * 4389 3208 3498 4778 5783 5480 34 80 * 4205 * * 2314 324 6384 0 5325 G 35 2777 * 4493 4942 5996 933 * * 4932 3989 * 4911 * 4551 * * 5828 4365 * * 35 47 * 4962 * * 930 1074 6596 0 5043 D 36 3915 * 1525 3312 * 4479 5585 6035 5203 * * 2841 4358 * * 3872 3615 5056 6762 * 36 41 * 5155 * * 335 2270 6679 0 4493 I 37 1183 * 6132 * 5174 4087 6056 3860 * 4648 * * 6460 6243 * 3649 4918 2339 * * 37 28 * 5681 * * 1045 956 6676 0 3027 A 38 3040 * 4322 1567 * 4366 4641 4764 3109 * * 3983 6828 3851 * 3747 4888 * * * 38 23 * 5992 * * 1336 727 6779 0 2830 E 39 2508 * 2980 4195 * 5600 * 5384 4418 4647 * 4225 2174 4154 6631 * 3657 3457 * * 39 0 * * * * 1208 818 6796 0 2759 G 40 5494 * 5530 6708 * 566 * 5646 * 4809 6260 4163 5060 6464 * * 3988 5077 * 6304 40 16 * 6492 * * 1535 610 6722 0 1994 D 41 3074 6110 1811 3535 * 6488 * 6683 6361 7067 * 5469 6503 3686 6248 2696 3283 3767 * * 41 18 6355 * 1585 585 * 0 6722 1000 1967 T 42 4553 * 6591 4543 * * 5452 3491 5224 4402 7443 * 3697 3500 5049 3147 1910 2859 * * 42 0 * * * * 0 * 6816 0 1967 V 43 6369 * * * 6209 6034 * 2651 * 3517 6737 6242 * 6691 * * * 556 * * 43 0 * * * * * * 6765 0 0 T 44 5061 * 5102 3440 6696 * * 4707 3953 5505 * 3806 * 4276 5014 4091 1172 4118 * * 44 0 * * * * * * 6765 0 0 L 45 4721 * * * * * 6209 2250 * 1904 6151 * * * * * 6242 1172 * * 45 29 5643 * 3480 135 * * 6765 1581 0 E 46 6727 * * 4684 6257 6034 5451 4668 4259 4344 4972 4849 * 4122 7098 2492 1426 3840 * 6831 46 30 5596 * 1549 603 * * 6765 1675 0 I 47 5797 6221 5024 * 3001 6034 * 1661 * 2293 5548 6209 * 6257 * 6691 7686 2281 * 6791 47 74 4765 6221 922 1082 * * 6765 2594 0 N 48 3944 * 3340 6733 6633 1561 4804 6237 6956 6913 * 1612 * 5779 6323 5476 4966 * * * 48 49 4903 * 515 1736 0 * 6743 2636 1000 G 49 5202 * 3021 6865 * 813 4854 6391 * 6831 * 3533 6870 6034 * 3951 4587 * * * 49 47 4965 * 2143 370 * * 6765 2372 0 E 50 4365 6221 * 3586 6034 5184 4280 5451 2543 6225 * 3911 * 2595 5630 4418 3716 2571 6727 * 50 11 6984 * 2322 322 * * 6765 1000 0 T 51 3836 * 4610 3694 6713 * 5984 3827 5190 6347 * 4065 4187 4904 5228 3279 1665 3811 * 6391 51 41 5154 * 1707 528 * * 6765 2161 0 Y 52 5075 * * 6742 3376 * 4405 4115 5499 3081 6208 * * 5525 4752 4213 5094 3585 6389 1440 52 95 3977 * 1100 906 * * 6765 3243 0 T 53 4296 6221 4638 5305 5062 6257 4331 5562 3690 5699 * 4620 6516 3432 4951 3092 1573 5614 * 6750 53 13 6758 * 0 * * * 6765 1000 0 T 54 1410 * * * * 2820 * * * * * * 6369 * * * 1428 3345 * * 54 35 7241 5833 2322 322 * * 6765 1000 0 T 55 4967 * * 4272 * * * 4013 3676 4695 * 5136 4883 3577 4906 4182 1485 2779 * * 55 33 6575 6351 0 * 0 * 6754 1000 1643 V 56 2308 * * * * * * 4130 * 4207 5601 6844 * 6375 * 5445 5207 748 * * 56 239 3368 4171 1886 455 0 * 6749 3462 1000 D 57 3287 * 1770 4620 6503 2511 5538 6513 5962 6581 * 2742 6333 4245 7098 5716 4133 5617 * * 57 132 3905 5580 1760 505 198 2960 6730 3033 3294 A 58 1697 * 3638 3790 * 2672 5411 6139 5546 * * 4087 5735 5247 5706 2869 5527 4598 * * 58 29 * 5653 * * 463 1864 6734 0 1857 N 59 3601 * 1305 6419 * 3256 6095 * 5435 4912 * 2260 * 4703 * 3846 6831 * * * 59 71 6581 4724 1585 585 510 1747 6747 1000 2014 G 60 6338 * * * 6338 502 * * 4931 2493 * 5487 * * 6588 * 5258 * * * 60 0 * * * * 260 2601 6729 0 2720 E 61 4506 * 5846 5355 6864 3091 5063 5181 4705 * 6963 2468 * 4694 4599 2678 2144 4599 * * 61 41 5150 * 1876 459 * 0 6757 2096 1000 W 62 * * * * 2280 * * * * * * * * * * * * * 626 2776 62 17 * 6416 * * * 0 6757 0 1000 S 63 4944 * 6231 4219 * 6699 6766 * 3928 6575 * 6281 * 2930 4174 1148 2979 5157 * * 63 0 * * * * * 0 6739 0 1520 V 64 2725 * * * 4598 * 6708 2215 * 2577 * * * * 6222 * 4391 1727 * 4274 64 13 6812 * 0 * 784 1254 6739 1000 1520 D 65 3753 * 2675 2760 * 6093 * 4994 5184 6074 7218 4137 4292 4780 5188 3509 2200 4772 6289 * 65 22 6667 7473 0 * * 0 6757 1000 1000 V 66 4947 * 5566 * 3526 5209 * 2910 * 2449 5735 * * * * * 5130 1154 * 5655 66 0 * * * * 955 1046 6762 0 1450 A 67 3223 * 3100 5227 * 5768 * * 5347 6518 * 4655 1476 6353 6366 3027 2867 6337 * * 67 60 6384 5134 1585 585 * 0 6757 1000 1000 G 68 1837 * 4827 5697 * 2911 * * 5495 6616 * 5403 2731 5101 * 2903 2940 4931 * * 68 80 6879 4451 2000 415 1675 542 6789 1000 2416 S 69 2067 * 4307 4366 6202 3871 5731 * 4303 4127 7105 4685 4720 4025 * 2394 3519 5030 * * 69 52 * 4812 * * * 0 6707 0 3256 D 70 2991 * 1875 2610 * 5953 * 6597 4234 4616 5626 5689 * 4351 6371 3337 4500 4070 * 6159 70 56 5310 6274 1823 479 3127 175 6592 1639 3852 L 71 4932 * * 6475 4513 6537 * 3664 * 603 * 6588 6127 * * 5514 5787 3326 * * 71 52 5505 6202 537 1686 94 3985 6570 1667 4069 A 72 2567 * 5755 4728 6505 7010 * 4028 4506 2439 5729 6618 3103 3219 5275 4113 4480 3551 * * 72 172 3315 6380 838 1183 0 * 6765 3886 1533 A 73 1491 * 4364 4669 * 2670 4850 * 4388 * * 4266 5913 4581 5453 3431 3596 6920 * * 73 123 4025 5635 1249 788 0 * 6745 3237 1000 D 74 3601 * 1869 3295 6949 2533 4668 * * 3498 6962 3117 6532 7235 * 4465 5645 * 5201 * 74 88 4080 * 867 1147 1067 936 6747 2991 1680 T 75 4633 * 4202 4272 6854 1395 5516 * 4592 6658 * 3397 2989 4415 6671 4588 4091 * * 6202 75 151 3413 7462 942 1060 0 * 6757 3732 1000 A 76 3309 * 2510 3093 * 6251 4835 6069 3674 6475 6746 3768 5377 5165 5310 3155 2891 4416 * * 76 77 4874 5813 552 1652 * 0 6770 2285 1000 F 77 4204 * 6682 7179 4340 3074 3649 2849 * 3745 * 4734 6812 5581 * 6882 5252 2589 5651 2476 77 22 6020 * 1000 1000 0 * 6718 1612 2143 D 78 4198 * 3965 3598 * * 4956 4475 4434 7229 6889 2844 4731 4663 5415 2703 2033 5469 * * 78 15 6553 * 0 * * * 6765 1000 0 A 79 2245 * * * 6255 * * 2455 * 2918 5788 * * 6776 * * * 1489 * 3684 79 0 * * * * * * 6767 0 0 V 80 6030 * 6743 3255 6865 6311 5985 4497 4341 5590 6784 4107 6879 4515 4439 2646 1597 4303 * 6297 80 27 5775 * 561 1635 * * 6767 1665 0 V 81 1918 * * * 6481 * * 2996 * 3654 6131 * * * * * 6204 1025 * * 81 31 5558 * 1000 1000 * * 6767 1607 0 T 82 6681 * 3958 3897 * * * 5066 4324 5450 6399 6388 * 4183 4619 2789 1397 3445 * 5612 82 24 * 5939 * * * * 6767 0 0 S 83 1711 * * 6524 * 3485 * 4712 * 4415 * 6608 * 6935 6469 3615 3371 1731 * * 83 0 * * * * 970 1030 6764 0 1610 S 84 * * * * 5541 6306 3468 6789 5017 6329 * 4758 7267 3857 5956 2747 982 4674 * * 84 43 5574 6890 1000 1000 * 0 6829 1563 1000 D 85 5066 * 374 6675 * 3797 * * * * * 4259 * * * 5578 * 4926 * 6531 85 17 6435 * 0 * * 0 6730 1000 1577 A 86 1946 * 5409 5765 * 3817 6820 3897 4364 4297 6543 3760 4015 4755 6599 3559 4140 3265 6296 * 86 30 * 5594 * * 896 1112 6732 0 1577 A 87 702 * 6428 4872 5415 * 4732 * * * 6758 4022 6234 6506 * 3377 * 3916 6539 6623 87 25 * 5866 * * 1535 611 6674 0 2092 G 88 5397 * 6766 * * 255 * 7290 6139 6020 * 4475 6734 * * 5975 * 6761 * 6196 88 31 * 5566 * * 1925 441 6688 0 2359 N 89 4721 * 6447 4515 * 6429 4232 * 5419 * 6263 396 * 5421 * 6751 6266 * * * 89 0 * * * * 628 1503 6683 0 2802 T 90 3558 * * 4387 6673 3739 5160 4346 6470 4865 * 6870 3327 4036 4654 2448 2508 3444 * * 90 41 6708 5775 0 * 0 * 6701 1000 1470 V 91 1918 * 4399 7203 5480 2633 * 4525 * 5491 6018 3563 * 4639 6779 2636 3762 4380 * * 91 34 * 5418 * * 0 * 6692 0 1459 D 92 4633 * 4125 4824 6600 * 4653 6521 4471 6257 * 4640 3922 5067 6142 2232 1415 6636 * * 92 19 * 6288 * * 0 * 6709 0 1988 T 93 1397 * 6389 6266 6286 6274 5589 3836 4965 4418 * * 6306 5141 6219 4189 3286 2523 * 6114 93 12 * 6901 * * 0 * 6661 0 1000 T 94 4926 * 5132 4080 6501 5333 6130 6776 4615 * 6490 5199 3591 4016 * 1585 2077 5270 * * 94 0 * * * * 0 * 6678 0 1000 G 95 2110 * 2616 4599 * 3844 4555 5006 6521 4943 * 5186 * 4192 * 3654 2435 5023 * * 95 18 * 6374 * * * * 6690 0 0 S 96 4050 * 3781 4087 5078 6641 5156 * * * * 5464 3360 4541 6661 2491 1457 5300 * * 96 0 * * * * 0 * 6645 0 1000 S 97 5523 * * 3507 4566 5228 2998 3059 3051 2743 * * 5693 3457 3925 5202 4561 4048 * * 97 0 * * * * * * 6411 0 0 T 98 4078 * 2996 4788 * * 6414 6132 6187 * 6178 2766 4037 6053 * 3018 1497 5329 * * 98 20 * 6177 * * * * 6411 0 0 H 99 * * * * 2563 * 6469 3316 * 3608 * * * * * * * 1708 * 1595 99 0 * * * * 0 * 6318 0 1000 T 100 4531 * 3474 4788 * 6413 4535 6332 6126 4092 * 4408 * 3651 6420 2825 1455 4440 * * 100 0 * * * * * * 6307 0 0 V 101 4074 * * * 6189 * * 1975 * 3205 5593 * * 5669 * * 4145 1098 * * 101 0 * * * * * * 6301 0 0 D 102 * * 175 4606 * * * * * * * 3775 * * * * * * * * 102 0 * * 0 * * * 5854 0 0 //