HHsearch 1.5 NAME c4jivD_ FAM FILE c4jivD_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4jivD_.a3m DATE Sat Aug 17 08:20:49 2013 LENG 93 match states, 93 columns in multiple alignment FILT 104 out of 202 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.9 EVD 0.4809 1.2562 SEQ >ss_dssp CCBCBTTCEECCBTTBCCEEBCCCCSSCEETTEEBCBTTCEEEEEEETTEEEEEEEBCCCCSSCEETTEEBCBTTCBBTTSCBEECCCSCCCC >sa_dssp ECAABCDCDACEBEEBDDBDADDCBEECEBEEDCAABDDBDBCEBDCEEDEECEBCADDCBEEDEBDEDCAACDDBDBECCCDADDECECEBE >ss_pred CCEEEECCCCCCCCCCCCCEEEECCCCEEECCEEEEECCCCEECCCCCCCCCCCCEEECCCCCEEECCEEEEEECCCCCCCCEEEECCCEEEC >ss_conf 945894374568998577313304552017688501118816344788888766267604575899989988637720117799807825709 >Consensus xxxxxxGDxxtxhggxxxxxVxtGSxxvxixGxpaArxGDxvxcxxcxxxxxxxxxIxxGsxxvxinGxpaArxGdxxxCGaxixgSxxVxiG >c4jivD_ GNGIVVGHLGTDHDGFPPTPVTAGSATVRYDGIPAARLGDPLAPHDKPKHPSHGRAIAAGSGTVMIDGKPAARVGDAVDCGGVLQGASSVNIG >UniRef50_Q76YN3(12-92:97) Putative uncharacterized protein 5.4 n=1 Tax=Aeromonas phage Aeh1 RepID=Q76YN3_9CAUD E=3e-09 s/c=0.77 id=27% cov=85% -----------GPGPWKPSKVVGTSSTVFAEGKQiVVRQDDQVIKHERPDGPDwKQGKVIASTSKVFVEGKPIAQIGDVCTDGEILVKSAT---- >UniRef50_Q71TA3(10-85:94) UpfC n=3 Tax=root RepID=Q71TA3_BPP1 E=2e-07 s/c=0.75 id=25% cov=83% --------ICSGHGGFPSRPPVESEPLLKVNGVEVLVDGKQYAQHTD-GNSTHGGQAISTRAWFTVNGKGIVCVGDPVSCGSTVA-------- >UniRef50_D0YY14(1-94:490) Pyocin killing protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YY14_LISDA E=0.0001 s/c=0.51 id=27% cov=96% -----MGDIITvGCKTSTGGSVITGSGHVKINGLSQALLGDTATClCGSKSCRGQGPIVQQSSRAANINGTNVARVGDfvDTGCGNcyLIASNHNVSLG >UniRef50_A8GG78(74-150:444) PAAR repeat-containing protein n=1 Tax=Serratia proteamaculans 568 RepID=A8GG78_SERP5 E=2e-13 s/c=1.00 id=30% cov=80% ------------------GVLADGSPNVYINGRPAIRA--HISTGECSEDGPAKKVVAQGSAKVYINDFPAARINDLLACSAEIhTGSPNVIIG >UniRef50_Q7MZR1(7-84:91) Similar to unknown protein n=7 Tax=Enterobacteriaceae RepID=Q7MZR1_PHOLL E=1e-08 s/c=0.78 id=22% cov=72% --------------------VISASSSIEIEGKRVALLNDLVS---CPLKGHGINRIVKANSQCISDGKPVAFDKALCQCGCYVISSTT---- >UniRef50_D2TRF7(4-84:484) Putative uncharacterized protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TRF7_CITRO E=0.001 s/c=0.55 id=24% cov=58% --------------------ILTGADGHSIHGQATARNGDKYICGKDKQIYH----IAGGQPNYYIHGVQAAGTAHS---------------- >UniRef50_C6WRM5(4-100:103) PAAR repeat-containing protein n=6 Tax=Actinomycetales RepID=C6WRM5_ACTMD E=3e-07 s/c=0.58 id=27% cov=98% --AARVNDKTT-HGGTIGPPKSAKAMTVLVQGLPAAVVSAQHVCVIPPHAIASVANLVlpgkSLASRVFVGGLPAAVVGDQTSCGAKIIPIPplrTVFVG >UniRef50_C6BQ31(6-84:136) PAAR repeat-containing protein n=4 Tax=root RepID=C6BQ31_RALP1 E=4e-05 s/c=0.63 id=29% cov=86% ---IVLGDKTT-HGG----TVITADMTSTTHGKAMARIGDMTVCPKCKGTFPISEATSIVSDS---GGRGYARHLDGTACGAKLLASQSL--- >UniRef50_C7BVC5(16-103:127) Helicase n=1 Tax=Synechococcus phage S-RSM4 RepID=C7BVC5_9CAUD E=8e-06 s/c=0.59 id=29% cov=88% -----------GHQPPTPLPAPAGfSSNVFVNGQPVHHVGNTMVIHPIPGTFPpiphlPPDVIIEGYATVLCNGTPLAKFLSKTQHGSmVMQGSRNVFV- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1607 0 0 N 2 2192 * * * * * * * * * * 786 * * * 2314 * * * * 2 0 * * * * * * 3102 0 0 G 3 712 * * * * 2720 * * * 3824 5244 * * * * 4685 * 4219 4374 * 3 0 * * * * * * 4161 0 0 I 4 1388 * * 3864 * * * 1150 * 5947 5308 * * * * * * 4126 * * 4 0 * * * * * * 4671 0 0 V 5 4810 * * * * * * 5492 4829 4367 * * * * 1138 4524 * 1472 * * 5 0 * * * * * * 4671 0 0 V 6 * * * 4481 4497 * * 4389 * 1506 3421 * * 5321 * * 4780 1488 * * 6 0 * * * * * * 4802 0 0 G 7 * 4937 * * * 246 * * * * * 3420 * * * * 5014 * * * 7 0 * * * * * * 5053 0 0 H 8 * * 194 * * * 5815 * * * * 4114 * 5160 * * * 5464 * * 8 366 * 2158 * * * * 5053 0 0 L 9 5421 * * * * * * 2108 2282 3114 * * 5533 4845 6010 4428 2713 3063 * 4916 9 262 * 2592 * * 0 * 5021 0 3236 G 10 2786 3157 2926 * * 3018 3247 4850 * 4349 * * 5254 * * 5978 1962 * * * 10 20 * 6186 * * 285 2482 5109 0 2654 T 11 5480 * * * * * * 3373 * * * * * 4322 * 2558 597 * * * 11 278 5054 2786 0 * 966 1035 5438 1000 1480 D 12 3629 5419 2305 * * 1102 * * * * 5482 4316 * * * 2887 5667 * * * 12 46 5007 * 2322 322 0 * 5438 1094 2978 H 13 6114 5345 5876 * * 3316 509 * 5682 * * * 5366 5558 5296 4304 * * * * 13 0 * * * * * * 5586 0 0 D 14 4164 * 4469 5253 * 669 * * 4727 * * * 2998 5133 * 6085 4723 * * * 14 133 * 3502 * * * * 5745 0 0 G 15 5178 3651 * * * 754 5890 5730 * * * 5187 3029 * * 5030 3583 * * * 15 434 * 1943 * * * 0 5810 0 2823 F 16 * 5642 * * 2991 * 4202 3326 * 3760 4324 * 3208 6116 * 2444 3681 4021 4036 3847 16 265 6246 2694 1000 1000 * 0 5573 1000 4025 P 17 * * * 5034 4874 4140 4890 3014 4017 4082 * * 1154 * * * 3447 4074 * * 17 0 * * * * * 0 5402 0 4327 P 18 2847 * * 5810 * 3073 * * * * * * 1215 5050 * 2428 3689 * * * 18 29 5637 * 2000 415 3772 110 5485 1000 4327 T 19 6159 * * * * 1056 * * * 4452 * 5372 3849 4986 3823 3252 2657 * * * 19 40 * 5207 * * 373 2133 5632 0 4274 P 20 3295 * * 5184 * * * 5223 2749 5588 * * 1779 5004 3645 5143 3441 2723 * * 20 61 7070 4870 1585 585 340 2250 6042 1000 2859 V 21 4816 * * 6242 * * * 1630 5734 3819 * 6340 5916 4909 * 6463 * 1104 * * 21 0 * * * * * 0 6261 0 2445 T 22 3700 5358 * 5736 * 6234 6643 1913 * 2969 5855 4573 4981 5457 6639 4150 3670 2402 6022 * 22 0 * * * * 2006 413 6249 0 2445 A 23 3534 * 5588 3759 * 3368 * 6855 6072 6802 6193 5609 * 4699 4281 1936 1717 * * * 23 14 6717 * 0 * 1546 605 6263 1000 2149 G 24 2855 6403 * 6221 * 535 * * 6019 * * * * * * 4238 4357 5880 * 6331 24 26 5831 * 0 * 0 * 6292 1000 1754 S 25 2842 5598 4393 5192 6261 5912 * 5374 * * * 5357 * 5335 6479 686 * 5098 * * 25 0 * * * * * * 6306 0 0 A 26 3113 6367 4764 4629 6458 3522 * * 6433 5107 5165 6921 2114 3987 6005 2005 4408 * * 6158 26 71 * 4373 * * * * 6306 0 0 T 27 6915 * 2656 5385 * 4791 4974 5839 4547 5377 * 2289 * 5496 5339 3355 1701 * * * 27 15 6573 * 0 * 1732 517 6263 1000 2208 V 28 * * * 5549 4801 5906 4742 4539 6227 4058 3816 * * * 5136 4093 5207 821 * 5565 28 40 6202 6192 2000 415 * 0 6267 1000 1783 R 29 5954 * 5312 6354 2163 * * 7107 3760 2497 6817 4396 * 4419 3874 3544 3092 5014 * 4067 29 0 * * * * 1737 515 6250 0 2113 Y 30 5206 * 6332 5214 3918 * * 1382 * 5808 5172 5877 * * * * 3318 1863 5626 5288 30 0 * * * * 788 1248 6273 0 1783 D 31 5008 * 2946 3383 * 2793 4189 * 6013 * 4730 1341 5308 3814 * * * * * * 31 47 5647 6399 3269 158 * 0 6330 1673 1000 G 32 6715 * 6811 * 5957 446 6502 * 4828 * * 4352 * 6654 6512 3237 6746 * * * 32 0 * * * * * 0 6318 0 1477 I 33 6893 * * * 5431 * * 2932 1872 3235 4502 4585 * 3763 2148 * 7006 3942 * * 33 0 * * * * 1000 1000 6318 0 1477 P 34 2840 * * 5167 6238 3925 * * 5561 4400 * 6465 850 6169 4253 4250 * * * * 34 20 6169 * 0 * * 0 6321 1000 1000 A 35 1243 * * 6262 4687 * * 3078 * 4431 6270 * 5642 5414 * * 5442 1829 * * 35 0 * * * * * 0 6321 0 1000 A 36 543 7188 * * * 6155 4415 4896 * 3662 5284 * * 6394 * 4749 * 4487 6175 * 36 0 * * * * * 0 6321 0 1000 R 37 6614 5302 * * 6155 * 4247 * 4918 3511 6867 * * * 745 5409 4901 3333 * 5997 37 19 6262 * 2807 222 0 * 6321 1000 1000 L 38 2214 * 5365 4112 6264 * 7052 4976 3924 3181 4346 6049 * 3650 5241 * 6705 1766 * * 38 84 5643 4783 4930 48 * * 6337 1525 0 G 39 4213 * 4179 6358 * 555 5702 * 6469 6392 * 4553 * * * 5114 4050 6100 * 6755 39 53 5252 6712 4789 53 * 0 6328 1906 1912 D 40 5134 5384 520 5002 * 5094 4970 * 5461 4990 * 5110 * 6535 * 6280 6642 4605 * * 40 0 * * * * 895 1113 6342 0 2368 P 41 4278 * 3315 5198 6475 4003 5645 4818 3886 3786 2871 * 2680 3877 4239 4284 4282 4834 * * 41 154 5471 3671 4338 73 923 1081 6305 1586 1716 L 42 2926 5382 * 7250 4455 5183 4206 4293 * 3419 5772 * * * * 6764 3539 1330 5498 4932 42 66 5974 5107 5315 37 1958 429 6256 1459 3014 A 43 2389 * 4035 6338 5565 6154 5492 3327 5667 4333 4816 6069 * * * 2527 3075 2928 5420 6363 43 99 * 3911 * * * 0 6295 0 3255 P 44 4086 1104 6319 3544 * 5980 6027 4640 5229 4917 * 6721 3563 5959 * 4545 4696 4190 * * 44 159 4767 3885 1273 771 1645 556 6265 2132 3851 H 45 5281 2424 * 5754 * 5122 2050 * * 5975 * * 1557 * * 4966 4716 3768 * * 45 49 5949 5836 0 * 2327 321 6322 1000 3790 D 46 3237 5590 3357 4749 5103 3685 4162 6099 3093 4855 4879 6355 5795 4611 3676 5446 2693 4369 * * 46 142 5310 3864 1831 476 1786 494 6331 1422 3640 K 47 4496 1160 3582 5911 * 6317 3783 5171 3350 4828 6633 4462 4716 * 5277 4557 * * * * 47 181 6116 3276 1585 585 2839 217 6288 1000 3970 P 48 6414 5460 6136 5032 6393 4139 3194 5758 2960 5354 * * 1348 6326 6173 3714 4533 * * 4928 48 89 6852 4290 2000 415 2876 211 6151 1000 4531 K 49 4587 * 3439 5217 * 2831 4586 4677 2579 4594 6110 3465 2872 5702 5259 4411 * 3731 * * 49 164 6094 3432 1000 1000 1901 450 6168 1000 4501 H 50 4458 2703 6288 4759 6081 3874 2390 4857 4283 6158 6350 3158 3617 5908 6085 4770 3795 4982 * * 50 34 5403 * 1389 694 2691 243 6188 1662 4467 P 51 5016 * 5272 * 4844 2146 6233 3948 4766 * * 5319 1403 4998 5470 4531 6150 5642 6188 5685 51 200 3784 4136 1107 900 1000 1000 6220 2920 4306 S 52 3926 3666 5900 * * 3392 2324 4939 * 4742 * * 1964 5142 * 5047 3532 3786 * * 52 190 4754 3536 1592 581 1305 748 6247 1704 4012 H 53 3276 * * 6204 4063 1923 2607 4898 4853 6726 6215 4028 4935 4771 * 3641 5509 4662 4954 * 53 85 4816 5507 2817 221 674 1422 6247 1664 4180 G 54 4522 * 6546 5727 6195 2118 6311 3725 4635 5074 * 7010 1978 4556 * 3783 5275 3322 * 5500 54 49 6299 5602 0 * 2070 393 6255 1085 3305 R 55 3108 6306 4022 4713 4252 2886 6073 6989 4647 5649 * 3130 3968 3895 4467 5732 3179 3913 6043 * 55 20 * 6207 * * 480 1821 6250 0 3383 A 56 3188 * * 5971 3659 * 4784 3361 4387 3937 6954 5353 3569 4860 3338 4231 3831 2660 * 5909 56 37 6479 6161 1585 585 0 * 6226 1000 2156 I 57 4570 * * * 5727 * * 831 5352 2909 4442 * * * * 5236 5193 3066 * * 57 13 6752 * 2322 322 * 0 6298 1000 1000 A 58 1410 * * 7053 * 4959 * 2621 4432 * 6724 * 5055 4782 * 3648 5367 2357 * * 58 35 5366 * 1452 656 * 0 6298 1390 1000 A 59 4707 * 5081 1943 6548 4400 * 5268 4146 * * 6484 4827 2555 6457 2773 2852 6775 * 6668 59 39 6949 5757 1585 585 0 * 6298 1000 1000 G 60 4093 6649 * * 6387 466 4992 * 6425 6075 * * * 6459 5269 4970 5186 4913 * 6984 60 8 7435 * 0 * 1023 977 6311 1000 1564 S 61 4917 4942 2813 4652 7122 7058 5334 6507 * * * 4491 6764 6026 5339 899 4693 5910 * 5917 61 0 * * * * * 0 6317 0 1000 G 62 2827 * 4341 3953 5156 3622 5025 * 5100 4611 6140 * 2614 6822 4026 2489 3382 * 6234 * 62 61 * 4597 * * * 0 6317 0 1000 T 63 4932 * 6253 * * 4485 6721 5208 3713 5479 * 2686 * 4653 5398 2325 1709 6554 6078 5344 63 34 * 5411 * * 1087 918 6301 0 1961 V 64 4238 5736 * * 4144 * * 3956 * 7355 3240 6138 * * 5547 6560 4819 823 * 4372 64 0 * * * * 2056 397 6328 0 2259 M 65 * * * 6660 1808 * * 3363 5384 2255 5934 4456 * 6101 5620 4237 3056 5594 * 3588 65 20 6176 * 0 * 1609 573 6298 1000 2027 I 66 4887 5847 3802 5288 4245 * 5609 1004 * 6910 6026 * * * * 6434 6275 2173 6690 * 66 0 * * * * 952 1050 6300 0 1618 D 67 5801 * 2972 2785 5340 3076 5231 * 5352 6413 * 1163 * 4989 * * 6050 * * 6593 67 11 6984 * 0 * 0 * 6315 1000 1000 G 68 * * 4519 * * 393 7011 * 6142 5583 * 3687 * * 6165 4440 6134 * * * 68 0 * * * * * * 6320 0 0 K 69 4864 6402 * 5466 6527 * * 4042 1497 2995 5295 6259 * 4169 2846 5334 4730 4052 * 5385 69 0 * * * * * * 6320 0 0 P 70 3181 * 6835 5634 * 3891 * 6259 5369 6765 6925 4495 726 4905 5052 5838 * 6826 * * 70 0 * * * * * * 6320 0 0 A 71 1051 * * * * * * 2462 * 4587 5104 6356 * * * * * 2058 * 6286 71 0 * * * * * * 6320 0 0 A 72 446 5813 * * * 5633 6104 4842 * 5773 * * * * * 5483 4668 3344 * * 72 0 * * * * * * 6320 0 0 R 73 5918 4803 * * 3913 6035 7131 * 5927 3290 6681 * * 4710 895 * 4581 4111 * 4188 73 0 * * * * * * 6320 0 0 V 74 4033 6402 3693 3643 5927 * 3247 2776 3988 3311 3966 * * 4361 * 6623 4012 2704 * * 74 0 * * * * * * 6320 0 0 G 75 5074 * 4433 6448 * 524 * * 4886 4378 * 4564 * 5654 * 4888 4669 * * * 75 0 * * * * * * 6320 0 0 D 76 6440 4269 626 * * 6156 2894 * * * 4947 * * * * 3849 5913 * * 5531 76 35 5377 * 1318 740 * * 6308 1708 0 A 77 3253 * 6517 5135 7406 5312 5686 4992 2034 3276 4834 * 4106 4652 2951 3956 4324 4328 * * 77 0 * * * * * * 6290 0 0 V 78 4515 3232 * * * 6336 * 3703 * 3048 4393 5957 6065 * * 4877 1360 2863 * * 78 0 * * * * * * 6263 0 0 D 79 1931 * 4606 3560 * 4175 7209 5396 * 5726 6110 6315 * 4594 * 2427 2216 4733 * * 79 34 5441 * 0 * * * 6263 1419 0 C 80 6074 283 6047 6132 * 5916 3400 * 6936 6140 * * * * * * * * * * 80 71 4382 * 1595 580 * * 6263 2157 0 G 81 6084 * 4391 5034 * 237 * * * * * 6106 * * * 4499 * * * * 81 81 4507 6565 0 * * * 6257 2153 0 G 82 964 3444 4562 5974 * 2539 * * 4902 * * 4535 * * * 3773 6023 * * * 82 156 3286 * 664 1439 * 0 6162 3275 1000 V 83 4756 * * 6085 * * 5568 2493 3338 5089 * 6944 * 5153 3856 5547 2148 1976 * 6086 83 20 6176 * 0 * 0 * 6180 1000 1000 L 84 3963 * * * 6136 * * 1671 * 1875 5700 6070 * * * * 5975 1811 * * 84 307 2384 * 513 1742 * * 6107 3959 0 Q 85 3893 * * 4279 * 6209 * 2171 5842 4144 5907 6957 * 3081 * 2728 2867 2968 * 6269 85 143 3402 * 0 * * * 6107 3048 0 G 86 2692 * * * * 917 * * 5721 * * * 3971 * 6156 2489 4611 * * * 86 60 4619 * 886 1123 * * 6006 1635 0 A 87 3872 4658 * 4556 * * * 5892 * 5072 * 6057 * 4203 5954 508 * 6133 * * 87 43 5075 * 0 * * * 5991 1394 0 S 88 4889 * 3941 6087 5728 3569 5673 * 5082 * * 6568 1329 3134 4873 3403 3591 * * * 88 27 5748 * 1585 585 * * 5910 1000 0 S 89 * * 2750 * * 5776 * * 5313 * * 1434 * * 5719 2971 1779 * * * 89 0 * * * * * * 5797 0 0 V 90 * * * * * 5465 4495 5595 * 3162 * * * * * * 3778 459 * * 90 0 * * * * * * 5703 0 0 N 91 * * * 4635 1329 4493 * 4081 * 3030 5600 5191 * 4939 * 3940 3719 3951 5309 5366 91 0 * * * * * * 5459 0 0 I 92 5023 4661 * * 4855 * * 856 * 4457 * * * * * * 5321 1877 * * 92 0 * * * * * * 5406 0 0 G 93 * * * * * 0 * * * * * * * * * * * * * * 93 0 * * 0 * * * 4897 0 0 //