HHsearch 1.5 NAME c4jf3A_ FAM FILE c4jf3A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4jf3A_.a3m DATE Sat Oct 26 08:26:16 2013 LENG 90 match states, 90 columns in multiple alignment FILT 69 out of 73 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.1 EVD 0.4207 -0.2228 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTSHHHHHTSCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC >sa_dssp EEEDEECDDEBDDCCDEADDDDDEBDEDCEECEDDDEECDDDDEECEEDEBCBEDEEEECEEDEEEBDECDEEBDEDBCDADDCDDECEE >ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCC >ss_conf 915899999999999999999999999999999999988764269886488003347531153078887589999999999999998519 >Consensus xxxxxLsxxxxxdxxxxxxslxxlxxxxtslxxvvlQNRxaLDlLxxxxGGxCxxlxexCCfyixxsgxvxxxixxlxexlxxxkxexxx >c4jf3A_ TQYTKLSHQLISDVQAISSTIQDLQDQVDSLAEVVLQNRRGLDLLTAEQGGICLALQEKCSFYANKSGIVRDKIKNLQDDLERRRRQLID >UniRef50_P97406(462-547:596) Proviral envelope protein n=5 Tax=Mus musculus RepID=P97406_MOUSE E=2e-24 s/c=1.31 id=24% cov=97% --YKVLSSAIDADLMELGKSLSKSKTSLTSLREATLRNQREQDFQSLQQDGLCKPLEKRCCTFVDNLKHARELLAKVRKRLEDRKREM-- >UniRef50_UPI00016E021E(368-448:518) UPI00016E021E related cluster n=1 Tax=Takifugu rubripes RepID=UPI00016E021E E=1e-15 s/c=1.04 id=21% cov=81% ------------------DAVAGLSEQVAATSLRTVQNRKALDMLLAEKGGVYAMFGDQCCTFIPNNTVPDGSVTWALEELRTLSDEMKE >UniRef50_P60509(353-411:514) Transmembrane protein domain n=1 Tax=Homo sapiens RepID=ERB1_HUMAN E=7e-12 s/c=1.21 id=36% cov=52% ------------------QSISLMNAEVYYMHEDILQNRMALDILTAAEGGTCALIKTECCVYI-------------------------- >UniRef50_Q14264(518-593:604) Transmembrane protein n=5 Tax=Hominoidea RepID=ENR1_HUMAN E=5e-11 s/c=0.91 id=23% cov=72% ---------------ETAGALNLLAQQATKMRNVIYQNRLALDYLLAQEEGVCGKFNlTNCCLELDDEGkVIKEITAKIQK----------- >UniRef50_UPI000155602A(183-262:279) PREDICTED: similar to female expressed transcript 1 n=1 Tax=Ornithorhynchus anatinus RepID=UPI000155602A E=1e-17 s/c=1.14 id=34% cov=81% -----LSAELHLSANSTGDAITALQSELSSPSRVALRNRMALDLLLANQGGVCVVLNQSCCFYRDESSRIETDVQKI------------- >UniRef50_Q6UY66(553-633:681) GP2 n=27 Tax=Lake Victoria marburgvirus RepID=VGP_MABVO E=4e-12 s/c=0.89 id=19% cov=74% -----------------AKSLELLLRVTTEERTFSLINRHAIDFLLTRWGGTCKVLGPDCCIGIEDLSRnISEQIDQIKKDEQK------- >UniRef50_UPI000194BBE5(1965-2051:2124) PREDICTED: similar to Gag-Pro-Pol-Env protein n=7 Tax=Taeniopygia guttata RepID=UPI000194BBE5 E=6e-17 s/c=1.02 id=21% cov=97% -ELSHLECWINKNANATSAALSDLLADEQTTRHATLQNRAAIDFLLLAHGHSCEDFDGLCCFNLsSRSTSIQAHIKQIREQVKDLKTE--- >UniRef50_Q9H9K5(390-470:563) Uncharacterized protein LP9056 n=1 Tax=Homo sapiens RepID=L9056_HUMAN E=3e-14 s/c=0.98 id=23% cov=90% -----ISKAMEQEFSATKQTLEAHQSKVSSLASASRKDH-VLDIPTTQRQTACGTVGKQCCLYINYSEEIKSNIQRLHEASENLKN---- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * T 1 * * * * * * * * * * * * * * * * 0 * * * 1 0 * * * * * * 1814 0 0 Q 2 * * * 1765 * * * * * * * * * 503 * * * * * * 2 0 * * * * * * 2591 0 0 Y 3 * * * 4744 2321 * 3388 * * 2528 * * * * * * * * * 1018 3 92 4015 * 0 * * * 3095 1061 0 T 4 5971 * * 6006 * * 4405 * 3496 * * 3558 * 2377 3014 2774 2384 * * 3416 4 0 * * * * * * 3573 0 0 K 5 * * 4043 6054 * 5675 2643 4769 3013 * * 3454 * 2624 * 2343 4019 3799 * * 5 0 * * * * * * 3591 0 0 L 6 * * * * 5173 * * 3629 * 166 * * * * * * * * * * 6 0 * * * * * * 3825 0 0 S 7 * * * 3695 * 4655 3072 4008 6128 * * * * 3679 3742 966 * * * 5436 7 0 * * * * * * 3815 0 0 H 8 2566 3695 5986 * * * 3248 3778 2991 5413 4262 4944 * 3389 4887 3212 3492 * * * 8 21 6128 * 1585 585 * * 3815 1000 0 Q 9 1251 * 3967 2645 * * 5319 * 5521 * * * * 2774 * * 4804 4214 3770 * 9 0 * * * * * * 3871 0 0 L 10 4685 * * * 3905 * * 2086 * 1869 2702 * * * * * * 2112 * * 10 0 * * * * * * 3871 0 0 I 11 4395 * 1453 2942 * * 4195 4600 5265 * * 2645 * 4416 5448 3869 4747 * * * 11 0 * * * * * * 3871 0 0 S 12 3262 * 4687 2633 * 5979 * 4293 3770 3789 5521 3628 * 2540 5496 3982 3998 4383 * 6302 12 0 * * * * * * 3871 0 0 D 13 3850 * 783 3712 * * * 4911 * 4243 * 3007 * * * 3990 * * * * 13 0 * * * * * * 3871 0 0 V 14 3016 * * * 3361 * * 2404 * 1430 3710 * * 4247 * 5076 * 4052 * * 14 0 * * * * * * 3954 0 0 Q 15 3658 * 3393 2766 * * * * 4621 * 4399 2794 * 2143 3568 3361 4708 * * * 15 0 * * * * * * 3954 0 0 A 16 1840 6291 4755 2128 * * 3982 5646 5363 5186 6295 5483 * * 2568 3936 5548 * * 5916 16 0 * * * * * * 4072 0 0 I 17 * * * * 5383 * * 2587 * 1800 3831 6291 * * * 3701 1554 5522 * * 17 0 * * * * * * 4072 0 0 S 18 2583 * * 1953 * 3148 * 4624 4079 * * * * 3176 5731 2836 3431 * * * 18 0 * * * * * * 4093 0 0 S 19 3789 * 2373 3772 * 4934 5814 * 2409 * * * * 2378 4117 3599 3473 * * * 19 0 * * * * * * 4180 0 0 T 20 1299 * * * * 4454 * * * * * * * * * 1229 3044 * * * 20 0 * * * * * * 4139 0 0 I 21 * * * * 5125 * * 1552 * 968 * * * * * * 6636 3197 * * 21 0 * * * * * * 4150 0 0 Q 22 4427 * 3445 2666 * 4139 * 6277 5932 6313 * 3552 5190 3772 6286 1914 3189 4971 * * 22 0 * * * * * * 4150 0 0 D 23 2162 * 3012 * 6886 3441 6864 5853 3411 2985 * 4937 * 4542 4536 3766 4175 4813 * 5454 23 0 * * * * * * 4150 0 0 L 24 * * * * 4968 * 4202 3793 * 588 4841 5492 * * * 4815 4749 4421 * * 24 0 * * * * * * 4150 0 0 Q 25 3495 * * 2631 * * 3247 * 2876 2731 * 4698 * 1967 * 4169 7014 * * * 25 0 * * * * * * 4150 0 0 D 26 3626 * 3013 2371 * 5125 * * 2634 * * * * 4608 2647 3404 3650 * * 4749 26 0 * * * * * * 4150 0 0 Q 27 4968 * 3500 3133 7073 * * * 4202 * * 4073 * 1604 * 1809 * 5048 * * 27 0 * * * * * * 4150 0 0 V 28 5428 * * 3776 5241 * 4912 3241 * 1538 5854 * * 6074 5470 * 4029 1847 * * 28 0 * * * * * * 4221 0 0 D 29 3646 * 3477 4218 * 5731 * 7282 6557 4098 * 6762 * 5650 * 1999 1448 6016 * 5569 29 0 * * * * * * 4221 0 0 S 30 3125 * * 4029 * * * 4769 5428 * * 4777 5731 4369 5512 880 4765 * * 4093 30 0 * * * * * * 4221 0 0 L 31 * * * 5070 5909 * * 4069 * 856 3683 * 5620 * * * 2668 3538 * * 31 0 * * * * * * 4221 0 0 A 32 1834 * * * * * 5576 * * * 4767 * * * 1841 1467 * * * 5583 32 0 * * * * * * 4243 0 0 E 33 3884 * * 1531 * 4380 4545 * 4041 3298 6376 4297 * 3334 5504 3501 4047 * * * 33 0 * * * * * * 4243 0 0 V 34 2279 * 5567 * 4439 * * 6509 * * 3332 * * * 5511 * * 884 * 4247 34 0 * * * * * * 4203 0 0 V 35 2317 * * * * * * 3635 * * * * * * * 3141 2795 1116 * * 35 0 * * * * * * 4203 0 0 L 36 3744 * * * 5138 * * 4480 * 699 4249 * * * 4245 5577 * 4745 5727 4223 36 0 * * * * * * 4203 0 0 Q 37 * * 6293 5727 * * * 5088 4245 5001 * * * 343 4459 * * * 5577 * 37 0 * * * * * * 4203 0 0 N 38 * * 4245 * * * * * * * * 78 * * * * * * * * 38 0 * * * * * * 4203 0 0 R 39 * 5891 * * * * 3471 * * * * * * 3703 409 * * * 3982 * 39 78 * 4245 * * * * 4203 0 0 R 40 3352 * * * * * 4947 4429 4167 3496 2753 * * 4259 1157 5833 * 6340 * * 40 0 * * * * 0 * 4042 0 1000 G 41 835 5891 * 4915 * 1785 * * * * * * * * 5566 5292 * 4245 * * 41 0 * * * * * * 4203 0 0 L 42 * * * * * * * 2598 * 371 * * * 4915 * * * 5138 * * 42 0 * * * * * * 4203 0 0 D 43 * * 109 6842 * 4705 * * * * * 5274 * * * * * * * * 43 0 * * * * * * 4258 0 0 L 44 * * * * 2451 * * 3288 * 1158 3058 * * * * * * 5226 4769 3587 44 0 * * * * * * 4258 0 0 L 45 * * * * * * * 4076 * 320 4635 * 4233 4892 * * * 6322 * * 45 0 * * * * * * 4260 0 0 T 46 * * * * 2307 * * * * 1317 5900 * * * * 4462 1913 4959 * 4767 46 33 * 5447 * * * * 4260 0 0 A 47 1250 * * * * 5571 * 4763 * 1567 6088 * * 4957 * 5709 3581 6257 5534 * 47 0 * * * * * 0 4242 0 1000 E 48 2746 * 6565 1754 * 5886 5260 * 3138 4976 * 5493 5844 2478 3225 5870 6345 * * * 48 0 * * * * * 0 4242 0 1000 Q 49 * * * 1982 * * 3214 4502 2628 4763 * * * 2052 3433 * * * 4001 * 49 0 * * * * * 0 4242 0 1000 G 50 * * 4854 5494 * 240 * * * * * 5865 * 4230 5260 * * * * * 50 54 4763 * 1000 1000 * 0 4242 1000 1000 G 51 5571 * * * * 388 3214 * * * * * * * 5888 4763 4230 * * * 51 0 * * * * * 0 4242 0 1000 I 52 4230 * * 6096 * 4370 * 4698 * 1637 * * * * 5865 5176 2240 1904 * * 52 0 * * * * * 0 4242 0 1000 C 53 * 54 * * * * * * * * * * * * * 6088 * * * 5506 53 0 * * * * * 0 4242 0 1000 L 54 2179 * * 4427 * 3205 * 4293 2759 3045 5653 * 4763 * 4957 4048 4753 3240 * 6379 54 0 * * * * * 0 4242 0 1000 A 55 2077 * 4220 4209 3726 4503 * 4069 4180 5180 2676 * 4854 * * * 3472 3308 * 6484 55 0 * * * * 0 * 4243 0 1000 L 56 * * * * 2130 * 5282 2354 * 1230 4635 * * * * * * 3577 * * 56 0 * * * * * * 4261 0 0 Q 57 4461 * 4241 4068 * 1660 6228 * 2411 5724 * 2521 * 3554 7056 * * 4703 * * 57 58 4654 * 0 * * * 4470 1232 0 E 58 * * 3457 1166 * 3108 * * 3326 * 5376 6038 3928 4672 * 6119 3490 * * * 58 27 5773 * 0 * * * 4438 1000 0 K 59 * * 4607 1587 * * * * 5042 3708 4220 4009 4702 2599 4596 3109 5656 * * 5456 59 0 * * * * * * 4438 0 0 C 60 * 88 * * * * * * * * * * * * 5586 * * * * 4701 60 0 * * * * * * 4438 0 0 S 61 * 76 * * 5596 * * * * * * * * * * 5026 * * * * 61 0 * * * * * * 4438 0 0 F 62 5977 * * * 1010 * * 3519 * 3435 * * * * * 6554 2325 4310 * 4405 62 21 6140 * 0 * * * 4481 1000 0 Y 63 * * 4871 3764 2673 4915 * 5645 * 3465 * 3559 * 5758 * * * * 6384 1070 63 56 4726 * 0 * * * 4481 1000 0 A 64 2939 * * * * * * 1184 * 2780 5614 5378 4892 * 5415 4320 5617 3161 * * 64 161 3241 * 0 * * * 4481 2009 0 N 65 * * 1397 4911 * * * 5265 * * * 1936 2939 4833 * 2896 * * * * 65 0 * * * * * * 4594 0 0 K 66 * * 3149 2880 * * 2261 * 4163 * * 2423 * 3529 4170 3993 * * 4828 4050 66 0 * * * * * * 4594 0 0 S 67 5490 * 3411 5238 * * * * 4763 3461 6009 2677 * 5680 * 1508 2598 * * 5538 67 0 * * * * * * 4594 0 0 G 68 * * 5159 2772 * 1049 * * 3838 5879 * * * * * 3417 2629 * * * 68 89 4061 * 0 * * * 4594 1866 0 I 69 2639 * 5490 4309 * * 4042 2468 6232 3319 6100 4828 * 4150 3727 4322 5122 2723 * * 69 80 4211 * 0 * * * 4594 1623 0 V 70 3897 * 5145 * * * * 1413 * * * * 3620 * * 5863 * 1215 * * 70 39 * 5240 * * * * 4582 0 0 R 71 * * 3488 3294 * 5133 5524 5534 2687 * * * * 2843 1799 4807 3488 5543 * 6810 71 0 * * * * * 0 4421 0 1000 D 72 4711 * 2199 2092 * 3189 3964 5437 4340 5469 * 4805 * 4241 * 3865 4133 5241 * * 72 0 * * * * 0 * 4346 0 1000 K 73 4820 * 4090 4797 * * 5620 5097 3350 3508 * 2575 * 4781 6436 1488 4012 * * * 73 17 6409 * 1585 585 * * 4392 1000 0 I 74 4826 * * * 4892 * * 1192 * 2497 3261 * * * * * 5097 2451 * * 74 0 * * * * * * 4392 0 0 K 75 2618 * 2926 5461 * 5385 * * 3031 5176 * 4789 * 1857 4311 4734 3353 6530 * * 75 0 * * * * * * 4380 0 0 N 76 * * * 2956 * 5461 * * 1557 4872 4249 5431 * 2206 3306 5112 5492 * 5073 * 76 0 * * * * * * 4380 0 0 L 77 3064 * * 4367 4249 * * 1973 * 1448 3581 * * * 6853 * * 3920 * * 77 0 * * * * * * 4380 0 0 Q 78 * * * 6455 * * 4067 * 1745 2880 * 5405 * 3430 1635 * * * 4799 5622 78 0 * * * * * * 4461 0 0 D 79 6189 * 2726 1384 * 4858 4663 * 2038 * * * 5036 5343 4892 5421 5478 * * * 79 0 * * * * * * 4427 0 0 D 80 3866 * 2631 3432 * 2991 4657 * 6939 3645 4770 4035 4995 3999 2651 3775 * * * * 80 0 * * * * * * 4363 0 0 L 81 5959 * * 4072 6466 * * 3190 * 832 * * * 4098 * 3559 * 3344 * * 81 0 * * * * * * 4269 0 0 E 82 5586 * 3380 2120 * 4681 5414 * 3537 6002 * 3055 * 2495 3647 * 3166 * * * 82 0 * * * * * * 4265 0 0 R 83 4798 * 3048 4248 * * * 6634 1548 5586 * 3824 * 3050 3634 4012 3578 * * * 83 0 * * * * * * 4265 0 0 R 84 * * * * * * 3037 3563 5643 1617 * * * * 1316 * * 4448 * * 84 0 * * * * * * 4080 0 0 R 85 3473 * * 5264 * * * * 1201 * * * * 2193 3237 3011 * * * * 85 18 * 6299 * * * * 3928 0 0 R 86 * * 4360 5024 * * * * 1959 6038 * 2263 * 2826 2538 * 3436 * * 4871 86 0 * * * * 0 * 3928 0 1000 Q 87 2330 * * 618 * * * * 5314 * * * * 3505 * * * 4786 * * 87 0 * * * * * * 3632 0 0 L 88 4118 * * * * * * * * 1125 1451 * * 4345 * * * * 3859 * 88 0 * * * * * * 3089 0 0 I 89 2581 * * * 3575 * * 851 3035 * * * * * * * * * * 3788 89 0 * * * * * * 2719 0 0 D 90 * * 955 1047 * * * * * * * * * * * * * * * * 90 0 * * 0 * * * 2604 0 0 //