HHsearch 1.5 NAME c4jdeA_ FAM FILE c4jdeA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4jdeA_.a3m DATE Sat Nov 9 08:22:19 2013 LENG 144 match states, 144 columns in multiple alignment FILT 4 out of 8 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.8 EVD 0.4376 0.3955 SEQ >ss_dssp CCCEEEEEEEEEEECSSSEEEEEEEEEETTSCCEECCCEEECTTCEEEEEEEEEEEESTTCCCCEEEEEEEEEEEEECCBCTTSCBCSCCEEEEEEEEEE TTTSCEECCCCGGGTTSEEEEEECSSEEEEEETTEEEEEEEEEC >sa_dssp EEDCECCADABABACBEBCBCACACADBDEDEDCEBEECEBEDECECDBBEDABACCCEECEBCACACACACCBDDDDDEDEEEEDDEEDCDDEDBDCBA CEEDDCDBDACDEADDEDACADADDEDACACBDCDECDBDADED >ss_pred CCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEEEECCCCCEEECCEEEEECCCCCC CCCCCEEEEEEEECCCCEEEEEEEEEEEEEECCCCCEEEEEEEC >ss_conf 9651257898974277868999998742286655147086268546878774310244200133432661089999850576310230226861311005 83110133577624683455788730357874588423334419 >Consensus sqlTrrxAkvxieNxtgsxFkxQVlHqYTgxxxxxSxxvxfxPxexxxifxxvxYnTGffTTGxDNWkVxGxxxqxxTexdxkxxxixgKxxixgxxxxs xxxxWKkHtLraeDxxxxTxIkVfxtEvqFiSpSGxStTtFxxx >c4jdeA_ SQLTRRTAKVSIDNQTGSHFKFQVTHKYTGWDADKSDVVMFQPDEVKEIFKSVAYNTGFLTTGVDNWLVDGTMVQERTEVDNKGHQIGKKSYIEHAKFIS DSRSWKQHMLTAEDDGKTTTIRVFPTEIHFISPSGESTTTFTKY >UniRef50_O44604(7-152:154) Putative uncharacterized protein n=1 Tax=Caenorhabditis elegans RepID=O44604_CAEEL E=2e-20 s/c=0.68 id=42% cov=100% SGVTEQWAKVDIENKSDHVFKFQVLHQYTGNALEASKWVKLEPNQSAQILEKVHYNTGPFTTGTDNWKVHG-IKQIETNLDDKNGVVDGKVRILGEAWRS ghpDGADWKKHTLRVEDHAQTTVIKVLEKEVQFVSKSGTSTTDFYRH >UniRef50_Q9GQ62(13-155:172) 5C820 n=3 Tax=Caenorhabditis elegans RepID=Q9GQ62_CAEEL E=1e-54 s/c=1.49 id=49% cov=97% -QLTRRWAKIVVENRTGSHFKIQVLHEYTGEQTNDSGYIDFKPDDRITVFEKIYYNTGFFTTGVDNWKVHGTkLIQVETE-GTIARNIFGKFFVDGLPYS TGHGAfakWKKHTLRADDDGQETVIKVFQTEVQFISPSGRSVTTF--- >UniRef50_Q4R163(3-144:157) Putative uncharacterized protein n=6 Tax=Caenorhabditis RepID=Q4R163_CAEEL E=3e-52 s/c=1.44 id=52% cov=96% ---TRRTASVDLENCTGSYFRLQVLHQYTNEGTDDSGLLDFKPGEKKRVFDSVQYYTGFFTTGCDNWKVDGIRLHEVT-TDSKTVQamIGGKAFVEGLPY KSGhgfGAQWKKHTLRAEDRDRATLIKVFQTEVQFISPSGVSTTTF--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 1491 0 0 Q 2 * * * * * 1557 * * * * * * * 599 * * * * * * 2 0 * * * * * * 1734 0 0 L 3 * * * * * * * * * 599 * * * * * * * 1557 * * 3 0 * * * * * * 1734 0 0 T 4 * * * * * * * * * * * * * * * * 0 * * * 4 0 * * * * * * 1864 0 0 R 5 * * * 1889 * * * * * * * * * * 454 * * * * * 5 0 * * * * * * 1864 0 0 R 6 * * * * * * * * * * * * * 1889 454 * * * * * 6 0 * * * * * * 1864 0 0 T 7 * * * * * * * * * * * * * * * * 1025 * 976 * 7 0 * * * * * * 1864 0 0 A 8 0 * * * * * * * * * * * * * * * * * * * 8 0 * * * * * * 1864 0 0 K 9 * * * * * * * * 384 * * * * * * 2097 * * * * 9 0 * * * * * * 1864 0 0 V 10 * * * * * * * 2068 * * * * * * * * * 393 * * 10 0 * * * * * * 1864 0 0 S 11 * * 990 * * * * * * * * * * * * 1955 * 2068 * * 11 0 * * * * * * 1864 0 0 I 12 * * * * * * * 922 * 2097 * * * * * * * 2068 * * 12 0 * * * * * * 1864 0 0 D 13 * * 1955 430 * * * * * * * * * * * * * * * * 13 0 * * * * * * 1864 0 0 N 14 * * * * * * * * * * * 0 * * * * * * * * 14 0 * * * * * * 1864 0 0 Q 15 * 2097 * * * * * * 1889 * * * * 1955 2068 * * * * * 15 0 * * * * * * 1864 0 0 T 16 * * * * * * * * * * * * * * * 1889 454 * * * 16 0 * * * * * * 1864 0 0 G 17 * * 1889 * * 454 * * * * * * * * * * * * * * 17 0 * * * * * * 1864 0 0 S 18 * * * * * * 1889 * * * * * * * * 454 * * * * 18 0 * * * * * * 1864 0 0 H 19 * * * * * * 1010 * * * * * * * * * * 1889 * 2097 19 0 * * * * * * 1864 0 0 F 20 * * * * 0 * * * * * * * * * * * * * * * 20 0 * * * * * * 1864 0 0 K 21 * * * * * * * * 384 * * * * * 2097 * * * * * 21 0 * * * * * * 1864 0 0 F 22 * * * * 922 * * 2068 * 2097 * * * * * * * * * * 22 0 * * * * * * 1864 0 0 Q 23 * * * * * * * * * * * * * 0 * * * * * * 23 0 * * * * * * 1864 0 0 V 24 * * * * * * * * * * * * * * * * * 0 * * 24 0 * * * * * * 1864 0 0 T 25 * * * * * * * * * 430 * * * * * * 1955 * * * 25 0 * * * * * * 1864 0 0 H 26 * * * * * * 0 * * * * * * * * * * * * * 26 0 * * * * * * 1864 0 0 K 27 * * * 2068 * * * * 1955 * * * * 990 * * * * * * 27 0 * * * * * * 1864 0 0 Y 28 * * * * * * * * * * * * * * * * * * * 0 28 0 * * * * * * 1864 0 0 T 29 * * * * * * * * * * * * * * * * 0 * * * 29 0 * * * * * * 1864 0 0 G 30 * * * * * 384 * * * * * 2097 * * * * * * * * 30 0 * * * * * * 1864 0 0 W 31 * * * 1082 * * * * * * * 1889 * * * * * * 1955 * 31 0 * * * * * * 1864 0 0 D 32 1889 * 1955 * * 2097 * * * * * * * 2068 * * * * * * 32 0 * * * * * * 1864 0 0 A 33 1955 * * * * * * * * 1889 * * * * * * 1082 * * * 33 0 * * * * * * 1864 0 0 D 34 * * 1025 1889 * * * * * * * 2068 * * * * * * * * 34 0 * * * * * * 1864 0 0 K 35 1889 * 1082 * * * * * 1955 * * * * * * * * * * * 35 0 * * * * * * 1864 0 0 S 36 * * * * * * * * * * * * * * * 0 * * * * 36 0 * * * * * * 1864 0 0 D 37 * * 1955 * * 1082 * * 1889 * * * * * * * * * * * 37 0 * * * * * * 1864 0 0 V 38 * * * * * * * * * 2097 * * * * * * * 1955 1889 2068 38 0 * * * * * * 1864 0 0 V 39 * * * * * * * 2068 * 2097 * * * * * * * 922 * * 39 0 * * * * * * 1864 0 0 M 40 * * 1082 * * * * * 1889 * 1955 * * * * * * * * * 40 0 * * * * * * 1864 0 0 F 41 * * * * 454 * * * * 1889 * * * * * * * * * * 41 0 * * * * * * 1864 0 0 Q 42 * * * 1889 * * * * 1082 * * * * 1955 * * * * * * 42 0 * * * * * * 1864 0 0 P 43 * * * * * * * * * * * * 0 * * * * * * * 43 0 * * * * * * 1864 0 0 D 44 * * 1010 * * 2097 * * * * * 1889 * * * * * * * * 44 0 * * * * * * 1864 0 0 E 45 * * 2068 1025 * * * * * * * * * 1889 * * * * * * 45 0 * * * * * * 1864 0 0 V 46 * * * * * * * * 2097 * * * * * 2068 1889 * 1955 * * 46 0 * * * * * * 1864 0 0 K 47 1889 * * * * * * 2068 1025 * * * * * * * * * * * 47 0 * * * * * * 1864 0 0 E 48 * * * 1955 * * * * * * * * * 1889 2097 * 2068 * * * 48 0 * * * * * * 1864 0 0 I 49 * * * * * * * 922 * * * * * * * * * 1082 * * 49 0 * * * * * * 1864 0 0 F 50 * * * * 454 * * * * 1889 * * * * * * * * * * 50 0 * * * * * * 1864 0 0 K 51 * * 2097 976 * * * * 1955 * * * * * * * * * * * 51 0 * * * * * * 1864 0 0 S 52 * * * * * * * * 976 * * * * * * 1025 * * * * 52 0 * * * * * * 1864 0 0 V 53 * * * * * * * 2068 * * * * * * * * * 393 * * 53 0 * * * * * * 1864 0 0 A 54 1955 * * * * * 1889 * * * * * * 2097 * * * * * 2068 54 0 * * * * * * 1864 0 0 Y 55 * * * * * * * * * * * * * * * * * * * 0 55 0 * * * * * * 1864 0 0 N 56 * * * * * * * * * * * 384 * * * * * * * 2097 56 0 * * * * * * 1864 0 0 T 57 * * * * * * * * * * * * * * * * 0 * * * 57 0 * * * * * * 1864 0 0 G 58 * * * * * 0 * * * * * * * * * * * * * * 58 0 * * * * * * 1864 0 0 F 59 * * * * 454 * * * * * * * 1889 * * * * * * * 59 0 * * * * * * 1864 0 0 L 60 * * * * 430 * * * * 1955 * * * * * * * * * * 60 0 * * * * * * 1864 0 0 T 61 * * * * * * * * * * * * * * * * 0 * * * 61 0 * * * * * * 1864 0 0 T 62 * * * * * * * * * * * * * * * * 0 * * * 62 0 * * * * * * 1864 0 0 G 63 * * * * * 0 * * * * * * * * * * * * * * 63 0 * * * * * * 1864 0 0 V 64 * 2097 * * * * * * * * * * * * * * 1889 1010 * * 64 0 * * * * * * 1864 0 0 D 65 * * 0 * * * * * * * * * * * * * * * * * 65 0 * * * * * * 1864 0 0 N 66 * * * * * * * * * * * 0 * * * * * * * * 66 0 * * * * * * 1864 0 0 W 67 * * * * * * * * * * * * * * * * * * 0 * 67 0 * * * * * * 1864 0 0 L 68 * * * * * * * * 430 1955 * * * * * * * * * * 68 0 * * * * * * 1864 0 0 V 69 * * * * * * * * * * * * * * * * * 0 * * 69 0 * * * * * * 1864 0 0 D 70 * * 1025 * * * 976 * * * * * * * * * * * * * 70 0 * * * * * * 1864 0 0 G 71 * * * * * 0 * * * * * * * * * * * * * * 71 454 * 1889 * * * * 1864 0 0 T 72 * * * * * * * 1646 * * * * * * * * 555 * * * 72 578 1598 * 0 * 0 * 1600 1000 1000 M 73 * * * * * * * 1889 * 2068 1955 * * * 2097 * * * * * 73 0 * * * * * * 1864 0 0 V 74 * * * * * * * 2068 1889 2097 * * * * * * * 1955 * * 74 0 * * * * * * 1864 0 0 Q 75 * * * * * * 2097 * * * * * * 384 * * * * * * 75 0 * * * * * * 1864 0 0 E 76 * * * 1025 * * * 1889 * * * * * * * * * 2068 * * 76 0 * * * * * * 1864 0 0 R 77 * * * 976 * * * * * * * * * * 1955 * * 2097 * * 77 0 * * * * * * 1864 0 0 T 78 * * * * * * * * * * * * * * * * 0 * * * 78 384 * 2097 * * * * 1864 0 0 E 79 * * * 599 * * * * * * * 1557 * * * * * * * * 79 564 * 1627 * * 0 * 1734 0 1000 V 80 * * * * * * * * * 1534 * * * * * * 1635 1588 * * 80 0 * * * * 0 * 1719 0 1000 D 81 * * 393 * * 2068 * * * * * * * * * * * * * * 81 0 * * * * * * 1864 0 0 N 82 * * 1889 * * * * * * * * 1955 * * * 2097 2068 * * * 82 0 * * * * * * 1864 0 0 K 83 * * * * * * * 2068 393 * * * * * * * * * * * 83 0 * * * * * * 1864 0 0 G 84 2068 * * * * 1955 * * * * * 1889 * * * * 2097 * * * 84 0 * * * * * * 1864 0 0 H 85 * * * * * 1889 1955 * * * * * * * 2068 * * 2097 * * 85 0 * * * * * * 1864 0 0 Q 86 * * * * * * * * * * * 2068 * 1025 * * * 1889 * * 86 384 2097 * 1000 1000 * * 1864 1000 0 I 87 * * * * * * * 454 * * * * * * * * * 1889 * * 87 0 * * * * * * 1864 0 0 G 88 * * 1889 * 2068 1025 * * * * * * * * * * * * * * 88 0 * * * * * * 1864 0 0 K 89 * * * * * 430 * * 1955 * * * * * * * * * * * 89 0 * * * * * * 1864 0 0 K 90 * * * * * * * * 0 * * * * * * * * * * * 90 0 * * * * * * 1864 0 0 S 91 2097 * * * 2068 * * * * * * * * * * 1955 * 1889 * * 91 0 * * * * * * 1864 0 0 Y 92 * * * * 1082 * * * * * * * * * 1889 * * * * 1955 92 0 * * * * * * 1864 0 0 I 93 * * * * * * * 922 * * * * * * * * * 1082 * * 93 0 * * * * * * 1864 0 0 E 94 * * 2068 1025 * * * * * 1889 * * * * * * * * * * 94 0 * * * * * * 1864 0 0 H 95 * * * * * 430 1955 * * * * * * * * * * * * * 95 0 * * * * * * 1864 0 0 A 96 1955 * * 1889 * * * * * 1082 * * * * * * * * * * 96 0 * * * * * * 1864 0 0 K 97 1889 * * * * * * * 1955 * * * 1082 * * * * * * * 97 0 * * * * * * 1864 0 0 F 98 * * * * 1955 * * * * * * * * * * * * * 1889 1082 98 0 * * * * * * 1864 0 0 I 99 * * * * * * * 1955 2097 * * * * * 1889 2068 * * * * 99 0 * * * * * * 1864 0 0 S 100 * * * * * * * * * * * * * * * 393 2068 * * * 100 454 1889 * 1585 585 * * 1864 1000 0 D 101 * * 922 * * 1082 * * * * * * * * * * * * * * 101 384 2097 * 1585 585 * * 1864 1000 0 S 102 * * * * * 990 2068 * * * * * * * * 1955 * * * * 102 0 * * * * * * 1864 0 0 R 103 990 * * * * 2068 * * * * * * * * 1955 * * * * * 103 0 * * * * * * 1864 0 0 S 104 2068 * 1889 * * * * * * * * * * 2097 * 1955 * * * * 104 393 2068 * 1585 585 * * 1864 1000 0 W 105 * * * * * * * * * * * * * * * * * * 0 * 105 0 * * * * * * 1864 0 0 K 106 * * * * * * * * 0 * * * * * * * * * * * 106 0 * * * * * * 1864 0 0 Q 107 * * * * * * * * 430 * * * * 1955 * * * * * * 107 0 * * * * * * 1864 0 0 H 108 * * * * * * 0 * * * * * * * * * * * * * 108 0 * * * * * * 1864 0 0 M 109 * * * * * * * * * * 1955 * * * * * 430 * * * 109 0 * * * * * * 1864 0 0 L 110 * * * * * * * * * 0 * * * * * * * * * * 110 0 * * * * * * 1864 0 0 T 111 * * * * * * * * * * * * * * 430 * 1955 * * * 111 0 * * * * * * 1864 0 0 A 112 454 * * * * * * * * * * * * * * * * 1889 * * 112 0 * * * * * * 1864 0 0 E 113 * * 2068 393 * * * * * * * * * * * * * * * * 113 0 * * * * * * 1864 0 0 D 114 * * 0 * * * * * * * * * * * * * * * * * 114 0 * * * * * * 1864 0 0 D 115 * * 1010 * * * 1889 * * * * * * * 2097 * * * * * 115 0 * * * * * * 1864 0 0 G 116 1889 * 2097 * * 1010 * * * * * * * * * * * * * * 116 0 * * * * * * 1864 0 0 K 117 * * * * * * * * 1955 * * * * 976 2097 * * * * * 117 0 * * * * * * 1864 0 0 T 118 2097 * * 2068 * * * * * * * * * * * * 922 * * * 118 0 * * * * * * 1864 0 0 T 119 * * * * * * * * * * * * * * * * 0 * * * 119 0 * * * * * * 1864 0 0 T 120 * * * * * * * * * 2097 * * * * * * 1955 976 * * 120 0 * * * * * * 1864 0 0 I 121 * * * * * * * 0 * * * * * * * * * * * * 121 0 * * * * * * 1864 0 0 R 122 * * * * * * * * 430 * * * * * 1955 * * * * * 122 0 * * * * * * 1864 0 0 V 123 * * * * * * * * * * * * * * * * * 0 * * 123 0 * * * * * * 1864 0 0 F 124 * * * * 454 * * * * 1889 * * * * * * * * * * 124 0 * * * * * * 1864 0 0 P 125 * * * 1889 * * * * * * * * 1955 1082 * * * * * * 125 0 * * * * * * 1864 0 0 T 126 * * * * * * * * 1889 * * * * * * * 454 * * * 126 0 * * * * * * 1864 0 0 E 127 * * * 0 * * * * * * * * * * * * * * * * 127 0 * * * * * * 1864 0 0 I 128 * * * * * * * 1955 * * * * * * * * * 430 * * 128 0 * * * * * * 1864 0 0 H 129 * * * * * * 1955 * * * * * * 430 * * * * * * 129 0 * * * * * * 1864 0 0 F 130 * * * * 0 * * * * * * * * * * * * * * * 130 0 * * * * * * 1864 0 0 I 131 * * * * * * * 454 * * * * * * * * * 1889 * * 131 0 * * * * * * 1864 0 0 S 132 * * * * * * * * * * * * * * * 0 * * * * 132 0 * * * * * * 1864 0 0 P 133 * * * * * * * * 1889 * * * 454 * * * * * * * 133 0 * * * * * * 1864 0 0 S 134 * * * * * * * * * * * * * * * 0 * * * * 134 0 * * * * * * 1864 0 0 G 135 * * * * * 0 * * * * * * * * * * * * * * 135 0 * * * * * * 1864 0 0 E 136 * * * 1955 * * * * * * * * * * 2068 * 1889 2097 * * 136 0 * * * * * * 1864 0 0 S 137 * * * * * * * * * * * * * * * 0 * * * * 137 0 * * * * * * 1864 0 0 T 138 * * * * * * * * * * * * * * * * 393 2068 * * 138 0 * * * * * * 1864 0 0 T 139 * * * * * * * * * * * * * * * * 0 * * * 139 0 * * * * * * 1864 0 0 T 140 * * 1889 * * * * * * * * * * * * * 454 * * * 140 0 * * * * * * 1864 0 0 F 141 * * * * 0 * * * * * * * * * * * * * * * 141 0 * * * * * * 1864 0 0 T 142 * * * * * * * * * * * * * * * * 990 * * 1010 142 0 * * * * * * 1491 0 0 K 143 * * * * * * * * 990 * * * * * 1010 * * * * * 143 0 * * * * * * 1491 0 0 Y 144 * * * * * * 1010 * * * * * * * * * * * * 990 144 0 * * 0 * * * 1491 0 0 //