HHsearch 1.5 NAME c4itqA_ FAM FILE c4itqA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4itqA_.a3m DATE Sat Mar 30 08:17:23 2013 LENG 90 match states, 90 columns in multiple alignment FILT 17 out of 21 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.7 EVD 0.4469 0.9588 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHTTCHHHHTSBHHHHHHTBTTBCHHHHHHHHHHHTCCTTCBSTTCCHHHHHHHHHHCC >sa_dssp EDEDDEDCECCDDDADCDAEEEECDBCEBBEDACECEDBBEBCBCCAACCCEECDEEEAEEBBEECEBDEDDDAEDBDEECCECBCDCDE >ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHC >ss_conf 967999999999999999870899899999315402475322199999962011366899999981867553013220433999998619 >Consensus AlxkAxxvRxxRaexkxxlkxGxxsxxxvLxxxxxxxxxxxxkVxxlLxalPgxGxvkaxximxxlxIaxsRRvxGLGxxQrxxLxxxfg >c4itqA_ ALEKAAAARRERAEVKNRLKHSGASLHEVIKQGQENDVIGKXKVSALLESLPGVGKVRAKQIXERLGISESRRVRGLGSNQIASLEREFG >UniRef50_B6GDJ3(34-124:125) Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GDJ3_9ACTN E=9e-05 s/c=0.53 id=32% cov=101% SLDKAATVRKERAIIRKDLKIGLMTFEQMLKLADAGcQAAASMRVKQAIGSMPGYGFAKTQQLMRDLHIADGKRVKGLGVRQRAALLEVFG >UniRef50_A4E7B4(18-100:113) Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E7B4_9ACTN E=9e-07 s/c=0.66 id=32% cov=93% AMAKAIHTRRERAAFKAACKAGNIPPETAIEA----PIAARLRVEEFARSFPGIGPVTAQKIVEACHVRDGRRVSSLGYMQGPRLVD--- >UniRef50_D2NT53(19-107:131) Predicted permease n=2 Tax=Rothia mucilaginosa RepID=D2NT53_9MICC E=3e-17 s/c=1.01 id=37% cov=100% AREKAVLARAHRQEIKRALSDRELSVRQVLDMVDSDPALAKMPVGQMLRALPGIGAVRAERIIEELHIAPTRRLGGLGVHQRRKMVEYF- >UniRef50_C8WNI9(20-109:109) Putative uncharacterized protein n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WNI9_EGGLE E=3e-12 s/c=0.81 id=37% cov=101% ALKRAAEMRAARAEYLARVKSGEVTIATALAEGKDNPVVGRIKAKRLLMALPGIGSAKTQSAMTAIGIAESRRVAGIGQRQAEKLIELFG >UniRef50_D1VD66(53-129:310) Transcriptional regulator, MarR family n=1 Tax=Frankia sp. EuI1c RepID=D1VD66_9ACTO E=7e-11 s/c=0.89 id=36% cov=87% ----------QASEILNQLRQGTLTLARLLDQA-DDAVIGRLRVSTVLEALPSRVAAQAQEVLDSLGISETRRLRSLGTGQRAALRNL-- >UniRef50_UPI0001C31207(16-102:124) hypothetical protein Cwoe_1634 n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31207 E=2e-10 s/c=0.77 id=26% cov=93% ALERANRVRLARAELKRRIADGEVSAAEVLLSSPWE--ASSMAIGDVLMSQRRWGSTRCRKFLAMFRLAETKSVGSLTERQRHAL----- >UniRef50_C7QE93(14-101:104) Integration host factor n=7 Tax=Bacteria RepID=C7QE93_CATAD E=4e-09 s/c=0.71 id=35% cov=98% ALAKAGEVRRARSEMLADVKAGKLSLKAVLDRAAKgEEMVKKTKVTALIKALPGYGPAKAAKLMADAEIDENRRIGGLGDRQRQALLA--- >UniRef50_Q6AF82(3-52:254) Guanylate kinase n=44 Tax=Actinobacteria (class) RepID=KGUA_LEIXX E=7e-05 s/c=0.97 id=35% cov=53% ---------------------------------------GRIRVTEFLLSVPAIGTTKTQDALRRLGIAPSKRLGGLGRHQRLRLR---- >UniRef50_Q1AVZ2(16-103:108) Putative uncharacterized protein n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AVZ2_RUBXD E=3e-08 s/c=0.68 id=29% cov=99% ALREANRVRFARAAAKRDLKSGRLGIYELLMDPPEE--LKGAKVEEMLLAVRGMGRVKVSRVMREAGISRAKTLVGLTHGQRDRLIRVLG # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 150 * * * * * * * * * * * * * * 3344 * * * * 1 0 * * * * * * 3384 0 0 L 2 * * * * * * * * * 338 3188 * * * 3337 * * * * * 2 0 * * * * * * 3384 0 0 E 3 1935 * 3344 1781 * * * * 2561 * * 3520 * * 3437 * * * * * 3 0 * * * * * * 3384 0 0 K 4 * * * 3437 * * * * 682 * * * * * 1814 * * * * * 4 0 * * * * * * 3384 0 0 A 5 0 * * * * * * * * * * * * * * * * * * * 5 0 * * * * * * 3384 0 0 A 6 1882 * * * * 2719 3636 3188 * * * 1797 * * * * * 3337 * * 6 0 * * * * * * 3384 0 0 A 7 2606 * * 1969 * * 3188 * * 3337 * * * * 1872 * 3344 * * * 7 0 * * * * * * 3384 0 0 A 8 2452 * * * * * * 3520 * * 3490 * * * * * 3188 912 * * 8 0 * * * * * * 3384 0 0 R 9 * * * * * * * * * * * * * * 0 * * * * * 9 0 * * * * * * 3384 0 0 R 10 2412 * * * 3437 * * * 2548 3207 * * * * 1874 3636 3520 * * * 10 0 * * * * * * 3384 0 0 E 11 1557 * * 1583 * * 3451 * 3622 * * * * 2702 * * * * * * 11 0 * * * * * * 3484 0 0 R 12 3490 * * * * * * * * * * * * * 135 * * * * * 12 0 * * * * * * 3608 0 0 A 13 655 * * * * * * * * * * * * 3631 * 2177 3982 * * * 13 0 * * * * * * 3608 0 0 E 14 2657 * 3990 785 * * * 3701 * * * * * 3045 * * * * * * 14 0 * * * * * * 3766 0 0 V 15 3795 * * * 2741 * * 2217 * 2233 3172 * * * * * * 2546 * 3869 15 0 * * * * * * 3766 0 0 K 16 * * * * * * * * 694 1989 * * * * 2943 * * * * * 16 0 * * * * * * 3766 0 0 N 17 1644 * 4580 * * 4216 * * 3756 * * 2511 * 4384 1800 * * * * * 17 0 * * * * * * 3764 0 0 R 18 1953 * 1942 * * * * * 3216 * * * * 3059 1979 * * * * * 18 0 * * * * * * 3764 0 0 L 19 * 3550 * * * * * 2856 * 884 * * * * * * * 2092 * * 19 0 * * * * * * 3764 0 0 K 20 3470 * * * * * * * 597 * * * * * 2947 3069 * * * * 20 0 * * * * * * 3764 0 0 H 21 1965 * 2256 * * * 4172 3756 * * * * * 3838 4580 2357 3352 * * * 21 0 * * * * * * 3764 0 0 S 22 * * * * * 181 * * * * * * * * 4006 4172 * * * * 22 0 * * * * * * 3764 0 0 G 23 3352 * * 2193 * 3361 * * 4274 3756 * 2784 * * 2408 4135 3838 * * * 23 0 * * * * * * 3764 0 0 A 24 3049 * * * * * * 2784 * 1459 3756 * * * * * 3479 2276 * * 24 0 * * * * * * 3764 0 0 S 25 3936 * * * * 3851 * * * * * 4580 3550 * * 1094 1890 * * * 25 0 * * * * * * 3764 0 0 L 26 3470 * * * 3756 * * 2317 * 1589 * * 3550 * * * * 2203 * * 26 0 * * * * * * 3764 0 0 H 27 2144 * * 1958 * 4135 3049 * 4274 4216 * * * * 4006 4064 4580 * * 3851 27 0 * * * * * * 3764 0 0 E 28 3296 * 4216 1333 * * * * * * * * * 2146 3838 * 2723 * * * 28 0 * * * * * * 3764 0 0 V 29 2243 * * * * * * * * 2290 3756 * * * * * * 971 * * 29 0 * * * * * * 3764 0 0 I 30 * * * * * * * 2828 * 219 * * * * * * * * * * 30 0 * * * * * * 3764 0 0 K 31 3919 * 1749 2813 * * * * 2545 2856 2893 4320 * * * * * * * * 31 0 * * * * * * 3764 0 0 Q 32 2908 * 3170 2927 * * * * 4064 3756 4006 * * 2995 2684 3470 * 4135 * * 32 210 * 2884 * * * * 3764 0 0 G 33 1100 * * * * 2266 * * * * * * 2702 * * 3308 * 3820 * * 33 225 * 2793 * * 951 1051 3588 0 1634 Q 34 2789 * 2124 4268 * * * * 3550 * 3852 * 1859 3789 3804 * * * * * 34 0 * * * * 1525 616 3483 0 2030 E 35 3517 * 2184 2789 * * * * 3082 * * 3859 * * 3912 3073 3746 * 3306 * 35 214 3986 3746 0 * 966 1034 3564 1000 1579 N 36 * * 1359 1402 * 3530 * * * * * 2784 * * * * * * * * 36 482 3530 2340 0 * 1034 967 3529 1000 1648 D 37 3487 * 2256 1593 * * * * * * * * 1869 3376 * * * * * * 37 0 * * * * 1655 551 3313 0 1861 V 38 1819 * * * * * * 3345 * * 4010 * * * * * 4012 1321 * 3414 38 0 * * * * 0 * 3479 0 1610 I 39 1720 * * * * * * 2390 * 1831 * * * * * * * 2153 * * 39 0 * * * * * * 3764 0 0 G 40 1617 * * 3982 * 1706 * * 3124 * * * * * 3346 3458 * * * * 40 0 * * * * * * 3773 0 0 K 41 * * * * * 3162 4148 * 1916 * * * * 4270 1780 2639 3982 * * * 41 0 * * * * * * 3773 0 0 X 42 2880 * * * * * * 2626 * 2270 1608 * * * * * 3232 4051 * * 42 0 * * * * * * 3745 0 0 K 43 3458 * * * * * * * 1038 * * * 4001 * 1476 * * * * * 43 0 * * * * * * 3773 0 0 V 44 3131 * * * * * * 3458 * * * * * * * * * 331 * * 44 0 * * * * * * 3773 0 0 S 45 * * * 2770 3982 2704 * * 2922 3346 * * * * * 1909 3580 4148 * * 45 0 * * * * * * 3773 0 0 A 46 2773 * 2247 2135 * * * * * * * * * 2443 4004 * 3911 4154 * 4426 46 0 * * * * * * 3773 0 0 L 47 3845 * * * 3114 * * * * 916 2970 * * * * * * 2667 * * 47 0 * * * * * * 3773 0 0 L 48 3618 * * * * * * 3069 * 323 * * * * * * * * * * 48 0 * * * * * * 3773 0 0 E 49 * * * 1676 * 3845 * * 3238 2621 2705 * * 4270 2797 * * * * * 49 0 * * * * * * 3773 0 0 S 50 957 4154 * * * * * * * * * * * * * 1222 * * * * 50 0 * * * * * * 3773 0 0 L 51 * * * * 3618 * * * * 748 3845 * * 3458 * * * 2621 * * 51 0 * * * * * * 3773 0 0 P 52 * * * * * * * * * * * * 245 * 2679 * * * * * 52 0 * * * * * * 3773 0 0 G 53 4876 * * * * 737 * * 2716 * * * * * 2763 3911 * * * * 53 0 * * * * * * 3773 0 0 V 54 * * * * * * * 1754 * * 3940 * * * 3911 * * 1744 3458 2455 54 0 * * * * * * 3773 0 0 G 55 * * * * * 99 * * * * * * * * * * * 3911 * * 55 0 * * * * * * 3773 0 0 K 56 2955 * 4148 * 3845 * * * 2803 * * * 2418 4413 2961 2705 3541 * * * 56 0 * * * * * * 3773 0 0 V 57 2012 * * * * * * 4154 4148 * * * * * 4426 * 3000 1096 * * 57 0 * * * * * * 3773 0 0 R 58 * * * * * * * * 1372 * * * * 3911 1445 * 2475 * * * 58 0 * * * * * * 3773 0 0 A 59 561 3458 * * * * * * * * * * * * * * 2591 3940 * * 59 0 * * * * * * 3773 0 0 K 60 2625 * * 4001 * 4413 * * 4200 * * 3982 * 1489 2401 3940 * * * * 60 0 * * * * * * 3773 0 0 Q 61 4413 * 4876 2597 * * * * 1810 * * * * 2473 2146 4004 * * * * 61 0 * * * * * * 3773 0 0 I 62 3375 * * * 3458 * 4270 1356 * 3069 4154 * * * * * * 2359 * * 62 0 * * * * * * 3773 0 0 X 63 * * * * * * * 3904 * 1392 1104 * * * * * * 3521 * * 63 0 * * * * * * 3745 0 0 E 64 2418 * 3911 1729 * * * * * * * 4154 * * 2567 * 2574 4270 * * 64 0 * * * * * * 3773 0 0 R 65 2798 * 2201 2145 * * 4148 * * * 3458 * * 3982 2884 3911 * * * * 65 0 * * * * * * 3773 0 0 L 66 3124 2788 * * 3458 * * 2682 * 1018 * * * * * * * * * * 66 0 * * * * * * 3773 0 0 G 67 * * * 2753 * 1194 2228 * 4413 * * * * * 2696 * * * * * 67 0 * * * * * * 3773 0 0 I 68 * * * * * * * 273 * 3458 * * * * * * * 3618 * * 68 0 * * * * * * 3773 0 0 S 69 940 * 3379 * * * * * * * * * * * 3618 1731 * * * * 69 0 * * * * * * 3773 0 0 E 70 * * 2727 1244 * * * * * * * * 1668 * 3157 * * * * * 70 0 * * * * * * 3773 0 0 S 71 3940 * * * * 2727 * * * * * 3238 * * * 1440 1693 * * * 71 0 * * * * * * 3773 0 0 R 72 * * * * * * * * 1630 * * * * * 563 * * * * * 72 0 * * * * * * 3773 0 0 R 73 * * * * * * * * * * * * * * 357 3458 2961 * * * 73 0 * * * * * * 3773 0 0 V 74 * * * * * * * 2177 * 1422 * * * * * * * 1302 * * 74 0 * * * * * * 3773 0 0 R 75 4004 * * * * 1735 * * 3845 * * * * 3346 1631 3618 * 3940 * * 75 0 * * * * * * 3773 0 0 G 76 * * * * * 394 * * * * * * * * * 2066 * * * * 76 0 * * * * * * 3773 0 0 L 77 * * * * * * * 4004 * 93 * * * * * * * * * * 77 0 * * * * * * 3773 0 0 G 78 * * * * * 357 * * * * * * * * * 3982 2679 * * * 78 0 * * * * * * 3773 0 0 S 79 4270 * 3443 3458 * * 3040 * * * * * * 2993 4876 3308 3911 2088 * 3618 79 0 * * * * * * 3773 0 0 N 80 * * * * * 2925 1966 * * * 3618 4200 * * 1070 * * * * * 80 0 * * * * * * 3773 0 0 Q 81 * * * * * * * * * * * * * 0 * * * * * * 81 0 * * * * * * 3773 0 0 I 82 4004 * * * * 3618 * 3174 * * * * * * 537 4154 * * * * 82 0 * * * * * * 3773 0 0 A 83 1258 * 3162 4004 * * 3458 * 3485 4876 * * 3618 4335 4001 * * * * * 83 0 * * * * * * 3773 0 0 S 84 1278 * * 3982 * 4148 * * 3002 * * * * * 1793 4200 * * * * 84 0 * * * * * * 3773 0 0 L 85 * * * * * * * * * 93 4001 * * * * * * * * * 85 0 * * * * * * 3773 0 0 E 86 4067 * * 4109 * * * 1968 * 2531 * * * * 2526 * * 1836 * * 86 0 * * * * * * 3588 0 0 R 87 2005 * 3428 1181 * * * * * * * 3710 * * 2833 * * * * * 87 0 * * * * * * 3584 0 0 E 88 * * * 2629 3831 * * * 2955 1524 * * * * * * * 2305 * 3489 88 0 * * * * * * 3360 0 0 F 89 * * * * 391 * * * * 2074 * * * * * * * * * * 89 0 * * * * * * 3063 0 0 G 90 * * * * * 0 * * * * * * * * * * * * * * 90 0 * * 0 * * * 2606 0 0 //