HHsearch 1.5 NAME c4ikgA_ FAM FILE c4ikgA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4ikgA_.a3m DATE Sat Jun 7 08:13:11 2014 LENG 78 match states, 78 columns in multiple alignment FILT 43 out of 47 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.1 EVD 0.4187 0.8625 SEQ >ss_dssp CCCEEEEECTTSCCEEEEECSSHHHHHHHHHHHTTCSSCCCEEEETTTCCEECSHHHHHHSCTTCEEEEECSSCCCCC >sa_dssp EDBCADAABCECEDDDEBDAECCECABDDACEDBECEDDBECAABCEDCDEBEDDEDADECDEECCAABBDDEEECEE >ss_pred CCCCEEEECCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCEEEECCCCCEEECHHHHHHCCCCCEEEEEECCCEECC >ss_conf 987648870887745989838889999999997298987608999168968406678851889829999817884078 >Consensus xxkPfkVxdxxRxxkxGVxAxsLxeLxxKxxxklxixxxxxxlvLexDGTeVddEdYFxtLpxnTxlvxLxxgekWxP >c4ikgA_ RARPCRVSTADRKVRKGIMAHSLEDLLNKVQDILKLKDKPFSLVLEEDGTIVETEEYFQALAKDTMFMVLLAGAKWKP >UniRef50_A7SSA1(7-82:199) Predicted protein n=1 Tax=Nematostella vectensis RepID=A7SSA1_NEMVE E=2e-21 s/c=1.36 id=34% cov=99% RRRPFKVCNSQRSCTIGIVAESFVEMKARGSEKLNIA-RDCRVFLEEDGTEVDDEEYFSFLPDQTKLMLVEPGSSWT- >UniRef50_B7PJN6(8-85:231) Putative uncharacterized protein n=1 Tax=Ixodes scapularis RepID=B7PJN6_IXOSC E=2e-21 s/c=1.32 id=39% cov=99% --KPHKVWSCDRQTRKCVVASCLDELRTKGAAKLGYSNPfDLKIVLEIDGTEVEDENYFQRAERDTVFLMLQPSEKWLP >UniRef50_C3YR00(3-78:327) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3YR00_BRAFL E=1e-20 s/c=1.32 id=32% cov=99% -SKPFKIRSADDSQKYGVAAQDLNDLIAKGCKVLKVPIKGCKICLQQDGTLINSREFFQALPPLSVLVFLRKGEKWT- >UniRef50_D0AB91(3-77:355) Putative caspase-activated DNase n=1 Tax=Heliconius melpomene RepID=D0AB91_9NEOP E=7e-16 s/c=1.13 id=28% cov=95% --KGYKVTDVKRVKKIGVAAENLEELIEKSCKKLgfNVSCANCRLFVAEDGTQVDDDDYLKTLPSQTLFILLQEDEK--- >UniRef50_Q6VTJ7(27-75:136) Putative uncharacterized protein n=1 Tax=Choristoneura fumiferana DEF MNPV RepID=Q6VTJ7_NPVCD E=0.0003 s/c=0.94 id=28% cov=64% -----------------VAARSLGEVVDWANAQWSCAGVHVFL---RDGTLVDDEDYFACLPPGTSFVA--------- >UniRef50_UPI000186E56C(13-91:204) DNA fragmentation factor subunit alpha, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E56C E=1e-22 s/c=1.35 id=35% cov=101% KGQPFKIMDYTKEHKFGIVASDLSDLIKKACIKLNIvPGTPVKVTLEQDGTEVEDEDYFSTLEKNTALMILINDQKWLP >UniRef50_O61464(12-85:299) DNAation factor DREP-1 n=13 Tax=Drosophila RepID=O61464_DROME E=4e-22 s/c=1.42 id=31% cov=96% --KPFKVKDVTRNIKKAVCASSLEEIRSKVAEKFEKCDHLPTIHLDSDGTEIDDEEYFRTLDENTELVAVFPGEHW-- >UniRef50_O76075-3(4-79:116) Isoform Gamma of DNA fragmentation factor subunit beta n=5 Tax=Catarrhini RepID=O76075-3 E=7e-14 s/c=1.03 id=29% cov=81% --------------KFGVAGRSCQEVLRKGCLRFQLPERGSRLCLYEDGTEL-TEDYFPSVPDNAELVLLTLGQAWQ- >UniRef50_A5IZN7(97-163:185) Putative uncharacterized protein orf35 n=1 Tax=Spodoptera litura granulovirus RepID=A5IZN7_9BBAC E=1e-10 s/c=1.01 id=37% cov=77% -AKPVRV--YNDTIKVGILCYSLDDLKYKISTRFGMDKKDIVVCLD-DGTLIETEDYFKTVAD--------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * R 1 * * * * * * * * 1390 * * * * * 694 * * * * * 1 0 * * * * * * 2497 0 0 A 2 2438 * * 3890 * 4128 * * * * * * * 1543 3966 1817 * * * * 2 0 * * * * * * 3415 0 0 R 3 * * * * * * * * 898 * * * * 4953 1214 * * * * * 3 0 * * * * * * 4002 0 0 P 4 4032 * * * * 2722 * * * * * * 345 * * * * * * * 4 0 * * * * * * 3997 0 0 C 5 * 2940 * * 1034 * 4731 * * 5211 * * * * * * * 3842 * 2017 5 0 * * * * * * 3957 0 0 R 6 * * * * * * * * 597 4831 * * * * 1858 * * 5170 * * 6 0 * * * * * * 3957 0 0 V 7 * * * * * * * 1421 * 4834 * * * * * * * 758 * * 7 46 * 4980 * * * * 3994 0 0 S 8 * 2033 * * 4755 * * 5022 3480 * 5251 * * 5217 3162 3393 2434 5563 2923 * 8 0 * * * * * 0 3997 0 1000 T 9 * 5493 1025 * * * * * * 5105 * 2364 * * 4828 2670 3824 * * * 9 0 * * * * 0 * 3997 0 1000 A 10 3700 4739 * 5368 * 3571 2738 4040 5135 * * 3348 4161 * * 3063 * 2751 5521 3410 10 0 * * * * * * 3994 0 0 D 11 * * 2420 2879 5159 5181 * * 2880 5368 * 2572 * 5269 * 3777 2915 * 5220 4834 11 0 * * * * * * 3994 0 0 R 12 * * 3884 * * 5329 * * 4014 * * * * * 424 3320 * * * * 12 0 * * * * * * 3994 0 0 K 13 5569 * * 2880 * 5695 * * 3264 * * 3033 * 3321 3980 2044 2590 5298 * * 13 0 * * * * * * 3994 0 0 V 14 * 5269 5181 4834 * 5329 4191 2597 2830 * * 4737 * 4795 2974 5409 2726 2732 * * 14 54 * 4755 * * * * 3994 0 0 R 15 * 5238 * * * * * * 1065 5060 * * * 4811 1306 * 5293 * * * 15 0 * * * * * 0 4080 0 1000 K 16 * * * * 4133 * 4034 2804 1281 * * * * * 4294 * * 3549 * 2389 16 0 * * * * 0 * 4080 0 1000 G 17 3588 4703 * * * 237 * * * * * * * * * 5062 * * * * 17 0 * * * * * * 4080 0 0 I 18 * * * * 5223 * * 1805 * 3303 * * * * * * * 772 * * 18 0 * * * * * * 4116 0 0 M 19 1882 5231 * * * 3849 * 5520 * 4170 3352 * * * * * 2198 2062 * * 19 0 * * * * * * 4116 0 0 A 20 254 3599 * * * 5098 * * * * * * * * * * * 4331 * * 20 0 * * * * * * 4116 0 0 H 21 3759 * 3828 4356 * 2933 5658 * 4866 * 5891 4537 * 4846 3139 2004 3094 * * 4402 21 0 * * * * * * 4116 0 0 S 22 * 3812 4105 * * * * * * * * 4099 * * * 646 2529 * * * 22 0 * * * * * * 4116 0 0 L 23 * 5098 * * 4317 * * * * 257 * * * * 4335 * * 4866 * * 23 0 * * * * * * 4116 0 0 E 24 3531 * 3218 1759 * 5153 4154 * 3273 * * 4846 * 3298 4440 3112 * 5334 * * 24 0 * * * * * * 4116 0 0 D 25 * * 1756 755 * * * * * * 3966 * * 5362 * * * 5432 * * 25 0 * * * * * * 4116 0 0 L 26 * * * * 5096 * * 5291 * 240 5348 * * * * * * 3757 * * 26 0 * * * * * * 4125 0 0 L 27 * * * 5202 * * * 2591 2736 2080 5096 * * * 1684 * * 3648 * * 27 0 * * * * * * 4125 0 0 N 28 2832 5987 3081 2843 * * * 3884 5446 5784 5415 4211 * 5544 4153 2786 3002 5325 * 5177 28 0 * * * * * * 4125 0 0 K 29 4829 * 5987 * * * * 5889 404 * * * * 5262 3025 * * * 5180 * 29 0 * * * * * * 4125 0 0 V 30 1389 * * * * 1680 * 3993 * * * * * * * 5387 5462 2346 * * 30 27 * 5737 * * * * 4125 0 0 Q 31 2652 1873 * * * 5566 * * 3363 3793 5294 4272 5881 4350 2822 3429 * * * * 31 0 * * * * * 0 4120 0 1000 D 32 3427 * 2780 2099 * 5839 5528 5422 2794 4362 * 4605 * 3355 4823 4427 5161 5371 * * 32 0 * * * * 0 * 4120 0 1000 I 33 3012 * * * * * 5168 4243 1135 4873 * * * 5180 3778 3565 3531 4858 * * 33 31 5544 * 1000 1000 * * 4125 1000 0 L 34 * * * * 1793 * * * * 548 * * * * * * * * 5180 * 34 100 5387 4545 1000 1000 * * 4125 1000 0 K 35 4833 * 5036 4519 5329 2886 * * 2633 3954 4196 2029 * 4507 * 3021 * 4714 * * 35 0 * * * * * 0 4130 0 1137 L 36 * 5209 * * 4447 * * 1724 5283 1617 4465 * * * 4741 * * 2719 * 4709 36 396 2540 3879 248 2663 0 * 4130 2403 1137 K 37 2301 4380 4281 3713 * * * * 3728 * * * 1571 * * 2388 5775 * * * 37 111 4376 5261 0 * 0 * 4111 1504 1661 D 38 5522 4253 2995 3002 * 3429 * 4835 5152 3193 * 2332 4857 5802 4559 3418 5433 * * * 38 137 5352 3917 1000 1000 0 * 4115 1000 1000 K 39 2822 * 4070 2387 * 4075 5201 * 3250 4457 * * 4780 4166 3712 5643 3769 3199 * * 39 180 4780 3627 0 * 1206 820 4151 1000 1788 P 40 * * 2369 4458 * 3182 5029 * * 3509 4245 4463 2039 5406 * 3367 * 3828 * * 40 117 * 3681 * * 296 2430 4048 0 2478 F 41 3828 2847 * * 4162 * * 3510 * 1965 * * 5041 * 5306 4989 * 1720 * * 41 0 * * * * 459 1876 4095 0 2089 S 42 5742 * * * 4419 * 4497 4815 2734 * * 5765 * * 1836 2876 2051 5134 * * 42 0 * * * * 0 * 4105 0 1000 L 43 * * * * * * * 1898 * 1190 * * 4829 * * * * 1954 * * 43 82 5167 5180 0 * * * 4125 1000 0 V 44 * 2663 * * 4357 * 3606 5033 * * * * * * * * 5369 819 * 3480 44 0 * * * * * 0 4133 0 1000 L 45 5100 4586 * * 5033 * * * * 194 * * * * * * * 5365 * * 45 26 5788 * 1000 1000 * 0 4133 1000 1000 E 46 2273 * 3200 924 * * * * * 4066 * * * 4880 * * * * * 3981 46 90 * 4043 * * 0 * 4133 0 1000 E 47 * 4004 4247 1449 * * * 4742 * 4991 * 3589 * 2954 5164 2491 4972 * * * 47 0 * * * * 0 * 4113 0 1488 D 48 * * 0 * * * * * * * * * * * * * * * * * 48 0 * * * * * * 4167 0 0 G 49 * * * * * 0 * * * * * * * * * * * * * * 49 0 * * * * * * 4167 0 0 T 50 * * * * 4534 * * * * * * * * * * 5149 177 4507 * * 50 0 * * * * * * 4167 0 0 I 51 5982 * 7437 1085 * * * 3066 * 3471 5872 * * 3320 4805 5962 4927 3386 * * 51 0 * * * * * * 4167 0 0 V 52 * * * * 4894 * * 2113 * 4191 * * * * * * * 556 * * 52 138 * 3458 * * * * 4167 0 0 E 53 5056 * 1092 1556 * * * * * 5299 * 4677 * * 5212 4412 5483 * * * 53 0 * * * * 0 * 4019 0 1821 T 54 * * 799 5109 * * * * * * * 4805 * * 5288 2747 2426 * * * 54 0 * * * * * * 4167 0 0 E 55 * * 2584 475 * 5454 * * * * * 5153 5178 * 4831 * * * * * 55 0 * * * * * * 4167 0 0 E 56 4314 * 1209 1236 * * * * 4109 * * 4843 * * * * * * * * 56 0 * * * * * * 4167 0 0 Y 57 * * * * 2017 * * * * * * * * * * * * * * 409 57 0 * * * * * * 4167 0 0 F 58 * * * * 258 * * * * 2963 * * * * * * * * * 4805 58 0 * * * * * * 4167 0 0 Q 59 3768 * 4847 5288 * * 4894 5573 3346 3698 3969 5425 5099 1728 3095 3307 * * * * 59 0 * * * * * * 4167 0 0 A 60 3206 2977 * * 4237 * * * * 4379 * 5237 * * 4843 2709 1154 * * * 60 0 * * * * * * 4167 0 0 L 61 4843 * * * * * * 5153 * 183 * * * * * * * 4160 * * 61 0 * * * * * * 4167 0 0 A 62 2862 * 4557 1940 * 5456 * * * * * * 898 * * * * * * * 62 0 * * * * * * 4167 0 0 K 63 2470 * 1909 4574 * 5818 * * 4585 * * 4309 2215 * 4272 3664 4175 * * * 63 0 * * * * * * 4167 0 0 D 64 * * 2666 * * 4270 4874 * * 4802 * 1117 * 1945 * * * * * * 64 52 4811 * 1585 585 * * 4171 1000 0 T 65 3525 * * * * * * 5684 * * * * * * * 4044 308 5312 * * 65 0 * * * * * * 4171 0 0 M 66 5346 4375 * 2769 * * 5493 5081 3290 2805 5665 * 5287 * * 3962 3586 1971 * 4811 66 0 * * * * * * 4171 0 0 F 67 * * * * 1471 * * 5068 * 929 * * * * * * * 3569 * * 67 0 * * * * * * 4171 0 0 M 68 * * * * * * * 2434 * 3453 1411 * * 5144 * * * 1647 * * 68 0 * * * * * * 4171 0 0 V 69 2850 5607 * * 3447 * * 3016 * 1982 4776 * * * * * * 1574 * * 69 0 * * * * * * 4171 0 0 L 70 3900 * * * * * * * * 432 * * * * 4943 * * 2965 * 4998 70 0 * * * * * * 4083 0 0 L 71 4955 * 5201 2152 3460 4868 5639 5198 5003 5397 * * * 2809 2554 4819 3476 5141 * 5536 71 0 * * * * * * 4083 0 0 A 72 4296 * 5141 4128 * 3899 * * 2372 3861 * 4043 1742 5263 3875 3631 * * * * 72 0 * * * * * * 4083 0 0 G 73 * * 2403 4904 * 781 * * * * * 2664 * * * 4732 * * * * 73 0 * * * * * * 4083 0 0 A 74 5318 * 4824 1022 * * * * 5204 * * * * 1360 * 5039 * * * * 74 0 * * * * * * 3918 0 0 K 75 4792 * 6632 3938 * * 5030 4125 1077 * * * * 3817 5172 3218 4364 4758 * 4832 75 0 * * * * * * 3880 0 0 W 76 * * * * * * * * * * * * * * * * * * 0 * 76 0 * * * * * * 3817 0 0 K 77 4374 * * * * * * * 3411 3449 3219 * * 3399 2517 2835 2862 4925 * 3668 77 0 * * * * * * 3651 0 0 P 78 * * * * * * * * * * * * 0 * * * * * * * 78 0 * * 0 * * * 3152 0 0 //