HHsearch 1.5 NAME c4hs5B_ FAM FILE c4hs5B_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4hs5B_.a3m DATE Sat Mar 16 08:16:30 2013 LENG 105 match states, 105 columns in multiple alignment FILT 104 out of 134 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.6 EVD 0.4218 0.5550 SEQ >ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEETTCCEEEEEEEGGGTEEEEECSSCEEEEEEETTEEEETTTCCBHHHHHHHHHHHHHSCC CCCCC >sa_dssp DEDEDACDBACDBAEDACDBBEEDEBDBECEDEDCDABADBEDECDACACCCDEECBACACDEEEDCCADDDEDDBCBDEDDDCABECACDBADECCECE AEAEE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEECCCCEEEEECCCCCHHHHHHCCCCCCCEEEECCEEEECCCCHHHHHHHHHHHHHHHCCC CCCCC >ss_conf 9778999999999999999985047881178009989999689978998179821231331158985103057877253898259999999999981996 21069 >Consensus mtexefxxxadxxlxxixxxlexxxxdxDxxxxxgVLtixxxxxxxxVINkQxpxxQIWlaSpxgGxxfdxxxxxWixxrdgxxLxxxLxxelxxxxgxx vxfxx >c4hs5B_ MNDSEFIQLADQLYQKIEEKIEESGADVDYDQNGSLLTLEFENHTKLIINRQQPLHQVWLATLENGHHYDYNNGKWIDDRSGDEFLTFLSAAIFKQSKET VDFTE >UniRef50_Q5EU86(1-106:113) CyaY n=2 Tax=Buchnera aphidicola (Cinara cedri) RepID=Q5EU86_9ENTR E=1e-15 s/c=0.80 id=26% cov=99% MNNTlLFNHVFKKTLSIIDNELNRfvQYVDIDYIYQNNMINIIFENKKRIIINAQEYLNQLWMGTSKQGYHFIFKKKQWICIKTKKKFRDILKKEFLKQT NKKINF-- >UniRef50_A2FAS5(17-120:121) Frataxin, putative n=2 Tax=Trichomonas vaginalis RepID=A2FAS5_TRIVA E=2e-07 s/c=0.55 id=24% cov=92% -SDSAFKQKTADTLYSLcdffQAKYENKGDDFFAEATDNYLNISM-KGSQFLLSRQLPGHQIWVSSPVSGsLKFDYDNerNDWFDHKVKDRsLKVCLTEE LQTAFG------- >UniRef50_B0YLW8(7-100:107) Frataxin n=1 Tax=Trachipleistophora hominis RepID=FRDA_TRAHO E=2e-12 s/c=0.78 id=12% cov=89% -DQRSYLTAAHNTLTALEKKLDNDYGEI--EHNNNVIEYTVDGVGRYVVSRQPSVMELWVSSPITGPsKFGMVEKKFVEKKNGMEIMKYFEMEMER---- ------ >UniRef50_UPI000186E78F(76-188:197) frataxin n=1 Tax=Pediculus humanus corporis RepID=UPI000186E78F E=2e-26 s/c=1.05 id=25% cov=101% LDKVTFISVCTETLDSLTEYFEELIESIphlknaDVTYSDGVLTVYFGKKyGTYVINRQTPNLQIWLSSPtSGPKRYDFSGGTWIYKHDKTTLHSLLDKE IKEIANQKVEFSE >UniRef50_C6NVC0(1-103:105) Iron donor protein CyaY n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NVC0_9GAMM E=2e-19 s/c=0.94 id=25% cov=99% MSDETFALSAERTLEQILGQLEGNAPEVEADLVDSVLTLELPDSSTIVLNRQEAVEQIWLACSDGPARFQHTDRGWRDTQTDQELGEVLGTLIGRRLGRT LQI-- >UniRef50_B6A922(56-167:168) Frataxin-like domain-containing protein n=1 Tax=Cryptosporidium muris RN66 RepID=B6A922_9CRYT E=2e-17 s/c=0.81 id=25% cov=98% ---ADFNNKADQLLHIISEKIintQDQNLIDDIDCHNEFLNITFRykdrqSSGTIVISKQSATKQIWYSSPIRPPDYFEFESNWKSKRSGLSLFEALESD LFEGTGLKFNFLE >UniRef50_B3CVM5(1-103:110) CyaY protein n=2 Tax=Orientia tsutsugamushi RepID=B3CVM5_ORITI E=4e-14 s/c=0.77 id=23% cov=96% MLERNFIVLASQVISQIADSIISQDLDgiIDVNFIDEMILYITISTKQFVITGHTFARQIWLVSPISGpHHFSYIDNKWL-NRDKQDICTLIQTEINQLT GFNI---- >UniRef50_Q1IN64(1-105:110) Putative uncharacterized protein n=2 Tax=Acidobacteria RepID=Q1IN64_ACIBL E=1e-13 s/c=0.74 id=17% cov=94% MTDQEFQNHIEASTGSLKRSLYDAEADagFEVEEANGALQINFEDpPARFVVSPNSPVRQIWISALSTSFKLDWSDaaNDFVLTKTGEALKPLIARLINQ QLG------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 4407 * 1409 795 * * * * * * * * * 1 0 * * * * * * 5331 0 0 N 2 4702 * 2890 * * * * * 6477 5413 * 2704 * 5668 * 1825 1571 * * * 2 0 * * * * * * 5514 0 0 D 3 * * 1483 1363 * 5957 6356 5473 6546 6136 6657 4143 6235 4575 5963 5967 5384 * * * 3 0 * * * * * * 5533 0 0 S 4 2545 * 4463 3837 6833 6809 6597 5010 4268 4855 * 3711 6658 4670 3949 2197 2995 4880 * * 4 29 5638 * 0 * * * 5619 1000 0 E 5 3425 * 3455 1320 * * * * * 4922 * 4938 5052 2919 4373 4261 3526 * * * 5 0 * * * * * * 5625 0 0 F 6 * * * * 916 5212 * 6198 * 6718 * * * * * * * * * 1251 6 0 * * * * * * 5637 0 0 I 7 4499 * 4633 3472 6197 6728 1795 4570 5803 3276 6763 2387 * 3845 5147 4988 * * * 5563 7 0 * * * * * * 5637 0 0 Q 8 4195 * 3250 2951 * 7136 4837 5108 2545 4496 * 4711 * 2913 3602 4687 3398 4749 * * 8 0 * * * * * * 5653 0 0 L 9 3727 * * 7056 5265 * 4625 4204 4265 1408 * * 5244 4484 4066 5770 6582 2501 * 5008 9 0 * * * * * * 5657 0 0 A 10 1106 5090 * * 5824 4792 * 4234 * 5323 * * * * * 3224 3971 2298 * * 10 10 7194 * 2000 415 * * 5657 1000 0 D 11 5897 * 1139 2233 * 5247 6023 * 5138 * * 3736 * 6811 5332 3154 6224 * * 6405 11 12 6951 * 2000 415 * * 5667 1000 0 Q 12 2606 7111 3305 2270 7327 4503 6201 * 4125 4998 * 3542 7098 3131 4565 4329 4581 5247 * * 12 10 7174 * 2000 415 * * 5667 1000 0 L 13 3183 * 6744 5017 3724 * * 5921 * 2346 5615 * * 5265 * 4766 1537 3631 * 4254 13 13 * 6749 * * * * 5667 0 0 Y 14 * * * * 2417 * * 4661 * 669 4043 6177 * 6694 * * 5353 * 5954 5672 14 10 7131 * 2000 415 0 * 5667 1000 1000 Q 15 3774 * 1941 2443 5430 4958 4523 5468 6061 4642 7163 3754 * 3706 5324 4401 4324 6748 * 5897 15 0 * * * * * * 5667 0 0 K 16 2915 6285 3995 3877 * 5423 3989 5070 4865 5024 * 4653 * 3878 3479 2252 3502 4964 * 6048 16 11 7071 * 2000 415 * * 5667 1000 0 I 17 * * * 6347 5546 * * 1213 * 1209 6853 * * * * * * 3414 * * 17 18 6364 * 2000 415 * * 5667 1362 0 E 18 3371 5477 4153 1498 5173 5856 6559 * 5364 3326 * 5253 * 3816 4827 3776 5335 4701 * 5483 18 13 6811 * 1585 585 * * 5667 1000 0 E 19 4160 * 1809 1607 * 5778 * * 5113 6771 * 3961 * 4870 4286 4225 4258 6692 * 6785 19 0 * * * * * * 5667 0 0 K 20 2546 * * 5424 4273 6811 6559 4352 2718 5343 3842 4637 * 3838 3719 3301 4423 5674 * 3553 20 12 6891 * 2000 415 * * 5667 1000 0 I 21 4584 5767 * * 2454 * * 2167 * 1309 6819 * * * * * * 3162 * 6540 21 71 4373 * 1891 453 * * 5667 2636 0 E 22 * * 1476 1021 * 6321 * 5754 * * * 4611 6749 6358 * 5061 * * * 5364 22 137 3467 * 1555 600 * * 5667 3321 0 E 23 3292 * 2084 1570 * 6486 * 4942 4799 * * 3987 * 4353 5089 4166 4893 * * 6080 23 76 4287 * 1731 517 * * 5667 2642 0 S 24 2947 4088 4870 4989 4760 6097 4905 4242 5104 2219 5545 3866 * 3234 * 3690 6556 4045 * 5703 24 120 4113 5508 2097 384 * * 5667 3046 0 G 25 4099 6683 1781 3783 * 2144 7046 5401 * 3861 7077 5011 4313 5466 6908 5111 4776 6019 * 4594 25 98 4117 6977 1536 610 0 * 5649 2709 1653 A 26 2975 6774 2246 2856 * 6020 5665 4996 5828 3291 6343 * 3521 7149 5680 3419 6577 3463 6982 * 26 173 3146 * 2203 353 * 0 5668 2986 1000 D 27 * * 688 3034 * 3071 * 5205 7149 6198 * 4979 * 5830 * 5084 6422 * * * 27 265 2654 6799 1284 763 0 * 5668 4235 1000 V 28 3435 6059 4686 * 2835 5237 * 1870 * 2958 5307 * 6280 * * 4345 * 3221 * 3471 28 145 3641 6007 1744 511 0 * 5664 2960 1000 D 29 * * 604 2119 5883 * * * 6519 * * 6076 * * 5236 5382 * * * 5756 29 0 * * * * * 0 5636 0 1000 Y 30 3041 3162 * * 5013 * * 3214 * 3964 5747 6542 * 5236 6519 4671 5494 1686 * 3000 30 10 7130 * 4644 59 0 * 5636 1000 1000 D 31 5874 * 1903 1458 * * 6891 4509 * 5604 5779 4004 * 4110 7006 3476 5008 6433 * * 31 34 6347 6530 0 * * * 5667 1000 0 Q 32 4279 5689 * 4993 3547 5239 4547 4758 * 2178 * 4289 * 4504 3393 4221 5634 4515 * 2497 32 0 * * * * * 0 5660 0 1000 N 33 2634 6398 6039 5501 * 3689 3802 4832 5796 6693 * 3314 * 3877 * 2042 3237 4053 * * 33 38 5882 6744 0 * 0 * 5660 1505 1000 G 34 4214 * 2211 5608 5028 1581 5302 * * * 5447 3039 * 4634 * 3155 6007 * * 7213 34 0 * * * * * 0 5667 0 1000 S 35 * * 4356 4290 * 815 * * * * * 2528 * 7162 6111 3099 6766 * * 6512 35 14 6687 * 0 * 0 * 5667 1000 1000 L 36 4304 * * * 5281 * * 3424 * 4189 3616 5820 * * 6116 * * 632 * 5897 36 0 * * * * * * 5667 0 0 L 37 * * * * 5916 * * 3077 * 581 3813 * * * * 5030 6116 3638 * * 37 0 * * * * * * 5667 0 0 T 38 * * * 3364 * * * 6623 4742 5754 * 2732 * 3695 4751 3792 1034 6430 * * 38 0 * * * * * * 5667 0 0 L 39 4934 * * * * * 6116 1481 * 1242 6771 * * * * * * 2959 * 4882 39 0 * * * * * * 5667 0 0 E 40 5303 * 4272 2128 * 7206 5285 4065 3182 6588 6311 3896 5030 5492 5079 3303 2451 5635 * 6083 40 11 * 6988 * * * * 5667 0 0 F 41 4061 3499 5290 * 1392 * * 4153 * 2357 4863 * * * * * 3406 3942 * * 41 161 3840 4807 909 1097 0 * 5671 3007 1000 E 42 3311 * 2900 2562 * 2265 6019 5725 7000 * * 6599 2687 5819 4008 3957 6404 5387 * * 42 54 4755 * 1228 803 0 * 5621 2407 2148 N 43 5708 * 1707 3348 * 3675 * * 4323 * * 2068 5525 4836 6862 2958 6006 * * * 43 64 5061 6210 0 * * * 5667 1548 0 H 44 7608 * 6579 6630 5890 1635 4064 5502 2971 3467 * 4208 5359 6977 3584 4910 4524 3908 * 5469 44 54 4771 * 447 1909 0 * 5652 2131 1000 T 45 4659 * 5422 6061 * 1433 * 6326 3794 6467 6347 4528 * 4780 6559 2201 3024 6285 * * 45 10 * 7146 * * * * 5667 0 0 K 46 * * 5571 5818 6075 * 6528 6554 2637 5461 * * * 2363 3558 5414 1436 3854 * * 46 0 * * * * 0 * 5673 0 1000 L 47 * 5089 * * 2461 * * 1962 * 4491 5268 * * * * * * 3347 5457 1552 47 21 * 6116 * * * * 5667 0 0 I 48 * * * * * * * 1609 * 3411 5801 * * * * * 5014 918 * * 48 45 5014 * 1585 585 0 * 5657 1000 1000 I 49 * * * * 4067 * * 925 * 2268 * * * * * * * 2280 * * 49 0 * * * * * * 5667 0 0 N 50 * * * * * * * * * * * 432 5030 * * 2438 4526 * * * 50 0 * * * * * * 5667 0 0 R 51 5055 * * * * 5754 * 5247 1214 5132 * * 5364 * 1631 4053 4918 * 5332 * 51 0 * * * * * * 5667 0 0 Q 52 * * 5247 * * * 2654 * * 5030 * 4692 * 424 * * * * * * 52 0 * * * * * * 5667 0 0 Q 53 3222 * 5810 2585 * * * * 6556 5897 * * 1866 5096 5188 2988 2423 4743 * * 53 0 * * * * * * 5667 0 0 P 54 2395 * * * 5754 * * 6124 * * * * 546 6210 5247 4854 * * * 5830 54 0 * * * * * * 5667 0 0 L 55 3194 * * * * 5897 * * * 2686 4694 1404 5030 * * 3745 3297 3396 * * 55 0 * * * * * * 5667 0 0 H 56 * * * 4777 * 6692 2468 * 2105 5318 4478 4519 * 2644 2147 5632 * 5558 * * 56 0 * * * * * * 5667 0 0 Q 57 5030 * * 2256 * * * * 6080 6632 * 5247 * 496 * * * * * * 57 0 * * * * * * 5667 0 0 V 58 * * * * * * * 615 * 2079 * * * * 5030 * * 3649 * * 58 0 * * * * * * 5667 0 0 W 59 5030 * * * * * * * * * * * * * * * * * 45 * 59 0 * * * * * * 5667 0 0 L 60 5820 * * * 6540 * * 4457 * 805 3863 * * * * * * 2387 5500 3800 60 0 * * * * * * 5667 0 0 A 61 1089 * * * * 5830 * * * 5030 * * * * * 1110 * 5754 * * 61 0 * * * * * * 5667 0 0 T 62 2251 4916 6700 6320 * 6061 * * * * * * * * * 737 3063 * * * 62 0 * * * * * * 5667 0 0 L 63 6347 * * 6326 6080 6321 6786 * 2818 3764 6524 * 888 5502 3170 4675 * * * * 63 236 2727 * 1470 646 * * 5667 2991 0 E 64 3674 * 5536 5003 5158 4709 * 2553 4570 5622 7365 5969 * 5808 6326 1596 6321 2520 * * 64 0 * * * * * * 5667 0 0 N 65 6326 * * * * 1129 * * * * * 3824 * 4941 5281 1592 3839 * * * 65 21 6080 * 1585 585 * * 5667 1000 0 G 66 4305 * * * * 493 * * 6208 * * * 2313 * * 5364 * * * * 66 376 2125 * 749 1305 * * 5667 4131 0 H 67 4719 * * * 1906 * 3518 6061 2298 6433 * 4986 2634 * * * 5247 * 4737 3041 67 136 3470 * 0 * * * 5667 2940 0 H 68 * * 4334 4827 * 6632 1159 * 3846 * * * * * 1510 5435 * 6210 * * 68 51 4834 * 539 1682 * * 5667 1910 0 Y 69 * * * * 907 * * * * 5364 * * * * * * * * * 1176 69 0 * * * * * * 5667 0 0 D 70 3746 * 1061 4286 4530 4449 * 5830 4716 * * 3499 * 4755 4114 4795 * 5006 * * 70 21 6080 * 2807 222 * * 5667 1000 0 Y 71 4110 * * 4634 3544 6563 4103 5820 6405 3203 4772 5897 * 6811 5811 * * * 2317 1606 71 98 3934 * 946 1056 * * 5667 3078 0 N 72 4966 5297 2290 4099 5281 * * 3714 4542 6105 * 5549 * 3513 4528 3122 3869 2699 * 5028 72 177 3111 * 2247 341 * * 5667 3492 0 N 73 4981 * 1768 3038 * 2657 * * 4988 6405 * 2905 6228 4078 4376 4001 5234 6988 * * 73 101 3892 * 2295 329 * * 5667 2760 0 G 74 4475 * 3248 4293 * 1299 * * 3385 * * 2951 * 4975 4811 3765 5905 6700 * * 74 83 4157 * 1560 598 * * 5667 2870 0 K 75 4140 * 3290 3123 * 6486 4373 5712 2435 4007 * 5108 * 3311 3197 4061 3732 5229 * * 75 59 4645 * 669 1430 * * 5667 2310 0 W 76 * 6563 * * 4656 * * * * * * * * * * * * * 74 * 76 0 * * * * * * 5667 0 0 I 77 * 4143 * * 4732 * 5199 1864 4448 2916 6552 6522 * 6583 3068 * 5465 1990 * * 77 38 * 5253 * * * * 5661 0 0 D 78 3579 3412 1975 4597 * * 6720 * * 4385 * 3661 * * * 2359 7443 * * 2399 78 41 * 5174 * * 0 * 5620 0 1571 D 79 7033 * 3257 5385 * 7191 4597 5256 4012 3413 6072 3408 6503 4144 4945 3766 1560 7311 * 7486 79 13 * 6747 * * 0 * 5573 0 1000 R 80 6419 * * * * * 2908 * 2033 * * * * 5453 902 5622 5462 6681 * * 80 24 5897 * 0 * 0 * 5659 1699 1000 S 81 7035 * 1234 4253 7026 5272 * * * * * 3640 * 6465 * 2588 2277 5890 * * 81 82 4907 5493 1740 513 * * 5661 2126 0 G 82 4574 * 4173 4345 * 927 5603 * 3154 * * 3351 * 4479 * 5072 5517 * * * 82 0 * * * * 0 * 5669 0 1648 D 83 4545 * 3687 2314 * 3944 3821 6826 3801 4260 5177 6966 6493 4345 4583 3252 3910 3754 * 5227 83 84 4138 * 190 3020 * * 5681 2732 0 E 84 5018 * 3772 1653 * 5790 * 6367 3664 4659 * 4482 4754 7026 4887 2428 3161 6906 * * 84 17 * 6416 * * * * 5681 0 0 F 85 * * * 6342 2189 * * 4375 * 496 6506 * * * * * * * * * 85 0 * * * * * 0 5639 0 1000 L 86 7015 5723 4841 6371 3129 4173 2830 6657 3428 3465 2969 * 6426 5982 4181 4486 4271 * 3651 4786 86 0 * * * * * 0 5639 0 1000 T 87 3479 7022 2701 2512 * 5563 7015 6826 4653 6815 * 5119 4374 2890 5308 2960 3875 4229 * * 87 0 * * * * * 0 5639 0 1000 F 88 3900 5086 6639 * 2740 6492 6703 3499 5236 1701 4871 * * 6815 3401 * 4489 3575 * 4856 88 0 * * * * 0 * 5639 0 1000 L 89 * * * * 4545 * * 3843 * 414 4993 * * * * * * 3246 * * 89 0 * * * * * * 5681 0 0 S 90 3708 * 6071 2597 6603 4526 * * 4211 6180 * 2995 6260 3797 3212 2364 3470 5719 * * 90 13 * 6835 * * * * 5680 0 0 A 91 3353 * 4064 1988 * 5678 * * 2772 5790 5958 5105 * 3466 2803 4863 3704 * * 5940 91 0 * * * * 0 * 5667 0 1000 A 92 3034 * 4535 946 6629 * * 5468 * 2992 7071 * * 4975 * 5232 * 3912 * 5326 92 0 * * * * * * 5689 0 0 I 93 4087 4004 * * 3535 * * 1918 * 1376 4594 * * * * * * 3468 * 6524 93 33 7210 5974 0 * * * 5689 1000 0 F 94 6526 5959 * 3314 4881 4116 5573 * 4666 3618 * 3936 * 4185 3658 1555 4112 6275 6467 5859 94 0 * * * * * 0 5692 0 1357 K 95 2966 * 5279 2900 * 4418 * 4665 2592 4977 * 4914 * 2411 3218 5201 4074 * * 6238 95 0 * * * * * 0 5665 0 1357 Q 96 2736 * * * * 4324 4313 2466 4102 3938 5688 * * 1729 5294 * 6228 3906 5735 * 96 35 6479 6268 0 * * 0 5543 1000 1357 S 97 2392 5042 * * 2903 4259 * 6697 6739 2015 * * * 6430 * 3549 2578 4929 * 5086 97 0 * * * * 513 1740 5537 0 1871 K 98 6368 * 4638 3456 * 666 * * 4247 * * 3488 * 5476 * 4010 * * * * 98 34 6357 6473 0 * * 0 5494 1000 1000 E 99 * * 6276 2132 5257 5567 6119 3433 3019 3559 6794 6891 * 3546 3093 6589 3473 3722 * * 99 0 * * * * 0 * 5300 0 1390 T 100 3325 5935 2641 2836 * * 5495 * 3182 * * 4114 2316 6173 5256 4262 3316 * * * 100 19 6259 * 0 * * * 5295 1000 0 V 101 * * * * 3571 * * 1667 * 2415 * * * * * * * 1274 * * 101 0 * * * * * * 5285 0 0 D 102 * * 1924 3000 * 5895 * 5651 5481 * * 3313 * 3285 5779 2599 3080 4393 * * 102 0 * * * * * * 5103 0 0 F 103 * * * * 411 * * 3848 * 3755 * * * * * * * 4002 4577 * 103 0 * * * * * * 4853 0 0 T 104 1973 * 2231 * * * * * * 3693 * 4173 * * * 2208 2450 * * * 104 0 * * * * * * 4055 0 0 E 105 * * 2238 562 * * * * * * * * * 3174 * * * * * * 105 0 * * 0 * * * 3384 0 0 //