HHsearch 1.5 NAME c4hpmB_ FAM FILE c4hpmB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4hpmB_.a3m DATE Sat May 4 09:09:53 2013 LENG 81 match states, 81 columns in multiple alignment FILT 78 out of 82 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.0 EVD 0.4163 -0.2533 SEQ >ss_dssp CCCSCEEEEEEEEECCCEEEEETTCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTCBHHHHHHHHCTTCCSSEEEEEEC >sa_dssp EEEEEDCDABACEDEECECECCBECCADDBBEEBBEEDEDECEDBDBBAEEEEBDDECCADDACDEDBEEDEECADABBBE >ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCEECCCCCCEEEEEEEEECCCCCCEEEEECC >ss_conf 987422211133368824893687564899999999749981003477778685887560333667531667846688519 >Consensus xxxxExvxlxLxxLxkxYLrcpxxxtVxhLkKfLxxKlxlxxxxveixxxxexLxxxxTLxxVxxxxwxxrxxPlxLxYRI >c4hpmB_ QGTREQLNLCLERLSNKYVRCSVRAEVRHLRRVLCHRLMLNPQHVQLLFDNEVLPDHMTMKQIWLSRWFGKPSPLLLQYSV >UniRef50_UPI0000D56EAE(127-209:214) PREDICTED: similar to ring finger protein n=1 Tax=Tribolium castaneum RepID=UPI0000D56EAE E=3e-07 s/c=0.68 id=30% cov=95% ----ELINLCLECaftnqIKQVFVRVPTRTTVLYLKKFIARKIFKIEDlhSVVVFCNCEEVDERDTMKYIYLSKWKFDDVPLVLKCQ- >UniRef50_C3ZTD4(161-242:256) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3ZTD4_BRAFL E=4e-07 s/c=0.68 id=27% cov=100% -GTNPGVASQIKPLKKKYVRVSNQATVGHVQKFLLKKLELDSDtfQVDVLCNDEVIDRGLTLQTVEEILAQKVDGLIVLHYRV >UniRef50_B4LM44(338-438:1561) GJ21143 n=4 Tax=Drosophila RepID=B4LM44_DROVI E=5e-17 s/c=0.88 id=23% cov=100% -GPSDDMSLSLEYaelgelnaesavefgdtLRPRYLQCPAMCRVSHLKKFVYDKYEIDAQHfsIDIMYKVKtiVLQDYYTLMDIAYIYTWKRDAPMRFYF RV >UniRef50_Q5CSC1(203-281:284) Ring domain protein n=2 Tax=Cryptosporidium RepID=Q5CSC1_CRYPV E=7e-12 s/c=0.91 id=18% cov=96% ----ESINSEFFQLEKPYLIVPPQITIFHLQNYIMHKSNEKFEKIPSIFlkGGQILPRNHSLEFVCRSRRIPLDNLLILEFGI >UniRef50_Q19336(443-519:522) Protein F11A10.3, partially confirmed by transcript evidence n=13 Tax=Eukaryota RepID=Q19336_CAEEL E=1e-10 s/c=0.88 id=21% cov=89% ----------LPLITRPYVRCSEMTTMNTLKKFLSLQIwddQSRYSDLDMFCDGQLMGKDFSVRFVWMMKRRGqpKSEPLIIRYHM >UniRef50_D0NTE7(173-245:249) Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0NTE7_PHYIN E=6e-10 s/c=0.89 id=18% cov=88% ----------LPELKFPFMQVSGNFKMFELRKLIQKRLKVPDEvQFEMACMGATVGPELSVHFIQRTIWqhQKQKGPLVLHYR- >UniRef50_B4FZC1(225-294:337) Putative uncharacterized protein n=1 Tax=Zea mays RepID=B4FZC1_MAIZE E=1e-10 s/c=0.97 id=25% cov=85% ---REPV---LPQIAKSYLRIKdSNVTVAVVMKYLADKLGITPSHqVELTCRGQVLRPLLPLKYVRETIWCSTAPP------- >UniRef50_B8C1Q2(253-328:331) Putative uncharacterized protein n=1 Tax=Thalassiosira pseudonana RepID=B8C1Q2_THAPS E=8e-10 s/c=0.85 id=31% cov=89% ----------VERLKREYIRTSQDVTVKNLKMFLGQKLSyFPPSHFQILAtvggNAVILPDDTTLALIQRDICDVSAAPIVLHYRI >UniRef50_C4QL62(155-235:353) Polycomb complex protein bmi-1, putative n=3 Tax=Schistosoma RepID=C4QL62_SCHMA E=6e-09 s/c=0.76 id=16% cov=38% -----------------FLLCPPELTVGHIEKLIRMKFNLKPSEHEV---------------------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * Q 1 * * * 922 * * * * * * * * * 1082 * * * * * * 1 0 * * * * * * 1665 0 0 G 2 * * * * * 270 * * 2551 * * * * * * * * * * * 2 0 * * * * * * 2816 0 0 T 3 * * * * * * * * * * * * 1660 * * 2027 1190 * * * 3 0 * * * * * * 3020 0 0 R 4 * * * 3570 * * * * 3129 * * 1868 * * 2130 2551 2961 * * * 4 0 * * * * * * 3418 0 0 E 5 * * 3514 312 * * * * * * * 4329 4129 * * * * * * * 5 0 * * * * * * 4438 0 0 Q 6 4379 * 5228 4424 * 4270 * * 3502 3695 4999 5239 2778 1676 * 2788 * * * * 6 0 * * * * * * 4497 0 0 L 7 * * * * 5078 * * 1500 * 3617 4401 * 5043 * * * * 1128 * * 7 74 * 4319 * * * * 4613 0 0 N 8 3299 * 3956 * * * * * * * * 1427 4882 * * 1224 * * * * 8 66 * 4477 * * * 0 4414 0 1000 L 9 * * * * * * * 2409 3935 838 4852 * * 4474 * 3220 * * * * 9 78 4244 * 2807 222 * 0 4495 1000 1725 C 10 * 1521 * 4206 * * * * 4612 * * 3355 * 4233 * 1878 2905 * * * 10 52 * 4810 * * 1124 886 4495 0 1725 L 11 * * * * 3974 * * 5361 * 275 5163 * * * * * * 4118 * * 11 0 * * * * * 0 4938 0 1525 E 12 * 3640 4377 1147 4755 * * * 4281 * * * 1774 5416 * * 5989 * * * 12 0 * * * * * 0 4964 0 1525 R 13 5169 3483 * 3612 * * * * 4879 4791 * 4583 3566 2227 3171 * 4594 * * 2067 13 394 2066 * 3706 115 * 0 4964 3054 1525 L 14 5564 * * * 5926 * * 2669 * 491 * * * * * 6219 4077 * * 5587 14 67 4460 * 2293 329 751 1302 5163 1484 1525 S 15 4746 * 4693 3499 * 4633 5650 4617 2727 6537 * 5987 3284 4377 3506 2004 3856 * * * 15 34 5427 * 3807 107 * 0 5241 1645 1000 N 16 4489 * * 4851 5128 * 5854 4964 1169 * * 3713 4416 4491 2779 6225 4938 5732 * 5647 16 75 4310 * 3624 122 * 0 5193 2383 1000 K 17 * 5268 * 5124 * * * * 1795 * * * 2431 * 1539 3827 4988 5283 * * 17 0 * * * * 0 * 5217 0 1000 Y 18 * 6136 * * 2495 * * 6289 * * * * * * * * 5746 * 6557 384 18 0 * * * * * * 5179 0 0 V 19 * * * * 5203 * * 2386 * 717 4406 * * * * * * 2988 * * 19 0 * * * * * * 5179 0 0 R 20 * 4704 * * * * * 5226 3821 3408 * 6099 * 2534 869 7152 * * 5149 * 20 23 5979 * 0 * * * 5179 1000 0 C 21 * 728 * * * * * 3066 * 4933 * * * * * * 3567 2647 * * 21 0 * * * * * * 5179 0 0 S 22 4699 * 5979 * * * * * 3185 * * * 1108 5611 * 1510 * * * * 22 149 3349 * 0 * * * 5179 1966 0 V 23 1398 * 5552 5216 * 2648 * * * * * 5243 3934 4676 * 3068 4350 3137 * * 23 0 * * * * * * 5179 0 0 R 24 2770 * 3930 5296 * 3443 5759 * 4475 5458 4187 3449 * 3569 2073 4673 5423 4228 * * 24 31 5552 * 0 * * * 5179 1000 0 A 25 2994 5168 * * 3295 * * 3789 * 2508 2787 * * * * * 3515 1920 * * 25 0 * * * * * * 5178 0 0 E 26 6106 5130 * 4857 * * * * 3406 * * * 3647 5580 3685 4828 703 * * * 26 0 * * * * * * 5178 0 0 V 27 5732 * * * * * * 1682 * * 3751 * * * * * * 749 * * 27 0 * * * * * * 5172 0 0 R 28 3121 * * 4022 3695 2938 5316 5180 4774 4213 4790 4198 * 4746 3971 2652 4947 4440 * 4527 28 0 * * * * * * 5172 0 0 H 29 5254 * * 5354 5212 * 919 5732 * 4054 6074 3369 * 6121 * 4247 4451 4097 * 4989 29 0 * * * * * * 5172 0 0 L 30 * * * * * * * 3222 * 374 * * * * * * * 3046 * * 30 0 * * * * * * 5172 0 0 R 31 6024 * * 5352 * * 5043 * 1142 5984 4623 * * 2027 2738 * * * * 5316 31 0 * * * * * * 5172 0 0 R 32 * * * * * * 5913 * 370 * 5342 4231 * * 2925 * * * * * 32 0 * * * * * * 5172 0 0 V 33 * * * * 1049 * * * * 2428 * * * * * * * 4864 * 1753 33 0 * * * * * * 5172 0 0 L 34 * * * * 5455 * * 1897 * 738 * * * * * * * 3195 * * 34 0 * * * * * * 5172 0 0 C 35 2460 3800 * 6525 * 5342 * 4769 4900 2745 3603 6030 * 5354 2467 4163 6121 3965 * 4199 35 0 * * * * * * 5172 0 0 H 36 3795 * 4718 5982 * * 3741 5180 2450 3349 4073 3653 * 3155 4528 3515 4401 6511 * 4317 36 0 * * * * * * 5172 0 0 R 37 * * * * * * * * 211 * * * * 4081 3702 * * * * * 37 37 5316 * 2000 415 * * 5172 1197 0 L 38 * * * * 3131 * 6177 4405 * 1172 4563 * * * 5984 5260 * 4485 * 1988 38 106 3820 * 1294 756 * * 5172 2169 0 M 39 4628 * 2165 3735 5606 2415 * * 3909 5780 5791 2394 5202 4531 6196 3712 * * * * 39 58 4662 * 794 1240 * * 5172 1642 0 L 40 * * 5202 4650 5342 * * 2096 4821 1301 * 6281 * * * 4130 * 2761 5984 * 40 145 3387 * 0 * * * 5172 2475 0 N 41 4396 * 2384 4104 * 5780 * 3731 3264 * * 4213 2404 * 5228 2665 3681 * * * 41 166 3201 * 1684 538 * * 5172 3323 0 P 42 5083 * 3131 2563 5257 * * * 4428 6614 5441 4523 2304 6391 3372 2725 4361 * * 5219 42 151 3329 * 567 1622 * * 5159 2575 0 Q 43 3945 * 3169 2772 3065 * * 6278 5498 6110 5128 4404 * 4137 5439 2599 2958 6351 * 4420 43 401 2041 * 907 1099 * * 5160 4033 0 H 44 * * 3796 1886 * * 2013 * 3086 * * 6427 * 2878 4660 4288 * 5216 * 5234 44 272 2543 * 1024 976 * * 5189 3510 0 V 45 * * * 3877 4269 * 6579 2584 * 3824 5846 * 5216 * * * * 810 * 5816 45 33 5477 * 0 * * * 5189 1000 0 Q 46 * * 1724 1070 * * * 4975 * 6120 * 6195 5260 3517 * * * 4389 * * 46 0 * * * * * * 5189 0 0 L 47 * * 4975 * 5140 * * 1104 * 3086 3361 * * * * 5260 * 2100 * * 47 0 * * * * * * 5189 0 0 L 48 5336 5550 * * 3429 * * 2820 * 1573 2722 * * * * * 2900 5478 6271 4000 48 0 * * * * * * 5141 0 0 F 49 5236 1289 * * 3436 * 4372 * * 3755 * * * * 5478 * * * * 1613 49 171 3162 * 1187 834 * * 5144 2990 0 D 50 6196 * 4042 2385 * 3769 4871 * 2869 6147 4220 2103 * 5138 3005 5478 * 6173 * * 50 0 * * * * * * 5144 0 0 N 51 4548 4674 2224 3428 * 1548 6173 * * * * 3117 * 6626 4191 6196 * 4022 * * 51 24 5947 * 2807 222 * * 5144 1000 0 E 52 4438 * 3823 1140 * * 4057 * 4222 * * 6253 * 2503 6141 * 6969 3724 * 5138 52 141 3421 * 1163 853 * * 5144 2039 0 V 53 * 5188 * 4374 5015 * 6165 2515 * 3199 * 6191 2305 6009 * 4423 4294 1908 * * 53 0 * * * * * * 5145 0 0 L 54 * * * * * * * 4394 * 430 3539 * * * * * * 3008 * * 54 0 * * * * * * 5145 0 0 P 55 * 4289 3685 3968 * 2423 6409 6333 4941 4019 * 5123 1630 6687 5138 4788 * 4882 6141 5144 55 0 * * * * * * 5145 0 0 D 56 * * 2127 2814 * * 5345 6657 3389 7025 * 5806 2237 4830 3187 3244 6566 * * * 56 0 * * * * * * 5145 0 0 H 57 * 6056 2587 2818 6009 4989 2517 * 6141 5130 * 3005 * * 5647 3048 4422 * * 3320 57 18 6333 * 1585 585 * * 5145 1000 0 M 58 * * 5647 5144 2995 * 2570 5850 * 2206 4198 * * 5908 6056 4857 5233 5085 4727 2257 58 0 * * * * * * 5145 0 0 T 59 * * * * * * * * * 4956 * * 3567 * * 2098 692 5015 * * 59 56 4725 * 0 * * * 5145 1693 0 M 60 * * * * * * * 4705 * 537 2291 * * * * * * 3881 * * 60 0 * * * * * * 5145 0 0 K 61 5052 * 4052 2970 * * 4538 4163 2015 * 1758 * * 3911 4035 * * 6302 * * 61 0 * * * * * * 5271 0 0 Q 62 * 5797 1531 4215 1975 5836 5637 6326 * 4358 * 6090 * 4130 5737 * 5821 5066 * 3461 62 21 * 6090 * * * * 5315 0 0 I 63 5035 * * * * * * 1286 * 3958 6273 * * * * * * 1052 * * 63 31 5555 * 0 * * 0 5309 1458 1000 W 64 1897 4035 * 5110 * 4246 * * * 5428 6673 * * 3935 3016 6166 * 5181 2542 2703 64 0 * * * * 0 * 5342 0 1000 L 65 5574 5168 4557 4162 * * * 3805 6711 2921 3830 * * * 2598 * * 3543 * 1651 65 31 5553 * 1000 1000 * * 5356 1000 0 S 66 * 3350 4904 * 5860 5601 * 2116 * * 4466 5533 * * * 2532 2018 4339 * 3969 66 0 * * * * * * 5298 0 0 R 67 * * 4813 4621 3263 * 3642 2812 3391 5696 * * 6603 * 2518 5814 6311 * * 1904 67 0 * * * * * * 5298 0 0 W 68 4587 4551 5008 4147 * * 5632 * 4800 * * 5228 6707 6729 3273 4678 3340 * 1043 * 68 44 5068 * 1000 1000 * * 5298 1000 0 F 69 * 5490 4875 * 4686 * * 3682 3755 5275 * 5017 * 3003 2538 5182 6603 * 1588 5120 69 86 * 4112 * * * * 5233 0 0 G 70 5785 6629 3960 4394 4684 3030 * * 1638 5915 5231 4864 4047 6449 3739 3954 6425 4207 * 5461 70 72 4859 6116 1000 1000 0 * 5223 1000 1742 K 71 * * 5306 5279 * 6472 * * 1967 3742 * * 5218 3943 1347 4892 4788 4256 * * 71 16 * 6497 * * 0 * 5253 0 1000 P 72 2949 4949 2029 3285 * 5997 5538 6141 3335 4724 * 2721 4788 * * 3653 4840 * * * 72 72 * 4360 * * 0 * 5097 0 1000 S 73 1398 * 5364 3547 * 2757 * * 6111 * * 3407 5354 6105 * 3244 4799 3763 * * 73 25 5868 * 4524 64 0 * 5036 1000 1682 P 74 * * * * * * 5139 4189 6160 3159 5248 * 438 * * * * 5239 * * 74 0 * * * * * * 5097 0 0 L 75 * * * * * * * 3268 * 1213 1217 * * * * * 4842 * * * 75 0 * * * * * * 5068 0 0 L 76 3847 5226 * 4103 4825 * 5264 3832 4426 4139 * 4884 3738 5986 2369 * 3660 2228 * * 76 0 * * * * * * 5050 0 0 L 77 * * * * 2139 * * 4740 * 471 * * * * * * * * * 6155 77 0 * * * * * * 5050 0 0 Q 78 * 4202 * 4394 2814 5429 3016 * 2529 5665 * * * 2665 3424 5264 4244 * * 3533 78 0 * * * * * * 5050 0 0 Y 79 * 4909 * * 3272 * * * * * * * * * * * * * * 212 79 0 * * * * * * 4975 0 0 S 80 * * * * * 4873 4712 * 5963 * * 5930 * 3490 416 4132 * * * * 80 0 * * * * * * 4975 0 0 V 81 * * * * * * * 571 * 3755 4004 * * * * * * 2392 * * 81 0 * * 0 * * * 4591 0 0 //