HHsearch 1.5 NAME c4hlxD_ FAM FILE c4hlxD_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4hlxD_.a3m DATE Sat Mar 16 08:14:55 2013 LENG 99 match states, 99 columns in multiple alignment FILT 92 out of 96 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.9 EVD 0.4364 0.5589 SEQ >ss_dssp CHHHHHHHHHHHTCSTTCCBSSTTCCEEEEECCCTTSTTCCHHHHTHHHHHHHHHHCCCCSTTHHHHHHHHHHTTCTTEEEEEEEECTTSCEEEEEEEC >sa_dssp EBCDBACDBBEDEEBDBBDCDCDDEDDACABCADDECEDCCDECABCBABBBCEECEEDEEDCBBBEEABDBADECECBDDDDCDECDECCCBBBADCE >ss_pred CHHHHHHHHHHCCCCCCEEEECCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEHHCCCCCCCCCEEEEEEC >ss_conf 925899999725988981885788888996460388999880000089999999659878712378999999744945033000277887865787859 >Consensus xLRxWLxxqixsgxypGLxWxdxxkxxFrIPWkHxxrxxxxxexdxxiFkaWAxxxGkxxxgxxwKxnfRcAlnkxxdfxevxxxxxxxxxpxkVYrir >c4hlxD_ SIKDWIVCQVNSGKFPGVEWEDEERTRFRIPVTPLADPCFEWRRDGELGVVYIRERGASFKGTRGRRRMLAALRRTRGLQEIGKGISQDGHHFLVFRVR >UniRef50_C3XS91(24-130:508) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3XS91_BRAFL E=5e-14 s/c=0.74 id=24% cov=99% -LRRFFVSHLDAGDVPGVRWMDRSTGLFRIDWPRGGRSGFNSEKDGLIFKLWAQKTGQWKPGDeknptvwsEWKTRVRNALHRLKDFEEqTDLGKPNDlQ EPFRVYKL- >UniRef50_Q9J2J7(17-120:415) VIRF n=3 Tax=Macacine herpesvirus 5 RepID=Q9J2J7_9GAMA E=8e-17 s/c=0.85 id=27% cov=100% -LREWIVTHANLATYSGLFWADDEKTRVVLATTTPWSVGFDYLRDGKMYEDYCNQRNIPLPSGRsrlgqAKARLLGAIRKSAYFIEEKDVLRRSfSFANV VFRLR >UniRef50_D2KTW2(9-113:404) Interferon regulatory factor 10 n=2 Tax=Paralichthys olivaceus RepID=D2KTW2_PAROL E=8e-34 s/c=1.37 id=30% cov=100% -LKEWLISQIESGRYEGLSWEDEDRTMFRIPWKHAAKKDYKQTEDAALFKAWAVYKGKYIEGrdkadpTMWKTRLRCALNKSTDFQEVPERNQLDiTEPY KVYRIQ >UniRef50_Q53CW2(8-112:390) JM108 n=3 Tax=Macacine herpesvirus 5 RepID=Q53CW2_9GAMA E=1e-18 s/c=0.90 id=30% cov=98% -LKAWFIDAVESRRYPGVVWDDDDRTIIRIPWNRSTDSRID-EEYNKIFDDFCLARGVCQSGSTAhankfkKIRMLYAVRSHRYLRELtppSKAGGVSGE RYRLFQL- >UniRef50_Q4H3B0(12-114:433) Interferon regulatory factor like protein n=1 Tax=Ciona intestinalis RepID=Q4H3B0_CIOIN E=4e-22 s/c=1.02 id=15% cov=99% TLRNWLFNRLNEETYgDALKWDGNNKGVFHILWTK--KGDPNWENHFQIFVGWAKHKdrfdcNSPINYDKLKSNFRNLIKKTTDFEEIENVRNQQTGNRK VYRFR >UniRef50_UPI0001A2D9EE(3-105:155) Interferon regulatory factor 2 (IRF-2). n=1 Tax=Danio rerio RepID=UPI0001A2D9EE E=1e-21 s/c=1.01 id=15% cov=98% -MRPWLEEQINSCQIPGLKWVNKSLLIARVKRTHSNNGNaYNINSGSDSENSFCVVR-KYQPGDKpdpktWKANFRCAMNSLPDIEEVKDKSnKKGTNAF RVYKM- >UniRef50_UPI000180B675(11-109:399) PREDICTED: similar to Interferon regulatory factor 5 (IRF-5), partial n=1 Tax=Ciona intestinalis RepID=UPI000180B675 E=1e-11 s/c=0.71 id=22% cov=75% ----FLRERCDSGMY-NLRYLDAEQNLVFIPWPVAPRPTEELPPGFRIFQEWAELsfikRGltidQPEAPTTQKHRFRNALRKADG-------------- ------- >UniRef50_Q9J2J4(17-122:355) VIRF n=6 Tax=Macacine herpesvirus 5 RepID=Q9J2J4_9GAMA E=1e-17 s/c=0.86 id=22% cov=84% -LRAWLLDCCDNDKHPGMHWLDEEKTLVRLPWNHLKGAGGVSDDERNMYLDYCQFKGIRQTGNRRlsvrecKNWLASAIRHSQTVEDVS----------- ----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 1667 * * * * * * * * * * * * * * 1589 1504 * * * 1 0 * * * * * * 2231 0 0 I 2 * * * * * * * 3702 * 449 2392 * * * * * * * * * 2 0 * * * * * * 4544 0 0 K 3 * * * * * * * * 1788 * * * * 6436 565 5430 * * * * 3 0 * * * * * * 4678 0 0 D 4 3191 * 2558 2505 * * 5217 * 4861 * * 4425 1651 4475 5351 4690 6643 * * * 4 0 * * * * * * 4776 0 0 W 5 * * * * 3376 * * * * * * * * * * * * * 146 * 5 0 * * * * * * 5066 0 0 I 6 * * * * 4497 * * 3015 * 293 * * * * * * * 6001 * * 6 0 * * * * * * 5062 0 0 V 7 * * * 2758 5156 * * 2261 4927 2427 5656 * * * 3881 * 5807 1937 * 5059 7 0 * * * * * * 5062 0 0 C 8 3338 5221 3331 1585 * 4834 * * 4159 7082 7353 4286 4945 3872 5504 3214 4545 6352 * * 8 0 * * * * * * 5062 0 0 Q 9 3854 4187 * 5294 * * 3457 5497 3938 6167 4439 * * 976 3271 * * * * * 9 0 * * * * * * 5062 0 0 V 10 3854 4215 * * * * * 1534 * 2037 * * * * * * * 1795 * * 10 0 * * * * * * 5062 0 0 N 11 * * 1612 2301 * 6419 * * * * * 1675 * 4589 6529 3658 * * 6209 * 11 0 * * * * * * 5062 0 0 S 12 5066 * 6803 3988 * * * 5807 * 4119 * 3609 * 5288 4163 702 4950 * 6343 * 12 0 * * * * * * 5062 0 0 G 13 3841 5013 4947 3728 * 817 * * 4963 * * 3177 6419 * 4263 5845 * * * * 13 0 * * * * * * 5062 0 0 K 14 4011 7018 4694 3460 5248 * 7131 4567 2653 5034 4708 4929 * 2436 2989 5012 3136 * 6803 * 14 0 * * * * * * 5062 0 0 F 15 6167 5807 * * 3336 * 4947 3169 * 5045 * * * * * * * 3247 * 761 15 108 4298 5544 0 * * * 5062 1880 0 P 16 5351 * 4968 2947 * 5360 5402 * 5525 5038 * 6454 968 5374 4345 3521 5026 * * * 16 0 * * * * 0 * 4974 0 1000 G 17 5766 * 5475 * * 163 * * * * * 4892 * * 7187 5288 * * * * 17 33 5475 * 0 * * * 5062 1000 0 V 18 * 5807 * * 5392 * * 5497 * 539 4947 * * * * * * 2213 * * 18 0 * * * * * * 5062 0 0 E 19 5045 3442 6104 3229 3644 6278 3293 4697 3671 6346 6247 5544 * 2883 3728 3806 5915 3557 * 6209 19 0 * * * * * * 5062 0 0 W 20 * * * * 5360 * * * * * 5976 * * * * * * * 156 4005 20 0 * * * * * * 5062 0 0 E 21 3854 * 3299 2889 * * * 2876 5614 2109 4212 * * * * * 5222 2152 * * 21 23 5986 * 0 * * * 5062 1000 0 D 22 * * 814 * * 3520 6508 * * * * 1629 * * * 6707 * * * * 22 8 7469 * 5170 41 * * 5062 1000 0 E 23 3857 * 3748 1998 * 5050 5499 * 2601 6346 * 4549 4131 3829 2894 4419 7065 * * 5807 23 0 * * * * * * 5062 0 0 E 24 3945 * 2284 1478 * 7140 5248 * 4900 * * 3441 6278 5110 6022 2750 7372 * * * 24 23 * 5976 * * * * 5062 0 0 R 25 5328 5588 * 3663 * * 4951 * 1195 5442 7191 4883 * 4032 2151 6486 4474 * * * 25 52 * 4833 * * * 0 5063 0 1079 T 26 5446 * 5428 * * 2742 * * 3289 4797 4859 5326 * 4497 3559 5377 1141 * * * 26 0 * * * * 1337 727 4796 0 1500 R 27 * 6084 * 5587 * * * 2001 5004 2740 3486 * * 5517 2377 7939 3416 2918 * * 27 26 5821 * 0 * 0 * 4800 1000 1271 F 28 5448 * * * 336 * * 5314 * 5248 * * * * * * * 2909 * * 28 0 * * * * * * 5062 0 0 R 29 4971 5818 * 7154 5544 * 4613 * 2728 * * * * 3565 959 4496 7180 3640 * * 29 0 * * * * * * 5062 0 0 I 30 * * * * * * * 570 * 2873 5137 * * * * * * 2632 * * 30 0 * * * * * * 5062 0 0 P 31 3854 5288 5707 * * 4854 * * 4472 4613 * * 503 6278 * 6352 4845 * * * 31 0 * * * * * * 5062 0 0 V 32 5248 * * * * * * * * * * * * * 5448 * 4545 5221 183 * 32 33 * 5475 * * * * 5062 0 0 T 33 * * * * * 6496 * 5367 992 * 6320 3382 4589 * 5128 * 2202 4092 * 7099 33 0 * * * * * 0 5004 0 1000 P 34 * * * * * * 482 * 3643 * * * 5204 6230 3799 5242 4532 5489 * * 34 34 * 5443 * * 0 * 5004 0 1000 L 35 1268 * 6543 * 4188 3511 6820 6232 4509 3803 5127 4461 3777 4534 * 4397 * 4689 * 5838 35 0 * * * * * 0 4988 0 1000 A 36 2229 * 6111 * * 2260 * * 4197 3625 * 3373 5567 * * 2663 3241 * 4426 * 36 0 * * * * 0 * 4988 0 1000 D 37 5374 * 4223 * 6015 4511 * 6385 2328 5249 * 4431 * 5688 1252 3180 * * * 5083 37 0 * * * * * * 5015 0 0 P 38 4541 * 4772 * * 3948 2702 * 2838 * * 5901 2511 2024 4862 4512 * 4444 * * 38 0 * * * * * * 5015 0 0 C 39 5243 5136 1488 6747 * 1937 5401 * * * 6972 3443 6561 * 4344 4077 3729 * * * 39 235 5504 2963 0 * * * 5015 1000 0 F 40 * 4647 * 4570 2169 4811 * 4646 * 4354 * * 3503 * * 4578 * 6312 2873 1776 40 23 * 5961 * * 605 1547 4948 0 2803 E 41 4578 * 2027 3769 * 5117 * * 4188 * * 2255 * 4583 3427 3359 4664 4074 * 6032 41 148 * 3358 * * 0 * 4989 0 2102 W 42 7050 4617 5903 3575 * * 4591 3601 6929 4016 7004 6346 4318 2776 6099 3035 5139 4265 2734 3762 42 0 * * * * 0 * 5028 0 2643 R 43 6015 * 2081 1345 * * * * * 4444 5401 3947 5595 3456 5136 4439 4888 * * * 43 77 * 4271 * * * * 5015 0 0 R 44 3873 5448 3038 2481 * 6895 * * 2680 * 5128 4220 5481 4075 2459 4081 6471 5184 * * 44 42 * 5128 * * 0 * 5053 0 2280 D 45 * * 582 3411 * 3867 2993 * * * * * * * * * * * * 4517 45 37 * 5314 * * 0 * 4940 0 1000 G 46 1709 4988 5661 * 3396 2247 4910 5688 * 6561 * 4160 * * 4511 3414 * 3872 * 6363 46 0 * * * * 0 * 4957 0 1000 E 47 2490 4494 5504 3556 * 4569 * * 2185 4125 4603 5026 6123 4001 4040 4787 3630 5338 * * 47 0 * * * * * * 5015 0 0 L 48 * * * * 4668 * 5249 1059 * 2157 3057 * * * * 5504 * 3508 * * 48 0 * * * * * * 5015 0 0 G 49 * * * 5504 274 5136 * * * * * * * * * * * * * 3029 49 0 * * * * * * 5015 0 0 V 50 * * 3727 3782 * * * * 1068 5026 5207 5504 * 3938 2755 * * 3616 * * 50 18 6342 * 5098 43 * * 5015 1435 0 V 51 1157 * 2502 3333 * 4210 6670 * 5443 5004 * 5863 * 5158 4691 4569 * 4970 * * 51 0 * * * * * * 5015 0 0 Y 52 * * * * 4404 * * * * * * * * * * * * * 329 2675 52 0 * * * * * * 4956 0 0 I 53 373 2516 * * * * * 5105 * * 5371 * * * * * * * * * 53 52 4829 * 2872 212 * * 4956 1552 0 R 54 6206 * 5239 2977 * * * 2720 3137 3143 4838 3822 * 3872 4301 * * 2122 * * 54 0 * * * * * * 4956 0 0 E 55 3350 * * 3368 3267 * 1861 * 5749 3542 4306 6770 * 4431 * * 6823 3029 * 3573 55 30 5609 * 2000 415 * * 4956 1000 0 R 56 * * * * * * * * 2300 * * 6504 * * 1767 2729 1551 * * * 56 73 5186 5514 2236 344 * * 4956 1532 0 G 57 * * * 4972 * 426 5157 * * * * 2878 * * 5854 4562 * * * * 57 43 5555 6903 2000 415 0 * 5006 1000 1000 A 58 4043 * 6501 * 5891 6768 * 2955 1362 * * 4853 * 4674 2196 4542 5380 5297 * * 58 185 3057 * 2108 381 0 * 4964 2914 1000 S 59 * 5303 * * 2820 6630 4621 5366 6928 5117 * * 2266 * 4663 4227 * * 3289 1653 59 89 5325 4829 2685 244 * * 4956 1533 0 F 60 * 6806 4689 4570 3704 * 4386 5371 3012 3633 7286 3292 5258 2783 2849 5314 4465 3884 * * 60 49 4914 * 1964 427 * 0 4956 1805 1624 K 61 4674 * 2901 1976 * * 5342 * 4579 * * 4337 1653 6688 5402 4342 4986 * * 5341 61 9 7286 * 2322 322 * 0 4956 1000 1624 G 62 * * * 6894 5106 727 6535 * 4319 * * * 3601 5792 * 2707 * * * 4504 62 482 1816 * 2563 268 0 * 4956 3025 1624 T 63 3191 * 2372 6133 * 3203 * 6741 2923 * * 4621 5282 6330 3994 2561 3440 5046 * * 63 186 3047 * 2452 291 * * 4956 3135 0 R 64 * * 4266 5749 5360 * * * 2176 5909 4568 * 6778 5030 2050 4314 2097 4068 * * 64 330 2289 * 2669 247 * * 4956 3391 0 G 65 3778 * * * * 3972 * * * 4179 4964 * * 5609 4192 5319 * * 565 * 65 124 3605 * 2504 280 * * 4956 2101 0 R 66 * * * * * * * * 93 * * * * * 4004 * * * * * 66 12 6928 * 2807 222 * * 4956 1000 0 R 67 2137 * * * * 4673 5609 4857 * 5319 5360 5041 * 5253 3189 3746 1364 * * * 67 37 5319 * 2322 322 * * 4956 1000 0 R 68 * * * * * * * * * * * 897 * 5656 1313 * 6574 * 5041 * 68 0 * * * * * * 4956 0 0 M 69 * * * * 789 * * 5253 * 1634 4200 * * * * * * 5749 * * 69 0 * * * * * * 4956 0 0 L 70 5041 * * * * * * * * 2722 * * * * 290 * * * * * 70 0 * * * * * * 4956 0 0 A 71 4177 842 * * * 3779 * * * * * 3171 * * * 3042 4964 * * 4331 71 0 * * * * * * 4956 0 0 A 72 187 * 5360 * * * * 4964 * 4557 * * * * * * 6671 6266 * * 72 0 * * * * * * 4956 0 0 L 73 6211 * * * 5253 * * 2363 * 726 2879 * * * * * * 5303 * * 73 17 6389 * 2322 322 * * 4956 1000 0 R 74 * * 5937 * * * 3688 * 5746 * * 907 * * 1656 4761 * * * * 74 58 * 4665 * * * * 4956 0 0 R 75 5963 * 6326 * * * 4128 * 1176 * * 5511 * 6318 2720 1808 * * * * 75 60 4922 6962 0 * 0 * 4934 1261 1385 T 76 3853 4546 * * * * 3530 * 4771 2105 4093 6300 * 5917 * 1741 2927 6153 * * 76 0 * * * * 0 * 4954 0 1000 R 77 3936 * 4331 5005 * 5826 4888 * 2538 * * 5567 1707 4994 2602 4770 3836 * * * 77 0 * * * * * * 4948 0 0 G 78 * * 1177 3076 5227 3108 * * 6714 6523 5511 5843 * * 4133 5349 4994 6928 * 3115 78 0 * * * * * * 4948 0 0 L 79 6277 * * * 1070 * * 1916 * 3354 * * * * * * * 2755 * * 79 27 6750 6792 1000 1000 * * 4901 1000 0 Q 80 6186 6242 4433 1716 * * 6682 4124 2699 5546 4316 5420 * 2894 3294 5894 5631 4928 * * 80 11 * 6989 * * 0 * 4899 0 1000 E 81 * 5236 4875 742 * 6851 * * 5312 3190 3544 * * 4909 4210 * * 6384 * 6259 81 154 4411 4209 1107 900 0 * 4898 1754 1000 I 82 5912 * 6702 4282 * * * 2794 6626 1820 4281 6864 * 4947 6804 * 5503 1468 * * 82 251 2940 5104 605 1546 0 * 4814 2735 1321 G 83 5956 * 3361 2795 * 4029 4846 * 2778 5884 7429 4147 3660 4368 4751 2797 4664 5428 * 4314 83 25 5879 * 0 * * 0 4829 1412 1000 K 84 5142 * 1448 2625 * * 6056 * 2192 5356 * 4240 4823 4560 6876 5132 * 5873 * * 84 0 * * * * * 0 4734 0 1000 G 85 4084 6234 3553 * * 2787 3275 5207 3324 5787 5739 3603 * 5507 2599 3872 5142 4435 * 5757 85 0 * * * * * 0 4734 0 1000 I 86 6993 6201 4713 4874 4745 4470 3469 4137 3789 5340 * 4550 6713 4736 4686 1669 4110 4352 * 5074 86 127 3564 * 0 * 0 * 4734 2033 1000 S 87 6259 * * 5773 5829 3767 * * 2293 4266 6891 2898 3137 2958 3965 2891 * 6062 * 5456 87 57 4685 * 0 * * * 4811 1787 0 Q 88 6280 6538 2809 3221 * * * * 2599 2746 4507 5003 * 2954 3335 5162 4520 4737 * * 88 79 4227 * 1285 762 * * 4811 1939 0 D 89 * * 1668 * * 1769 6724 * 4592 * * 5447 3795 3884 5114 3224 5715 5427 * * 89 321 2326 * 288 2467 * * 4811 2998 0 G 90 4111 7058 3399 4236 * 3184 4997 * 5473 5906 * 4134 3167 3417 * 2294 3066 5567 * * 90 93 4007 * 0 * * * 4811 1875 0 H 91 4593 * 2303 2390 3618 3589 3733 * * 4443 * 2575 * 3678 5898 5910 * * * * 91 115 3898 6673 565 1626 * * 4798 2585 0 H 92 2214 * * * * * 4938 * 5186 * * 3369 934 5737 4140 5122 * * * * 92 0 * * * * * 0 4797 0 1000 F 93 * * * * 2108 * 2379 * * 6353 5826 5388 * * 4112 * 6054 4398 * 1316 93 86 4110 * 1000 1000 0 * 4797 1319 1000 L 94 * * * * * * * * 971 4089 * * * * 1516 * * 3618 * * 94 0 * * * * * * 4798 0 0 V 95 5828 * * * * 5203 * 2339 * 3471 6798 * * * * * * 603 * * 95 0 * * * * * * 4798 0 0 F 96 * * * * 2064 * * * * * * * * * * * * * * 394 96 0 * * * * * * 4782 0 0 R 97 5135 * * 3670 * * * * 2531 5159 * 6267 * 3029 882 6183 * * * * 97 0 * * * * * * 4769 0 0 V 98 * * * * 3705 * * 1867 * 1540 2867 * * * * * * 2572 * * 98 0 * * * * * * 4707 0 0 R 99 * * * * * * * * 3669 * * * * 2231 497 * * * * * 99 0 * * 0 * * * 3712 0 0 //