HHsearch 1.5 NAME c4heaK_ FAM FILE c4heaK_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4heaK_.a3m DATE Sat Feb 16 08:33:55 2013 LENG 95 match states, 95 columns in multiple alignment FILT 101 out of 206 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.4 EVD 0.4880 0.8939 SEQ >ss_dssp CHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSCCCGGGCCCCCC >sa_dssp EEEBEDBEEDDDEADEBCEDDECCDDCCEBCCDCCEADBDCCDBDBEEEDEECEDCBEECEDEBDEDCEECDDECEDDCEEDEECBDEDDDEEEE >ss_pred CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC >ss_conf 97999999999999999998430999999999999999999999974118760899999999999999999999999999738989999981189 >Consensus xxylxxaxxLFxiGlxgxlxrRnlixxlmxxelmxnavxlxxvxxxxxxxpxgqxlxlxxIviaaaexAvxLalxixxyrxxgtxdxdxxxxLkG >c4heaK_ MSYLLTSALLFALGVYGVLTRRTAILVFLSIELMLNAANLSLVGFARAYGLDGQVAALMVIAVAAAEVAVGLGLIVAIFRHRESTAVDDLSELRG >UniRef50_C5CEV2(1-113:114) NADH-ubiquinone oxidoreductase chain 4L n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEV2_KOSOT E=0.0003 s/c=0.41 id=26% cov=100% MNLYILCFALFLVGLYGMLVKRNIVKVILGFGIMGYATNLFLILIAYregarfpiflpgeehelilMVDPLPQALVLTSIVIELGVTALLITLAINIHRK YGTFDLRKIRRLR- >UniRef50_P48930(23-101:101) NADH-ubiquinone oxidoreductase chain 4L n=4 Tax=Eukaryota RepID=NU4LM_CHOCR E=4e-05 s/c=0.62 id=27% cov=83% -----------------FLNQKNILVMLMSLEMMFLSISFNLIFSSiRLDDIIGQIFSLLILTVAAAESSIGLAILVIYYRIRSTITVELMNLMKG >UniRef50_D1YUE6(10-98:99) NADH-ubiquinone oxidoreductase chain 4L n=1 Tax=Cyema atrum RepID=D1YUE6_9TELE E=0.0006 s/c=0.51 id=27% cov=93% -------ILMFSIGLIGLMLHRNyLLTALLCLEAMMLAIYISMALYTSMTENSiFSSTPLMVLSFSACEAAVGLALLVSVYRTHGTTNTLNINMLQ- >UniRef50_Q057W6(8-98:100) NADH-quinone oxidoreductase subunit K n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=NUOK_BUCCC E=1e-06 s/c=0.60 id=22% cov=96% ---FTISIILFFIGIISLLIHKNLIFILVSLEVLINSIILGFILIGKYWkQIDCCVLYIFIVTIATVEVSVMLAIFLRIYQRYHTLDIYKLREI-- >UniRef50_Q1RHS2(6-108:111) Multisubunit Na+/H+ antiporter, MnhC subunit n=3 Tax=Rickettsia RepID=Q1RHS2_RICBR E=0.0001 s/c=0.46 id=19% cov=93% ----FFALILLTSGLFIMLTSHNYIHKVIGLGVFQSSVLVFYLALGKvktgivpimqegvttYTSPLPHVLMLTAIVVGFATLSVALSLIYQIYKHFGTI SENEIS---- >UniRef50_Q8NM50(7-113:163) Multisubunit Na+/H+ antiporter n=2 Tax=Corynebacterium glutamicum RepID=Q8NM50_CORGL E=3e-08 s/c=0.56 id=27% cov=94% ---LLAAGTLISAGVY-LLLDRAMTKMIMGLMLIGNGANLLILVAGgsagsppilgreseiygdKTADPLAQAMILTAIVISMALTAFMLSLAYRQYRYR TEDFIEDDTE--- >UniRef50_C5V9Z7(5-89:149) Na+/H+ antiporter subunit n=2 Tax=Corynebacterium matruchotii RepID=C5V9Z7_9CORY E=0.0003 s/c=0.54 id=22% cov=38% -----LSIAILAGGGVYLVMQRSMLRIIVGMTLFSHATNL------------------------------------------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 1317 * 2611 2302 * * * * * * 2106 * * 1 0 * * * * * * 4009 0 0 S 2 2297 * 4418 * * 4334 * * 4479 4345 * 2410 * 3862 * 2902 2215 * * * 2 0 * * * * * * 4374 0 0 Y 3 * * * * 3044 * * 4123 * 3265 * * * * * * * 4724 * 557 3 0 * * * * * * 4747 0 0 L 4 5933 * * * 2664 5816 5864 3043 * 859 4785 * 6241 6095 * * 6250 6171 * 5214 4 0 * * * * * * 5173 0 0 L 5 3715 6098 * * 2700 * * 2202 * 2070 * * * * * * 3466 2605 * 4473 5 17 * 6397 * * * * 5350 0 0 T 6 3913 6168 * * 3884 6758 * 3380 * 1760 * * * * * 6198 3046 1658 * * 6 0 * * * * 0 * 5374 0 1000 S 7 1326 5842 * * 4920 3190 * 5131 * 6439 5312 6479 * * * 1620 5825 5525 * * 7 25 * 5885 * * * * 5375 0 0 A 8 1728 * * * 3457 3316 * 3016 * 3399 4331 5921 * * * 4383 4514 2940 * * 8 0 * * * * * 0 5425 0 1081 L 9 2473 4585 * * * 3680 * 2407 * 2024 4640 * * * * 6826 4754 2687 6079 6687 9 0 * * * * 0 * 5425 0 1081 L 10 5031 * * * 5479 * * 3322 * 510 3521 * * * * * * 4111 * * 10 0 * * * * * * 5433 0 0 F 11 6283 * * * 501 * * 3552 * 3907 6498 * * * * 5207 6263 3926 * 6393 11 0 * * * * * * 5432 0 0 A 12 2134 3891 * * 3286 2537 * 4706 * 3541 6635 * * * * 2906 4186 3956 5049 6296 12 0 * * * * * * 5444 0 0 L 13 3759 6135 * * 4882 5995 * 1387 * 2260 4557 * * * * 5472 4401 2758 6519 * 13 0 * * * * * * 5465 0 0 G 14 4342 * * * * 92 * * * * * * * * * 6303 * * * * 14 0 * * * * * * 5511 0 0 V 15 3800 * * * 4339 4575 * 2728 * 1119 5215 * * * * 6662 4500 2791 * * 15 0 * * * * * * 5519 0 0 Y 16 3751 * * * 3274 5910 * 3024 * 3433 5600 * * * * * 4906 3684 4432 1279 16 87 * 4098 * * * * 5519 0 0 G 17 3783 4214 * * * 682 * 3948 * 4634 5634 6775 * * * 6410 4118 6538 * 4808 17 27 5737 * 0 * 0 * 5480 1382 2293 V 18 2979 * * * 4337 * * 3210 * 1725 3213 * * * * 5382 * 1830 * * 18 33 5473 * 0 * * * 5526 1494 0 L 19 3860 6180 * * 4780 6850 * 3661 * 1115 2716 * * * * * 4628 2849 * * 19 34 * 5408 * * * * 5526 0 0 T 20 3432 * * * 6828 6165 6923 3691 5997 2557 5337 4053 * 6675 5547 3573 2033 2696 * 6105 20 37 6289 6334 0 * 0 * 5520 1000 1457 R 21 6060 * 6136 5293 * 6445 3983 * 2722 * * 4961 * 3211 1309 2807 6034 * 6836 6906 21 11 7042 * 0 * 0 * 5481 1000 1000 R 22 6485 * * * * * 5259 * 2191 * * * * 4578 654 4842 5596 * * 6529 22 32 5521 * 0 * * * 5525 1680 0 T 23 6203 * 3881 * * 5627 4138 * * 6151 * 702 * 5999 * 2725 5361 5544 * * 23 21 6086 * 0 * * * 5525 1000 0 A 24 3100 * * * 4484 6934 * 2988 * 1350 2440 * * * * 7229 * 3175 * 6565 24 0 * * * * * * 5485 0 0 I 25 5385 * * * 5183 * * 1319 * 1833 6346 * * * * * 4372 2275 * * 25 0 * * * * * * 5485 0 0 L 26 5187 * * * 3887 5014 5414 3337 2290 4388 3508 6969 * * 1926 6139 4728 3667 * 6688 26 0 * * * * * * 5485 0 0 V 27 4036 * * * * * * 2081 3617 3714 2369 * * 6730 5192 6281 4828 1908 * * 27 0 * * * * * * 5485 0 0 F 28 6224 * * * 3358 * * 2480 * 1049 3941 * 5385 * * * * 2956 * 6877 28 10 * 7229 * * * * 5485 0 0 L 29 * * * * 4165 5197 * 2007 * 2216 1559 * * * * * * 3264 6729 * 29 0 * * * * 0 * 5522 0 1000 S 30 3182 3196 * * 6885 1175 * * * * * * * * 5385 1712 * * * * 30 0 * * * * * * 5485 0 0 I 31 4409 * * * 4243 * * 2148 * 1585 3800 * 5385 * * 6322 4492 2408 * * 31 0 * * * * * * 5485 0 0 E 32 5698 * 5459 678 * 4997 * 4850 * 6534 5320 3509 * 5918 * 4140 4712 5557 * 6528 32 0 * * * * * * 5485 0 0 L 33 6077 * * * 5438 * * 1824 * 1131 4362 * 5385 * * * 6536 2840 * * 33 0 * * * * * * 5485 0 0 M 34 4629 6277 * * 4942 * * 2333 * 2843 1141 * * * * 6165 6139 3398 * * 34 0 * * * * * * 5485 0 0 L 35 6362 * 5262 3736 3440 3434 * 4222 * 1398 4923 6346 5385 4067 * 3508 4694 6179 * * 35 13 6795 * 4000 93 * * 5485 1000 0 N 36 4724 * * * * 4400 4650 * 5104 3528 5918 1004 * 4830 * 3161 3862 7054 * 5593 36 19 6229 * 1585 585 * * 5485 1000 0 A 37 1055 * * * * 1583 * * * 6229 * * * * * 2541 * * * * 37 0 * * * * * * 5485 0 0 A 38 2080 4711 * * * * * 2758 * 5222 * * 5762 * * 4543 4166 1205 * * 38 0 * * * * * * 5485 0 0 N 39 4348 * * 6519 4410 5040 5769 2933 * 3357 4854 1146 * * * 5171 6045 4608 * 4468 39 0 * * * * * * 5485 0 0 L 40 6343 * * * 3908 * * 2520 * 875 4455 * * * * 4973 * 3012 * * 40 22 6072 * 1000 1000 * * 5485 1000 0 S 41 2804 * * * 2495 4458 * 6041 * 2554 6524 2465 * * * 3070 4467 4014 6723 5589 41 0 * * * * * * 5481 0 0 L 42 5098 * * * 1599 6351 * 2973 * 1324 4889 * 6794 * * * * 6496 6609 4730 42 19 6288 * 3218 164 * * 5481 1668 0 V 43 2892 5375 * 6794 5347 6467 * 2185 * 2655 6767 * * * * * 6041 1347 * * 43 41 5174 * 3155 172 * * 5481 2128 0 G 44 1531 * * 5985 6825 2992 * 4426 * 3807 * * * * * 2676 2407 4968 * 6819 44 11 7009 * 4170 82 * * 5481 1000 0 F 45 2383 * * * 1573 5967 * 3455 * 3205 4109 * * * * 3740 4720 4907 5565 4995 45 66 4490 * 3938 97 * * 5481 2288 0 A 46 2241 * 5499 * * 1365 * * * 6077 * 4242 * * * 2170 5374 5917 4394 * 46 259 2674 7050 3465 137 * * 5481 3836 0 R 47 3286 * 4606 5072 5366 * 6145 * 3613 6430 * 4298 5184 4108 2249 3147 6040 6802 6213 2338 47 243 2691 * 3689 116 0 * 5485 4002 1000 A 48 3395 5384 * * 3485 6077 4398 4701 * 3461 3353 * 4821 5322 4652 5266 4649 3595 5303 2131 48 111 3760 * 1964 427 * * 5481 3040 0 Y 49 2483 * 5924 6725 4740 7016 3444 4743 6843 2968 * 4937 4374 4738 6484 3531 3874 3855 3878 3986 49 253 2637 * 1630 563 * * 5481 3978 0 G 50 4818 * 1208 5454 6517 2303 6372 * * 6837 * 3107 5103 4847 * 4312 6308 6219 5782 * 50 239 2712 * 2211 351 * * 5481 4059 0 L 51 4552 * 6281 6687 7144 6876 6240 3045 * 3258 4109 4268 1043 6883 * * * 4771 6390 5159 51 61 4594 * 891 1118 * * 5481 2481 0 D 52 5667 * 3025 3523 * 4407 * 4214 6954 2125 5065 6687 6308 4355 6006 4000 2992 2974 * * 52 156 3283 * 1170 848 * * 5481 3454 0 G 53 3971 6482 * * 5077 952 * * * 6669 6271 * 1720 * * 6687 * 4554 * * 53 22 6041 * 1000 1000 * * 5481 1000 0 Q 54 4758 6482 6954 4419 * 6225 3732 6308 * 4813 6517 * 6883 693 5917 4182 * 5644 * 5025 54 0 * * * * * * 5481 0 0 V 55 1431 * * 7131 5360 4714 * 2826 * 4108 4740 6669 * * * 3825 5338 2197 * * 55 0 * * * * * * 5481 0 0 A 56 4166 * * * 2059 * * 3830 * 1264 2826 * * * * * 6076 4460 6975 6876 56 0 * * * * * * 5481 0 0 A 57 2131 6669 * * 5892 * * 2906 * 5146 4604 * 4852 * * 3399 2803 1953 * 6482 57 0 * * * * * * 5481 0 0 L 58 * * * * 3926 * * 2373 * 766 5401 * * * * * * 3125 * 6049 58 0 * * * * * * 5481 0 0 M 59 * * * * 1841 * * 3742 * 3379 4744 * 5384 * * * 1270 4058 * 6138 59 0 * * * * * * 5481 0 0 V 60 1778 6177 6271 * * 4101 * 2167 * 5013 6162 6725 * * * 3279 5859 2146 * * 60 0 * * * * * * 5481 0 0 I 61 * * * * 6484 * * 614 * 3194 3397 * * * * * 4364 3840 * 6308 61 0 * * * * * * 5481 0 0 A 62 2208 6138 * * * 4145 * 5985 * 5917 * * * * * 4300 2707 1069 * * 62 0 * * * * * * 5481 0 0 V 63 4245 * * * 5119 * * 1124 * 2992 6321 * * * * * * 1638 * * 63 0 * * * * * * 5481 0 0 A 64 1030 * 6524 4753 * 1950 * * * * 4728 * * * * 3598 3587 * * * 64 0 * * * * * * 5481 0 0 A 65 1243 * * * 2888 5985 * 5126 * 3940 5317 * * * * 3549 4297 2545 * * 65 0 * * * * * * 5481 0 0 A 66 987 3276 * * * 3192 * 6672 * 5201 * * * * * 3255 4942 3201 * * 66 0 * * * * * * 5481 0 0 E 67 5521 * 6797 779 * 6467 * * * 4072 * * * * * 4950 2875 2766 * * 67 0 * * * * * * 5481 0 0 V 68 2214 * * * * * * 4147 6609 4444 3917 * * 4470 * 3624 1989 2136 * * 68 0 * * * * * * 5481 0 0 A 69 479 6630 * * * 3964 * 6177 * 6361 * * * * * 3188 5274 4420 * * 69 0 * * * * * * 5481 0 0 V 70 6049 * * * 3333 * * 2222 * 2189 4576 * * * * * 5384 1373 * * 70 0 * * * * * * 5481 0 0 G 71 1715 * * * 5005 1343 * 5221 * 3410 3346 * * * * 5632 * 5030 * * 71 0 * * * * * * 5481 0 0 L 72 4978 * * * 4315 * * 3836 * 470 4508 * * * * 5384 * 4110 * * 72 0 * * * * * * 5481 0 0 G 73 735 * * * * 3135 * * * 6049 5985 * 6484 * * 3032 4653 3618 * * 73 0 * * * * * * 5481 0 0 L 74 5537 * * * 4547 6336 * 1637 * 1285 3776 * * * * 6321 * 3239 * * 74 0 * * * * * * 5481 0 0 I 75 2336 5525 * * 3985 6372 * 1985 * 3007 5744 * * * * 6177 3926 2122 * * 75 0 * * * * * * 5481 0 0 V 76 4527 * * * 5507 * * 1822 * 2447 4398 * 5384 * 4798 5757 5293 2095 * 3589 76 0 * * * * * * 5481 0 0 A 77 2479 * * 6723 * 5185 6434 4259 4477 2724 5305 4022 * 5009 1947 4290 5950 4250 6524 5998 77 0 * * * * * * 5481 0 0 I 78 3518 * * * 4348 5426 5400 2467 * 2072 4785 * * 6223 6372 3438 3917 3481 5676 3863 78 0 * * * * * * 5481 0 0 F 79 4786 * * * 2068 * 3393 5917 6361 * * * * 6992 4934 4954 * 4387 5363 1132 79 17 6402 * 1000 1000 * * 5481 1000 0 R 80 5465 * 6403 4807 6019 * 5734 * 2816 * * 4451 * 3635 754 6551 6215 6597 * * 80 0 * * * * * * 5470 0 0 H 81 3364 * 6747 3964 * 5348 3021 4349 3127 4717 4478 3337 * 4314 3021 3758 4145 5725 * 6202 81 0 * * * * * * 5470 0 0 R 82 4179 * * * 3534 5310 3126 6434 2782 4128 6724 * * * 2211 5129 3468 * * 2643 82 0 * * * * * * 5437 0 0 E 83 * * 6696 5347 * 992 5130 6206 3174 * * 3944 6303 4024 3222 4320 6194 * * * 83 16 6461 * 2000 415 * * 5437 1000 0 S 84 4400 * 6233 5097 * * 5552 6860 5602 * * 4115 * * 5401 1717 1169 5093 * * 84 0 * * * * * * 5435 0 0 T 85 7073 * 2878 6802 5228 * * 2150 * 1728 * 6860 * * 6204 6923 3397 2570 * * 85 0 * * * * * * 5435 0 0 A 86 5209 * 1032 3054 5207 * 6860 6017 7119 * 5254 3223 * 6628 3817 3767 6796 * * 6923 86 0 * * * * * * 5435 0 0 V 87 4483 * * 4246 * 6523 * 2383 * 2880 4690 * 4569 * * 4681 2949 1766 5596 * 87 0 * * * * * * 5435 0 0 D 88 5241 * 1076 2285 * 5619 * * 5098 5063 * 4657 * 5504 5334 4192 5005 * * 4560 88 0 * * * * * * 5435 0 0 D 89 3573 * 2770 2172 5624 * * * 2841 5836 6288 4609 * 3466 4087 3557 4607 5250 * 6081 89 0 * * * * * * 5427 0 0 L 90 3308 * 5206 * 3595 6100 6234 2025 * 2024 3496 * * * * 4927 * 3570 6284 4286 90 21 * 6088 * * * * 5406 0 0 S 91 6298 * 3801 4960 * 6659 6446 6559 3617 * * 2378 * 4427 2081 2705 2942 6469 * * 91 0 * * * * 0 * 5414 0 1000 E 92 4084 * 3968 1858 6467 4705 * 5572 5270 3137 4587 4054 5766 5158 3273 3485 4321 * * * 92 0 * * * * * * 5353 0 0 L 93 5563 * * * 5711 * * 4766 * 583 2499 5639 * * * 5793 5442 5847 * * 93 0 * * * * * * 5248 0 0 R 94 * * * 5216 * * * * 1273 * * 4829 * 3741 1229 5473 * * * * 94 0 * * * * * * 5128 0 0 G 95 * * * * * 0 * * * * * * * * * * * * * * 95 0 * * 0 * * * 4727 0 0 //