HHsearch 1.5 NAME c4he8B_ FAM FILE c4he8B_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4he8B_.a3m DATE Sat Feb 16 08:35:35 2013 LENG 92 match states, 92 columns in multiple alignment FILT 101 out of 225 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.3 EVD 0.4601 0.1907 SEQ >ss_dssp CCCTHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHHHHHHHHHCCC >sa_dssp EDDEEEEEDEEEEEDEEEEEDDDEEEEEEEEEEEDDEECCDDBEECDEDBCDECEECEEDCEEDDEECDDDCDDCCEECDEDCCEBEEEDCE >ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCC >ss_conf 97499989999999998887353320457663314899999999999999999999999982123899999999999999999999963889 >Consensus xxxxxxxxxxxxxxxxaxxxgxxpxfxxaRxxFsirFyLvAIlFliFDvEivxLxPwavxxxxxxxxxxxxxxxFixiLxiGlxYeWxkGaL >c4he8B_ MAPIQEYVGTLIYVGVALFIGVAALLVGALKRFPVHFYVVAMLFILFDVEVAFLWPYAVSAGGLGLYGFLGVLAFTLLLFVGFLYEWWKGVM >UniRef50_D1ZZ50(38-111:206) NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Sordaria macrospora RepID=D1ZZ50_SORMA E=2e-07 s/c=0.77 id=26% cov=74% -------------------------FHQTRFPFDSPIAAQAICFVILDIELFTMYPYVGSLGINTLYSLVVILGFMFVISAGFVFELGKGAL >UniRef50_Q6SGN7(45-118:134) NADH-quinone oxidoreductase subunit n=2 Tax=Bacteria RepID=Q6SGN7_9BACT E=5e-09 s/c=0.84 id=33% cov=72% ---------------------------SSQIQMSVEFYLVAIFFVIFDLETVFIFAWAIAFFELGWQGFIAIAAFIFVLGVALIYELSTGAL >UniRef50_Q68SP9(38-112:116) NADH-ubiquinone oxidoreductase chain 3 n=2 Tax=Protostomia RepID=Q68SP9_GRAEB E=2e-05 s/c=0.67 id=28% cov=78% --------------------GFDPMSKN-RLPFSIRFFMLAIIFLIFDLEIVLLLPFLLNKMFLNeVNTIFLMNFFIFILLLGTLYEWKKGAL >UniRef50_A3Q530(55-118:121) NADH-quinone oxidoreductase subunit n=8 Tax=Actinomycetales RepID=A3Q530_MYCSJ E=2e-05 s/c=0.78 id=31% cov=71% ----------------------------ALSRYHVRWYLATLVFLAFDVEMLFMYPWAVVVVEMGATAVIEMFVFLAALLVAVAWAWREGAL >UniRef50_C4XGW7(40-117:130) NADH-quinone oxidoreductase subunit n=3 Tax=Desulfovibrio RepID=C4XGW7_DESMR E=0.0004 s/c=0.59 id=28% cov=71% ---------------------------NSWIKFGINYYFYALIFLAFEVDILYLFPVAAAYASPqGLATTFKLLVFLAVLAAAVVYFMRKGV- >UniRef50_C7FEY0(56-123:143) NADH-ubiquinone oxidoreductase chain 3 n=2 Tax=Saccharomycetales RepID=C7FEY0_DEKBR E=8e-06 s/c=0.75 id=32% cov=67% -------------------------FKQSNNPVPIPFILIALLFLPFDLEISSMLPYIISSYSIGLYGLILFIIFLSILVIGFTFE------ >UniRef50_Q2WGH6(43-117:121) NAD(P)H-quinone oxidoreductase subunit 3 (Fragment) n=2 Tax=Selaginella RepID=Q2WGH6_SELUN E=2e-11 s/c=0.94 id=25% cov=71% ----------------------------TRTQFQIRYYMFASVPVAPDAETVSLHPWATSFRESGVSAFTEASTSVAIPIVGSVYARRKGAL >UniRef50_C3L424(55-139:181) NADH-quinone oxidoreductase subunit n=2 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=C3L424_AMOA5 E=1e-06 s/c=0.64 id=29% cov=72% ---------------------------NAWAPVNSRLYIIGLVFILFELETILLFPWATVWlseethqmigdRAWNLYMAILGTFFILVLGIGLIYAVVK GRL >UniRef50_Q6SL38(33-110:114) NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Armillifer armillatus RepID=Q6SL38_9MAXI E=8e-06 s/c=0.66 id=20% cov=71% ----------------------------TRHPLSLQFFLISLTFLMFDIELTIILPLPLSSSLNLPTSLTSSITLLPLLILGVYYEKSMGLL # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1491 0 0 A 2 1000 * * * 1000 * * * * * * * * * * * * * * * 2 0 * * * * * * 1491 0 0 P 3 * * * * * * * * * * * 1000 1000 * * * * * * * 3 0 * * * * * * 1491 0 0 I 4 * * * * * * * 957 * 2124 1968 * * * * * * * * * 4 0 * * * * * * 1912 0 0 Q 5 * * * * * * * * * * * * * 968 * * 1033 * * * 5 0 * * * * * * 1912 0 0 E 6 * * * 0 * * * * * * * * * * * * * * * * 6 0 * * * * * * 1912 0 0 Y 7 * * * * * * * * * * * * * * * * * * * 0 7 0 * * * * * * 1912 0 0 V 8 * * * * * * * * * 1112 * * * * * * * 896 * * 8 0 * * * * * * 1912 0 0 G 9 * * * * * 896 * * * * * * 1112 * * * * * * * 9 0 * * * * * * 1912 0 0 T 10 * * * * * * * 1112 * * * * * * * * 1827 1968 * * 10 0 * * * * * * 1912 0 0 L 11 2124 * * * * * * * * 376 * * * * * * * * * * 11 0 * * * * * * 1912 0 0 I 12 * * * * * * * 320 * 2329 * * * * * * * * * * 12 0 * * * * * * 2244 0 0 Y 13 * * * * 1499 * * 2086 * * * * * * * * * * * 1283 13 0 * * * * * * 2244 0 0 V 14 * * * * 2523 * * 2329 2086 2476 * * * * * * * 2239 * * 14 0 * * * * * * 2244 0 0 G 15 2329 * * * * 320 * * * * * * * * * * * * * * 15 0 * * * * * * 2244 0 0 V 16 * * * * * * * 648 * * * * * * * 2420 * 2515 * * 16 0 * * * * * * 2458 0 0 A 17 0 * * * * * * * * * * * * * * * * * * * 17 0 * * * * * * 2458 0 0 L 18 * * * * * 1796 * * * 2860 * * * * * * 3026 2844 * 1679 18 0 * * * * * * 2711 0 0 F 19 * * * 1927 973 3026 * * * 3255 * * * * * * * * * * 19 0 * * * * * * 2980 0 0 I 20 * 2909 * 2757 * * * 2170 * 3026 * * * * * 2946 * 3255 * 2841 20 0 * * * * * * 2980 0 0 G 21 * * * 3893 * 407 * * * * * * * * * 2487 * * * * 21 0 * * * * * * 3497 0 0 V 22 * 3893 * * 1918 3741 * 2126 * 3978 4162 * * * * 4286 * 2368 * * 22 0 * * * * * * 3497 0 0 A 23 3131 * 2834 4006 * 3969 * 2398 * 2638 * * * * * 4008 4598 2594 * * 23 0 * * * * * * 3521 0 0 A 24 4303 * * * 4451 * 4140 2669 * * * * 536 * * * * * * * 24 152 * 3323 * * * * 3624 0 0 L 25 * * * * 3614 * * * * 2453 2583 * * * 4053 3065 2943 1949 * * 25 403 4319 2369 4644 59 0 * 3598 1000 1407 L 26 * * * 4990 921 5476 * 5722 * 2030 * * * 4630 * 4110 5023 * * 5316 26 0 * * * * 0 * 4452 0 1847 V 27 * * 5005 3615 5039 1748 3703 * 2898 5836 * 5422 * 4026 4576 3145 5543 3847 * * 27 25 5836 * 4644 59 * * 4528 1000 0 G 28 * * 2749 * * 4117 * * 4434 * * 2064 * 3463 5557 1512 4451 * * * 28 33 6612 6340 4644 59 * * 4794 1000 0 A 29 1071 * * * * 6509 * * * 5751 5678 5277 5253 6317 * 2214 2507 5728 * * 29 0 * * * * 0 * 4944 0 1000 L 30 * * * * * * 4264 * 5297 4627 * 4864 5089 6338 485 5817 * 6024 4102 * 30 0 * * * * * * 4959 0 0 K 31 4359 * * 4328 4352 4534 5909 2626 4649 3291 3952 3844 5056 5347 5223 4101 3059 3401 * * 31 10 * 7137 * * * * 4964 0 0 R 32 4940 * * 5534 * 4689 * 5826 3871 * * 6272 1345 3552 1980 4881 6135 5174 * * 32 0 * * * * 0 * 5046 0 1000 F 33 * * * * 431 * * 4818 * 3969 5248 * * * * * * 4219 6346 3901 33 0 * * * * * * 4976 0 0 P 34 6313 * 3236 * * 5414 5219 * 5652 * * 2768 3308 4612 5776 1010 * * * 7048 34 0 * * * * * * 4964 0 0 V 35 3901 * * * 4914 * * 1806 * 2379 4312 * 5579 6658 * 4456 5119 1909 * * 35 0 * * * * * * 4980 0 0 H 36 4609 * * 6135 * 4354 5295 6358 2933 * * 5166 4053 2932 1129 4854 * 5934 * * 36 0 * * * * * * 4980 0 0 F 37 * * * * 628 * 6203 5362 * 6159 * * * * * * * * 6293 1795 37 0 * * * * * * 4980 0 0 Y 38 4863 * * * 1346 * 6703 5446 * * * * * * * 5355 * * * 957 38 0 * * * * * * 4980 0 0 V 39 5362 * * * 5453 6183 * 3936 * 693 3167 * 6584 * 6358 * 6897 3744 * 4706 39 0 * * * * * * 4980 0 0 V 40 6293 * * * 3666 * * 1750 * 3179 6642 * * 5362 * * 5221 1519 * 3464 40 0 * * * * * * 4980 0 0 A 41 267 * * * * 4462 * * * 6223 6183 * * * * 4058 5270 6605 * * 41 0 * * * * * * 4980 0 0 M 42 * * * * * * * 1142 * 2013 3156 * * * * 5156 6604 2881 * 6282 42 0 * * * * * * 4980 0 0 L 43 5278 5362 * * 4183 * * 2192 * 1162 4535 * * * * 5448 4835 2964 * * 43 0 * * * * * * 4980 0 0 F 44 * * * * 135 * * * * 5030 * * 5156 * * * * * * 5022 44 0 * * * * * * 4980 0 0 I 45 * * * * 6458 * * 2158 * 987 5185 * * * * * * 2104 * * 45 0 * * * * * * 4980 0 0 L 46 3177 * * * * * * 1400 * 2269 4420 * 5446 * * * * 2098 * * 46 0 * * * * * * 4980 0 0 F 47 * * * * 106 * * 6453 * 4986 * * 5156 * * * * * * * 47 0 * * * * * * 4980 0 0 D 48 5097 * 180 3504 * * * * * * * * * * * * * * * * 48 0 * * * * * * 4980 0 0 V 49 4677 * * * 5203 * * 2059 * 1985 4804 * * * * * * 1303 * * 49 0 * * * * * * 4980 0 0 E 50 * * 4461 87 * * * * * 6253 * * * * * * * * * * 50 0 * * * * * * 4980 0 0 V 51 2670 * * * * 6517 * 1567 * 3154 4242 * * * * 5223 3060 2454 * * 51 0 * * * * * * 4980 0 0 A 52 2076 * * * 5362 * * 2643 * 2868 6135 * * * * 4434 4218 1611 * * 52 0 * * * * * * 4980 0 0 F 53 * * * * 1568 * * 3331 * 1611 5929 * * * * 4636 4833 6334 * 2923 53 0 * * * * * * 4980 0 0 L 54 * * * * 4114 * * 2686 * 591 3296 * * * * * 5555 * * * 54 0 * * * * * * 4980 0 0 W 55 * * * * 1547 * 5156 3923 * 2082 4336 * * * * * * 6140 5974 2011 55 15 6603 * 1000 1000 * * 4980 1000 0 P 56 3961 * * * 6119 * * 6584 * 6381 * * 226 * * 5396 5643 * * * 56 32 6243 6851 2807 222 * * 4980 1000 0 Y 57 6757 6182 * * 4194 * * 4067 * 3319 5154 * * * * 5228 5792 3759 1043 2940 57 15 6583 * 1000 1000 0 * 4972 1000 1000 A 58 1078 5572 * * 4801 4935 * 3655 * 4891 6855 * 3069 * * 3843 5311 3310 * * 58 0 * * * * * * 4980 0 0 V 59 4121 * * 6253 4955 5362 * 3053 6673 2885 3540 * 4989 5929 * 5582 3608 1562 4981 * 59 11 7092 * 0 * * * 4980 1000 0 S 60 2725 5759 5904 6453 * 4574 * 3265 5967 4773 5232 4332 * 5150 * 1921 5011 2548 5203 7391 60 45 5472 6889 1484 638 * * 4980 1451 0 A 61 3794 * 6915 * 2096 5647 6609 3338 4938 2525 4383 * * * * 3471 6590 4634 5041 2931 61 85 4128 * 2031 405 * 0 4977 2505 1000 G 62 4786 6678 4898 6502 6118 2764 4618 6054 2943 3711 5770 3062 5584 4410 2858 4489 6790 4851 5512 4982 62 9 7387 * 4000 93 0 * 4977 1000 1000 G 63 4395 * 3738 2474 4446 3733 * 5362 4368 3467 5540 3895 5820 4443 4497 3153 4441 5726 * 4672 63 60 4622 * 2567 267 * * 4980 2430 0 L 64 5303 * 6183 * 4053 4567 * 3074 6703 1941 3365 4382 5979 * * 3027 4269 3608 5072 5470 64 99 3919 * 1194 829 * * 4980 2625 0 G 65 3613 * 5422 5021 * 1465 * 7075 4471 6098 5143 2953 3975 * * 2965 3982 6870 6184 * 65 75 4299 * 3061 184 * * 4980 2475 0 L 66 4333 * * 6851 3958 5419 * 3591 5498 2185 4471 4498 4157 7038 5648 4005 3974 3310 2953 * 66 14 6673 * 0 * * * 4980 1000 0 Y 67 4670 * * 4613 2873 4414 6024 4329 * 3287 4365 5770 4449 5496 4732 3753 3395 4174 5000 2830 67 36 6125 6614 0 * * * 4980 1422 0 G 68 2370 * 5932 * 5292 1870 * 4113 5831 4831 4746 * 6177 5450 * 3020 3578 3996 6659 5202 68 32 5531 * 4069 89 * 0 4974 1926 1000 F 69 6153 6799 * * 1818 5364 * 4110 6820 1992 4302 * * * * 7085 5959 2784 3910 3942 69 56 4718 * 0 * 0 * 4974 2072 1000 L 70 4351 6835 * * 3472 4240 * 2210 * 3480 4515 6119 * * * * 3199 2276 3232 6203 70 30 5592 * 492 1791 * * 4980 1454 0 G 71 3023 6223 5252 1897 6253 5819 6862 3188 4625 4038 4437 * 5052 * 7048 3612 3717 4577 5777 5929 71 13 6789 * 1000 1000 * * 4980 1000 0 V 72 3319 5433 * * 3561 4043 * 3035 * 3279 2054 * * * * 3764 3941 3148 6184 * 72 22 6046 * 0 * * * 4980 1399 0 L 73 4508 6050 * * 2839 4028 * 3253 * 1850 3868 5860 * * * 3660 3720 3519 5929 6224 73 0 * * * * * * 4980 0 0 A 74 3928 6358 5572 6253 3271 3641 * 2259 * 2325 4748 * * * * 6223 3417 2722 * * 74 0 * * * * * * 4980 0 0 F 75 * * * * 268 6253 * 4391 * 4184 * * * * * 5156 * 5898 * 6827 75 0 * * * * * * 4980 0 0 T 76 7048 * * * 3746 * * 1912 * 1568 3622 * * * * 6372 4291 2632 * 6789 76 0 * * * * * * 4980 0 0 L 77 2268 * * * 3408 3495 * 2847 * 1936 4484 * 6098 * * 6360 4396 3470 * * 77 11 7091 * 0 * * * 4980 1000 0 L 78 4698 6789 6832 5572 5494 * * 1204 * 2617 5620 * * * * 5598 4685 2162 * * 78 35 5377 * 0 * * * 4980 1519 0 L 79 * * * * 5885 6184 * 4143 * 270 * * 5156 * * * 6603 4466 * * 79 0 * * * * * * 4980 0 0 F 80 3555 * * 6952 3412 4621 * 2678 * 1915 6089 6889 * * * 4032 3198 2872 5568 * 80 0 * * * * * * 4980 0 0 V 81 3103 * * 6804 5030 4588 * 2080 * 2053 5597 * * * * 5523 6897 2163 4674 6418 81 35 * 5379 * * * * 4980 0 0 G 82 2833 * * * * 320 * 6162 * * * * * * * 6130 6184 5902 * * 82 0 * * * * 0 * 4947 0 1486 F 83 * * 6595 * 2137 6247 * 4471 * 1285 6605 * * * * 4603 4989 3281 5363 3581 83 0 * * * * * * 4980 0 0 L 84 2528 * * * 3177 6184 * 2134 * 2816 * * * * * * 5558 2202 6119 3649 84 0 * * * * * * 4980 0 0 Y 85 * * * * 4548 * 3050 6372 * 6182 6513 * * * * * * 5517 3982 485 85 19 6228 * 0 * * * 4980 1000 0 E 86 1999 * 6772 920 5970 * * 5513 * 4095 6680 * * * * * * 3234 * * 86 0 * * * * * * 4966 0 0 W 87 * * * * 5954 * * 3880 6051 3386 5075 * * * 5086 * * 4131 590 5339 87 0 * * * * * * 4944 0 0 W 88 5129 * * 6215 5597 3824 * 5735 1867 4478 6226 3181 * 5059 2327 3348 7143 4664 6170 5842 88 0 * * * * * * 4937 0 0 K 89 * * 6263 2374 * * 6196 7062 1285 6745 4192 3752 * 3542 4267 6012 4465 6215 6353 * 89 0 * * * * * * 4937 0 0 G 90 * * * * * 137 * * 5152 * * 4370 * * 6161 * * * * * 90 0 * * * * * * 4937 0 0 V 91 1012 * 5443 * * 3194 * 4174 * 6051 5387 * * * 6044 3215 6834 2863 * 6868 91 0 * * * * * * 4833 0 0 M 92 * * * * * * * 4809 * 93 5240 * * * * * * * * * 92 0 * * 0 * * * 4810 0 0 //