HHsearch 1.5 NAME c4g7xB_ FAM FILE c4g7xB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4g7xB_.a3m DATE Sat Sep 1 14:18:21 2012 LENG 102 match states, 102 columns in multiple alignment FILT 107 out of 417 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.8 EVD 0.4414 0.4674 SEQ >ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCGGGTTCCEEEEEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHTCCCEECCTTCHHHHHHHTEEEEEE CC >sa_dssp EEEEDEEDCEEBCEDBBEDACDCADEDBEEDECAEEDEADABADBEDDEEBADDDDCDDDDECEEABECAEEAAEDBEDADCBDECEDACEEADEBEBDA CE >ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCEEEE CC >ss_conf 9268889999999999999999999635898544797799999984899586678742689988999999999997189988797245899704316785 09 >Consensus xxxaxxxxxxsexxxYxaxIxxxIxxxwxxpxxxxgxxxxvxixlxxxGxvxxvxxixxsSGxxxxdxaaxxAVxxaxpxPxppxxxxvxxxxrxxxlxF xP >c4g7xB_ NNAARQQFVTSEVGRYGAIYTQLIRQNLLVEDSFRGKQCRVNLKLIPTGTGALLGSLTVLDGDSRLCAATKRAVAQVNSFPLPKDQPDVVEKLKNINLTV AP >UniRef50_C0A9L6(254-346:351) Protein TolA n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A9L6_9BACT E=8e-06 s/c=0.55 id=19% cov=91% --TALTRAEQSILDSYFAYVKQQIRNAHEKPPGLSDsLSTDVAFMLSASGNVSQV-RIVRTSGSNEFDDSVVAAVKRVRLRPRPDNKSEL------LSLT FK- >UniRef50_Q74CH4(130-216:237) TonB-dependent receptor, putative n=1 Tax=Geobacter sulfurreducens RepID=Q74CH4_GEOSL E=1e-05 s/c=0.58 id=15% cov=80% ---AEGESLRSDVREYYFTLLETINERWWTVANASGMdlgrsEAMFTIVMKKSGEMVDVQLV-KSTGSPAYDRLILQAIQAANPLPPLPD---------- ------- >UniRef50_Q1QQ84(129-216:225) TonB-like n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QQ84_NITHX E=2e-10 s/c=0.76 id=19% cov=86% ---AEQDLEADHLRKYVKRLTKKVQAHLVYPNEGRKGNATVSFTLTPDGQVKpGTLAIAVSSGQPKLDASALQTIRACAPFHPPPEELNVA--------- --- >UniRef50_B3CRT4(316-407:409) Putative uncharacterized protein n=2 Tax=Orientia tsutsugamushi RepID=B3CRT4_ORITI E=2e-05 s/c=0.55 id=18% cov=65% ---------------YTDTIKYQIQAHWNHTIGFiPGISTVLMVNLTLDGTIENITDISHncPNNNTTVCnvfiQNVKRAIWAASPF------------- --------- >UniRef50_D1P2H0(45-119:133) TolA colicin import membrane protein n=1 Tax=Providencia rustigianii DSM 4541 RepID=D1P2H0_9ENTR E=1e-06 s/c=0.72 id=19% cov=72% -------------DIYASSVQKSIQSRFYDIDLYKGKKCKIKVTLDDDGKLISAIVHDKKSnNDKKLCIRGIELIENTQFLPTPED-------------- --- >UniRef50_A5VZV1(260-367:372) Tol-Pal system, TolA n=9 Tax=Pseudomonas RepID=A5VZV1_PSEP1 E=6e-12 s/c=0.67 id=18% cov=100% DTTERQQALADEqgdqvAGDFDDLIRMRAAEGWARPPSARkGMTVVLQINMLPDGTITSVSV-ARSSGDGPYDSSAVAAVKNIGRLTEMQGmKPSDFNQY RSFKMTFTP >UniRef50_Q31H80(242-341:341) TolA protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31H80_THICR E=2e-10 s/c=0.67 id=19% cov=97% -QAAKQKEMLSLRETYISSIAASVKDNWRTAAKVSEKaECVVSITQTPKGMISSVKVEKcNKFANEQFKKDAEKAVYRAEPLPQPP-IKELFE--RNIKF IFNP >UniRef50_D0YFM3(52-143:143) Putative uncharacterized protein n=1 Tax=Klebsiella variicola At-22 RepID=D0YFM3_KLEVA E=4e-08 s/c=0.64 id=22% cov=91% -----GKATQDQLMRYAFTLREAVMVQLPNSARYQGKICSVRLSLNRSAKLTGL---QQEGGDPAFCAVVTDAVLRTTFPPFASEG--VYQIFNHPLLDF KP >UniRef50_C6XF70(179-268:271) Signal peptide protein n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XF70_LIBAP E=3e-05 s/c=0.55 id=20% cov=81% -----------------AIVRNRVIANWNIPSDFKRfkkLRVKMHFQLNQKGFVLGKINVDVVGGTelvrRMLRENARKAVIKSQAFRLSPS---TYKSW RNITLFFVP # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * N 1 * * 1014 * * * * * * * * 986 * * * * * * * * 1 0 * * * * * * 1758 0 0 N 2 * * 1770 2719 * * * * * * * 1417 * 3365 * * 3583 * * * 2 0 * * * * * * 4467 0 0 A 3 1259 * 4057 * * * * * 4224 4248 * 4298 * 4159 * * 1693 * * * 3 0 * * * * * * 5195 0 0 A 4 689 * * 3748 4397 4468 * * 4569 * 4478 * * 4860 * * 5211 3959 * * 4 0 * * * * * * 5645 0 0 R 5 * * * 2777 * 4974 * * 2242 3995 * * 4854 3243 1413 4948 * * * * 5 0 * * * * * * 5831 0 0 Q 6 5421 * * 4830 * 2116 5124 * 5180 4865 * 5269 * 1212 3331 * 3984 * * * 6 0 * * * * * * 6103 0 0 Q 7 4234 * 4928 2518 * 3287 * * 3138 * * 6536 * 1967 3476 4257 3125 * * * 7 0 * * * * * * 6141 0 0 F 8 3314 * 3836 2215 4922 * * * 4927 3698 * * * 1734 3623 4123 4975 * * * 8 0 * * * * * * 6162 0 0 V 9 3258 * * 3566 * * * 2084 5586 2396 3894 * * 5487 * 5410 3326 2721 * * 9 41 5142 * 1000 1000 * * 6180 1000 0 T 10 2349 * 4458 4102 * 3889 * 5366 * 2620 3102 5971 * 2989 3765 4408 3910 * * * 10 0 * * * * * * 6393 0 0 S 11 3798 * 2938 4225 * * 5288 * * * * 3944 * 4839 4281 1469 2640 4458 * * 11 31 5545 * 2000 415 * * 6438 1000 0 E 12 3612 * 3105 952 * * 5394 5181 * 3613 * * 5346 3842 * 4567 6018 * * * 12 98 4814 5068 1828 477 * * 6531 1595 0 V 13 3627 * * 7724 * 4854 * 2748 5026 2481 4800 * * 5797 3171 * 5200 1693 * 5656 13 55 4747 * 2517 277 * 0 6691 1574 1845 G 14 2988 * 2614 2053 * 3281 5543 * 4690 * 4768 3903 5896 3914 3640 4770 8349 * * * 14 27 5767 * 0 * * 0 6815 1000 1845 R 15 3432 * 5170 4200 * 5641 * 5076 2883 3839 5869 3955 5643 3807 2478 2456 5585 6118 * * 15 19 * 6290 * * 0 * 6818 0 1845 Y 16 * * * * 3977 * 6436 * * 5401 6253 * * * * * * * 3842 289 16 15 6562 * 0 * * 0 7076 1000 1000 G 17 2109 * 5337 7662 6263 3986 * 3966 3579 4392 6637 6444 * 3286 4222 4408 2855 3752 * 5060 17 0 * * * * * 0 7076 0 1000 A 18 1212 * 3694 5382 4435 3913 6537 7643 5314 5994 6454 4514 * 4542 * 2928 6539 4120 * * 18 0 * * * * * 0 7137 0 1000 I 19 3353 * 6231 4271 * 6169 * 3642 3619 1930 6484 * * 2876 3476 4161 4018 * * 4493 19 12 6869 * 0 * 0 * 7099 1000 1000 Y 20 6039 * * * 6302 * * 1240 * 2416 5581 * * * * * * 1728 6250 5298 20 0 * * * * * * 7213 0 0 T 21 4018 * 6711 6795 6524 5749 * 4978 2388 4921 5129 * * 2589 2024 4189 4451 3749 * 5726 21 0 * * * * * * 7209 0 0 Q 22 2271 * 3826 3462 * 3823 * * 3817 * 6428 4565 5728 2696 3732 2940 5279 * * 4986 22 0 * * * * * * 7209 0 0 L 23 2174 6341 * 5106 * * 4057 5127 2772 4063 4276 6360 6171 3964 2269 4638 4592 6475 * * 23 0 * * * * * * 7209 0 0 I 24 6430 6875 * * 5537 * * 1030 * 3112 5623 * * * * * * 1588 * * 24 0 * * * * * * 7214 0 0 R 25 4527 * 6638 3213 6563 5296 6733 5381 2420 5031 5179 3538 * 2086 2982 5225 5165 5550 * * 25 0 * * * * * * 7214 0 0 Q 26 3068 * 4926 3344 * 5995 * * 4186 * * 4489 4386 2898 1704 2962 * 5890 * * 26 18 6316 * 1000 1000 * * 7214 1000 0 N 27 3561 * * 6158 6465 6430 3109 6563 3540 5196 * 1622 * 3569 2545 8078 6565 5816 * 5266 27 0 * * * * * * 7214 0 0 L 28 6152 * * * 4048 * 6394 4135 3666 2797 4242 * * * * * 5943 4275 1082 4607 28 43 5568 6886 0 * * * 7214 1664 0 L 29 3983 * 6658 5178 5357 6775 4857 4049 5795 4206 4967 3021 4351 3581 2396 4438 5347 3514 5323 4728 29 15 * 6554 * * 0 * 7213 0 1000 V 30 4635 * 4452 6794 3555 5509 6252 3789 4696 5133 5310 5004 4290 5197 3114 6370 4389 2697 6605 2548 30 18 6341 * 0 * * 0 7201 1000 1000 E 31 3811 * 4450 4633 * 6370 * 6238 * 6822 * 3858 905 * 6372 4084 3509 6232 5647 6215 31 49 4917 * 1067 936 0 * 7201 2114 1000 D 32 2849 * 2859 3710 7081 4670 * 4822 4981 6699 * 6333 2169 3781 4192 3345 5004 5813 * 6146 32 40 5206 * 659 1448 * * 7214 2120 0 S 33 3226 * 4594 4914 * 2896 * 4779 3892 5551 6540 3422 6146 4044 4120 2344 3418 4954 * * 33 53 5825 5788 0 * * * 7214 2013 0 F 34 2327 * 5282 6344 3269 3806 * 3438 4865 3478 4069 * 5294 5285 * 4562 4610 4087 6617 3210 34 118 3676 * 1166 851 986 1014 7217 3848 1636 R 35 4027 * 3664 5562 * 5004 6231 6440 2735 7588 * 5179 4457 4368 1709 2891 4670 5286 * * 35 251 2716 7088 1219 810 0 * 7226 4441 1000 G 36 5113 * 3765 3253 * 1026 6625 * 6339 * * 3565 * 4525 3852 3810 6557 * * * 36 157 3743 5132 1115 893 0 * 7240 3716 1000 K 37 6563 * * 4947 * 3204 6648 5531 2466 2898 3121 3633 5015 3298 3594 5598 5247 6444 6266 5685 37 362 2170 * 1442 662 0 * 7196 5336 2184 Q 38 4268 * 6169 2744 6952 5282 * 5487 2742 5871 * 6379 5964 3863 2820 2792 2893 4479 * * 38 38 5272 * 1196 827 * * 7219 2139 0 C 39 1959 2045 * * * 4771 * 6250 * 4124 * * * * * * 3094 1857 * * 39 29 5651 * 600 1555 * * 7219 2085 0 R 40 * * 4928 3698 6287 6383 * 3849 3774 5028 5713 * * 3874 2509 3530 2914 2505 * 4886 40 0 * * * * * * 7308 0 0 V 41 5275 6995 * * 4674 * * 2441 * 2151 4487 * * * 6652 * * 1110 * * 41 0 * * * * * * 7308 0 0 N 42 4407 * 7256 3417 6916 * 4341 * 3412 3301 6354 4637 * 3362 2476 2647 3942 4759 6887 * 42 0 * * * * * * 7308 0 0 L 43 * * * * 2006 * * 1675 * 3360 4775 * * * * * * 1787 * 6137 43 0 * * * * * * 7308 0 0 K 44 5580 7013 6855 4307 4553 6491 3781 6669 3637 4979 6473 5080 * 3951 2856 3465 1858 4483 6787 * 44 28 * 5721 * * * * 7308 0 0 L 45 * 5628 * * 4443 * * 2171 * 1447 3793 * * 3993 * * 6011 2452 6404 * 45 0 * * * * * 0 7220 0 1000 I 46 3116 * 2504 4968 * 3925 5900 4754 6289 2937 6778 3784 6203 5450 5680 2579 3923 5548 * 5562 46 0 * * * * * 0 7220 0 1000 P 47 3226 * 4977 4970 * 5475 * 5231 4297 5023 * * 1414 4590 2522 3703 6497 5646 * * 47 0 * * * * 0 * 7220 0 1000 T 48 5106 * 1692 6841 * 3156 5806 * 5145 * * 3118 * 4450 5325 2543 2952 7013 * * 48 36 6411 6253 0 * * * 7308 1000 0 G 49 5123 * * * * 98 * * * 5717 * 5793 * * * * * * * * 49 31 * 5568 * * * 0 7277 0 1000 T 50 4363 * 4928 2772 6014 4161 5756 * 3254 5988 5332 3696 * 3123 3696 3142 2887 6656 * 6729 50 14 * 6648 * * * 0 7118 0 2115 G 51 * * 5595 * 6370 5171 * 1806 * 2170 6308 * 6748 * 6390 * * 1331 * * 51 60 6176 5218 1000 1000 1946 434 6989 1000 2512 A 52 3540 * * 3212 * 4122 * 3124 4510 2661 4498 * * 4600 3920 3686 3201 3411 * * 52 34 6312 6569 0 * 510 1748 7100 1000 3331 L 53 4748 * 2986 3653 6406 2723 6288 * 5768 4670 6403 2872 * 3744 5189 2182 5686 6631 6610 6287 53 231 6570 2864 1000 1000 570 1615 7033 1000 2155 L 54 2339 * 4898 * * 6345 6172 2895 5885 3154 * 6186 * 5639 5594 * 5425 1318 * * 54 321 * 2327 * * 0 * 6934 0 4712 G 55 5639 * * 4024 6330 6162 6289 3720 2361 3663 6811 5524 3865 3251 5592 4268 3313 4734 5551 3421 55 135 6002 3768 2000 415 120 3647 7013 1000 4740 S 56 4103 * 4338 * 5513 4597 4757 3940 3864 4365 6234 4304 * 4104 2873 3462 6179 2138 * 5677 56 72 * 4353 * * 710 1363 6993 0 3835 L 57 5407 * * 6077 4666 * 6017 1873 * 2213 * 5239 * 6814 * 4987 5036 1699 * 6294 57 200 * 2946 * * 947 1055 7030 0 3703 T 58 3501 * 2853 2494 * 5387 * 5496 3932 4116 6605 6233 5315 4183 4877 3844 3209 3174 * * 58 95 5935 4397 0 * 503 1764 6976 1000 4914 V 59 4659 * 4761 5349 * 5460 6248 * 2359 * * 4309 * 3655 1952 3021 4095 3351 * * 59 117 6248 3949 1000 1000 1121 888 7107 1000 3629 L 60 4494 4105 * 4785 * 3655 * 6305 4047 4782 * 6052 3611 * 5938 1075 4932 4993 * 5632 60 63 6693 4916 1000 1000 107 3810 7136 1000 4086 D 61 6777 6500 6377 * 6103 3339 * * * * * 4198 5208 6434 * 539 3773 * * * 61 18 6304 * 0 * 958 1043 7042 1000 2489 G 62 6120 * * 6589 * 306 * * 6272 6642 * 4608 4588 * 6819 4682 * * * 6257 62 28 5723 * 1802 488 0 * 7154 1579 1543 D 63 5966 * 1648 * 5773 * 4688 5822 6303 5146 * 2144 5738 4802 5047 2909 6066 5205 * 3992 63 37 5299 * 2283 332 * * 7058 1709 0 S 64 3087 * 4702 3497 * 3858 * 6838 2884 5815 * 4519 2351 4533 3842 3047 5509 6486 * 5821 64 13 6825 * 1585 585 * * 7058 1000 0 R 65 1642 * 3176 4466 4959 6056 * 5754 4229 3801 4517 6258 5789 4889 5075 3740 5059 4012 * 5158 65 0 * * * * * * 7058 0 0 L 66 5375 * * * 1557 6228 * 3913 * 1771 5242 * * * * 7017 * 3722 4881 3066 66 11 7012 * 1585 585 * * 7058 1000 0 C 67 4849 2479 716 5527 * * 6925 * 4322 * * 4508 * * 4607 * 6357 * * * 67 18 6365 * 2000 415 * * 7058 1000 0 A 68 3083 * 2550 2775 * * 6339 5072 4036 * * 4130 * 2851 2816 3269 5596 * * * 68 0 * * * * * * 7058 0 0 A 69 1197 * 6148 4467 * * * 6703 6232 5661 * 4416 * 6624 4853 1699 5115 6094 * 5730 69 0 * * * * * * 7058 0 0 T 70 1162 6895 * * * 4293 * 3842 * 3738 * * * * * 5299 5564 1725 * * 70 0 * * * * * * 7058 0 0 K 71 * * 6319 2902 * * 6493 3391 3231 1843 4158 5485 * 4567 4537 6091 4536 2830 * * 71 0 * * * * * * 7058 0 0 R 72 2625 * 4353 3479 * * 5528 6451 3125 * 6676 4477 * 3886 1754 3404 4705 * * * 72 0 * * * * * * 7058 0 0 A 73 278 * * * * 5730 * 6872 * 5594 5464 * * 6521 * 5509 4100 6232 * * 73 18 * 6320 * * * * 7058 0 0 V 74 4171 * * * * * * 1546 * 3706 5438 * * * * * 5139 1077 * * 74 0 * * * * 0 * 7029 0 1000 A 75 3784 * 4588 3233 * 5349 5767 6053 3155 3796 6810 4118 * 3594 2464 4349 4654 * 4087 4081 75 44 6232 5873 1585 585 * * 7058 1000 0 Q 76 2791 * 4110 5647 * 6435 5436 * 2196 4924 * 4645 * 3672 1730 4079 6286 * * * 76 0 * * * * 979 1021 7059 0 1703 V 77 1080 5133 * * * 6613 6331 4639 * 5166 5588 * * * * 2473 3074 3500 * * 77 27 * 5751 * * 0 * 7062 0 1000 N 78 2381 * 3898 4305 * 2750 * 6349 4688 * * 4940 6467 3535 3192 2148 6010 6628 * * 78 28 6771 6678 0 * 962 1039 7056 1000 1558 S 79 4782 * 6859 * 4289 5703 * * 3435 5531 5758 5041 1004 5426 3810 4096 4707 4973 * * 79 0 * * * * 0 * 7056 0 1738 F 80 * 6472 * * 1573 * * 4288 * 1421 5091 * 3508 * 6377 5324 * 5068 * 4511 80 62 5754 5420 0 * * * 7058 1605 0 P 81 5476 * * 5483 * 6197 6255 * * 5579 * 6648 282 6733 5370 5902 5332 * * * 81 43 5757 6560 0 * 505 1758 7037 1000 2129 L 82 3048 * 5906 3939 4193 * 5860 4671 3659 3578 4941 6099 2542 5068 3834 6266 4806 2684 * * 82 55 6109 5456 0 * * 0 6895 1000 1615 P 83 3585 * 5217 * * * * * * 3090 5175 * 637 * 6085 3821 * 5960 * * 83 71 * 4385 * * 984 1016 6878 0 2438 K 84 3785 * 3476 4835 6215 * * * 3581 * * 5844 856 5058 6219 3891 5331 * * * 84 78 * 4241 * * 1242 793 6863 0 2887 D 85 4017 * 1564 3065 5672 4898 * 6343 4945 * * 2894 4552 4570 * 3161 5975 4813 * * 85 315 4199 2817 603 1549 1695 533 6727 2164 3253 Q 86 5490 * 3018 4685 6082 1922 * 3964 3172 * 5501 4133 5988 3175 4251 5515 6614 3802 * * 86 353 * 2204 * * 719 1350 6568 0 4578 P 87 1896 5331 4609 * 5702 4691 * * 4986 4554 * * 1420 6188 5387 4075 * 4806 * 5207 87 0 * * * * 886 1124 6267 0 5323 D 88 2387 * 3305 1977 5561 * * * * 3651 * 4634 4048 4486 6037 3150 4613 4690 * * 88 94 * 3986 * * 1616 569 6517 0 3651 V 89 5978 * 5201 * 2944 5118 * 3569 5867 3168 5653 * 5448 * 4713 * 3500 1336 * 5647 89 66 * 4477 * * 951 1051 6654 0 3525 V 90 3370 * * 4506 1837 6163 * * * 5438 5008 3663 * 5609 5661 4288 * 4566 * 1744 90 0 * * * * 1010 990 6515 0 3077 E 91 3931 * 3738 2117 * 5128 * * 2380 * * 3277 5907 4996 3823 3432 3872 5297 * * 91 70 * 4393 * * 1491 635 6577 0 2120 K 92 5758 5366 3739 2372 4149 5759 5419 3136 3153 3849 5563 6047 * 3239 3972 4499 5253 5707 * * 92 63 5579 5522 0 * * 0 6553 1000 2565 L 93 5077 * * * 2000 * * 4847 * 2473 3765 5575 3970 * * * 4687 2898 3505 3537 93 0 * * * * 747 1307 6526 0 2846 K 94 * * * * * * * * 2069 4180 * 4911 5792 3713 788 * * * * * 94 64 5856 5259 0 * 984 1016 6577 1000 1600 N 95 * * 3418 2263 * 5523 4904 * 3300 * * 2604 4498 3726 4530 3368 3619 4814 * * 95 0 * * * * 0 * 6492 0 1656 I 96 4876 * * 5122 2272 5626 * 1512 * 2748 4903 5701 4921 * 5493 * * 3664 5395 * 96 0 * * * * * * 6462 0 0 N 97 5403 * 5473 * * 5137 * 4807 2885 4905 * 1995 4123 * 5735 3718 2102 3557 * * 97 0 * * * * * * 6435 0 0 L 98 * * * * 1998 * * 2316 * 1164 5119 * * * * * * 4309 * 5410 98 0 * * * * * * 6408 0 0 T 99 * * 4122 3793 5036 * * 3834 2888 * * 3130 * * 3879 3362 1897 3528 * * 99 0 * * * * * * 6351 0 0 V 100 * * * * 434 * 5492 5344 * 3519 5460 * * * * * * 3277 * * 100 0 * * * * * * 6326 0 0 A 101 2521 * 2934 4217 * * 5113 * 3338 * * 3071 * 5311 1955 * 3749 4757 * * 101 0 * * * * * * 6179 0 0 P 102 * * * * * * * * * * * * 0 * * * * * * * 102 0 * * 0 * * * 5839 0 0 //