HHsearch 1.5 NAME c4fxwB_ FAM FILE c4fxwB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4fxwB_.a3m DATE Tue Jan 22 09:02:56 2013 LENG 99 match states, 99 columns in multiple alignment FILT 62 out of 66 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.6 EVD 0.4240 0.1887 SEQ >ss_dssp CCCCCCCCSCSSCCSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCSSTTCCCCCCCBCTTSCBSSCHHHHHHHHHHHHHHHHHHHGGGTCSSCCCCCC >sa_dssp EEEEEEEEDEEEDDEEDDEEDDDCCDACCCCDCADDCCEEDDCECCECEDEDEEECEEDEEEEDDBDCEECCCCEBCEDCEDBCCDBEEDDEEDDEEEE >ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC >ss_conf 988888898401489998999999999999999999984588788854346899865475788177499999999999999999999973677688998 >Consensus SRWxxxpxxxtxipxxltxeqxxxyxxxxrieeitxkLxxxxxxxpxxxrxpSPpPxYDxxGxRiNTRexRxrxxLexERxxliexxxkxxPxfxPPxD >c4fxwB_ SRWNQDPGXPTVIPPGLTREQERAYIVQLQIEDLTRKLRTGDLGIPPNPEDRPPEPIYNSEGKRLNTREFRTRKKLEEERHNLITEXVALNPDFKPPAD >UniRef50_Q9LU44(128-235:804) AT5G51300 protein n=18 Tax=Viridiplantae RepID=Q9LU44_ARATH E=3e-21 s/c=0.94 id=35% cov=101% SRWADDEPRTQIQLPDFMKDFTGGIEFDPEIQALNSRLleisRMLQSGMPLDDRPegqrsPSPEPVYDNMGIRINTREYRARERLNRERQEIIAQIIKKN PAFKPPAD >UniRef50_B0EFL9(27-130:309) Branchpoint-bridging protein, putative n=2 Tax=Entamoeba RepID=B0EFL9_ENTDI E=2e-17 s/c=0.86 id=30% cov=100% SRWDRKirdvlPNIPVHIPPSLDEKYWDTLAIRIRYEELQYALGTHRLGLNTERDRtPSPPKQYNENQQEI-TREMRREEKLKNERLYVVDRAIEIYPSF RIPAE >UniRef50_Q5CQD0(53-158:471) Ms15p; KH + 2 Znknuckle (C2HC) n=2 Tax=Cryptosporidium RepID=Q5CQD0_CRYPV E=1e-26 s/c=1.13 id=33% cov=101% SRWKSVyekeyiPPAYSDFPPGMSNYEIDQFLREQRLDELIYKLQMGEIEYGsPDIREPSPPPIYDKNGSRINTREVRVRKNMEEELSNLIEYMSKNVEG YVVPKD >UniRef50_A0DZK7(132-238:499) Chromosome undetermined scaffold_70, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0DZK7_PARTE E=5e-23 s/c=1.01 id=31% cov=101% TRWGPEyektfqPPSLNCIPPDLSIDDLEYIIRLYCLDDINQKLQQPIDSKMDDPdlRSPSPEPVYDQHGKRVNTREVRRKDNFQRIKCSLTEECIKINK NFVPPHD >UniRef50_Q6BSP4(33-155:518) Branchpoint-bridging protein n=4 Tax=Saccharomycetaceae RepID=BBP_DEBHA E=2e-21 s/c=0.84 id=34% cov=91% ----------TIVTGHLTQEQMDAYQQYFRIEEISDILRMasesqsevlsllpsgNIANNPNYEREPSPPPKYDAAGNRSNTREARTKLALEKERHYLVE VAAGSIKNYMSPID >UniRef50_A2EWZ0(14-116:306) Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2EWZ0_TRIVA E=3e-21 s/c=0.99 id=19% cov=99% SKWGPEdektvmSNVANILPPNLPPDVLNAFLLRFQLEEVQYKMNHLQEERKNILYGETLINNMNPDQRGFIHPDVRARDALVKERSQILNAIEKIFPVF RPP-- >UniRef50_A2E7L6(7-114:317) KH domain containing protein n=1 Tax=Trichomonas vaginalis RepID=A2E7L6_TRIVA E=4e-16 s/c=0.79 id=26% cov=93% ------PNYPTVLPPGMDSVTLQSVLLRAQFEEIQFKLAHLKTEAPrviqfDEVLSKKNTLVYDQNGYRKDPTQVRARDSLFQERKEVIHAIDSIYPLFR VP-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * 4143 * * * 242 3354 * * * 1 0 * * * * * * 4169 0 0 R 2 * * * * * * * * 2350 * * * * * 315 * * * * * 2 0 * * * * * * 4198 0 0 W 3 * * * * * * * * * * * * * * * 4646 * * 59 * 3 42 5119 * 1585 585 * * 4215 1000 0 N 4 2186 * 4020 * * 1317 * * 3738 * * 3417 * * * 2749 * * * * 4 0 * * * * * * 4215 0 0 Q 5 4085 * 2911 4966 * 3493 * * * * * 4881 1432 5329 4020 2598 5003 * * * 5 187 3673 4538 2585 263 * * 4215 1513 0 D 6 2115 * 3095 2240 * 4134 3617 4760 2911 * * * 4786 * * 5103 5001 4817 * * 6 813 1215 * 2546 271 * 0 4311 3273 1000 P 7 * * 5034 2871 * * * 5276 * * * 4127 935 4185 * 2788 5208 * * * 7 147 3364 * 2542 272 * 0 4473 1770 1000 G 8 4220 * * * * 1795 * 5111 * * * 2370 1619 * * 4740 3778 * * * 8 80 * 4220 * * * 0 4483 0 1000 X 9 3796 4783 * * * 3904 * 3239 5036 3034 2936 * 2762 * 3340 4511 * 3645 * 3925 9 0 * * * * * 0 4344 0 1641 P 10 3347 * * * 4957 * * * * 3235 * * 957 * 5160 4823 4208 * * 2932 10 90 4050 * 2640 252 * 0 4310 1604 1641 T 11 5499 * * * * * * * * * 5221 2873 * 3791 * 3530 870 3200 * * 11 0 * * * * 940 1062 4417 0 1641 V 12 3246 4893 3604 5265 * 5185 4477 1886 3469 6446 4994 5043 4381 5676 6191 5561 7014 3230 * 5082 12 0 * * * * 0 * 4513 0 1000 I 13 4759 * * * 3745 * * 1484 * 1792 5412 * * 4126 * * * 2631 * * 13 0 * * * * * * 4656 0 0 P 14 * * 5648 5879 * 5442 * * 5475 3523 6696 * 895 * 6316 4614 2455 4399 * * 14 0 * * * * * * 4656 0 0 P 15 3540 5036 * * * 2106 * * * 4643 * * 1287 5468 * 3259 * 3748 * * 15 0 * * * * * * 4656 0 0 G 16 4418 5475 2344 * * 2005 2876 * * 5412 * 2361 6263 5307 * 4805 5944 * * 4643 16 54 * 4759 * * * * 4656 0 0 L 17 * * * 5086 3596 * * 5469 * 664 2454 * * * * * * 4268 * * 17 0 * * * * 0 * 4651 0 1219 T 18 * * 2615 * * 5072 * * 4473 * 4762 4459 4043 * * 3171 1033 5701 * * 18 0 * * * * * * 4697 0 0 R 19 3876 * 4694 2816 * * * 3932 3782 5249 5518 4629 1894 3033 4865 3854 * * 5072 * 19 0 * * * * * * 4697 0 0 E 20 4987 * 2059 1179 * * 5971 * 3513 * * * 5709 4699 * 4437 * 4368 * 5009 20 32 * 5502 * * * * 4697 0 0 Q 21 * 5134 3487 3027 4729 * * * * 5669 * * * 941 * * 4359 3362 * 4819 21 0 * * * * 0 * 4673 0 1000 E 22 3561 * 5502 5235 * * * 2944 * 1543 3893 * * 3477 4083 * 4156 3529 4850 * 22 0 * * * * * * 4697 0 0 R 23 5112 * 1456 2248 * 4156 * * 5468 5502 * 3679 * 3803 4017 * 4744 5474 * 5381 23 0 * * * * * * 4697 0 0 A 24 1363 * * 5502 * 3568 6227 * 5488 5518 5913 * * 2595 5709 3121 4850 4177 * 4597 24 0 * * * * * * 4697 0 0 Y 25 * * * * 2328 * * 3677 * 3729 5072 * * * 5145 * * 3460 * 1004 25 0 * * * * * * 4697 0 0 I 26 3181 * 5701 4762 * * * 2782 * 1642 4208 * * 2351 * 4038 5054 5226 * * 26 0 * * * * * * 4697 0 0 V 27 5913 * * 5313 4762 * * 2606 4006 1786 7395 * * 3750 2344 * 5226 3309 * * 27 0 * * * * * * 4697 0 0 Q 28 5145 * 4156 2574 * * 4137 5668 * 4597 4111 5518 * 2531 2284 * * 5344 * 2765 28 28 * 5697 * * * * 4697 0 0 L 29 3783 * * * 1718 * * 3233 * 2495 * * 4142 3102 * * * 3931 * 3308 29 73 5103 5609 1000 1000 * 0 4677 1000 1000 Q 30 * 5709 * 3364 * * * * 6211 * * * * 2242 651 * * * * 5498 30 32 5498 * 0 * * 0 4652 1000 1219 I 31 * * * * 3873 * 5503 1141 * 1534 * * * * * 5301 * 4886 * 4269 31 0 * * * * 1000 1000 4652 0 1219 E 32 * * 1953 948 * * * * * 6415 * 4042 * 2996 5284 * * * * * 32 50 4863 * 2807 222 0 * 4700 1199 1000 D 33 4430 * 1961 653 * * * * * * * * * * * 4701 5477 * * * 33 0 * * * * * * 4707 0 0 L 34 5870 4401 * * * * * 937 * 1835 5982 * * * * * 5176 3481 * * 34 0 * * * * * * 4707 0 0 T 35 * 5759 * * * * * 5031 * * 5276 3328 * 2456 5425 1957 1551 5558 * * 35 42 5114 * 1000 1000 * * 4707 1000 0 R 36 4506 5167 4601 * 4384 5715 4326 4827 4247 * * 3956 * 2318 2595 4651 4701 5425 * 2733 36 0 * * * * * * 4707 0 0 K 37 4013 * * * 6184 * 5934 3782 641 4771 4941 * * 4555 3601 * * * * * 37 0 * * * * * * 4707 0 0 L 38 * * * * * * * 4219 * 325 3191 * * * * * * 4699 * * 38 96 3950 * 1563 596 * * 4707 2115 0 R 39 2610 * * 4264 * 4873 * * 3385 * * 3417 * 2818 1460 6184 4586 * * * 39 45 5012 * 3631 121 * * 4707 1302 0 T 40 4401 6025 * * * * 3215 3590 6027 3668 3345 4578 * 3280 * 2708 2319 4161 * * 40 38 5266 * 3856 103 * * 4707 1081 0 G 41 4424 * 5626 5114 * 1379 4099 * 5425 2985 * 3678 3151 3564 6125 * * 5477 * * 41 36 5325 * 3078 182 * * 4707 1540 0 D 42 * * 1714 3202 * * 5363 4263 4391 6488 4879 3718 4479 3088 4876 5721 5522 3786 * 4991 42 87 4096 * 1972 425 * * 4704 2055 0 L 43 4990 * 3643 4063 2960 * * 3187 * 1854 5492 * * * 4266 5754 4391 2891 * 4703 43 287 3369 3581 1000 1000 * * 4704 2364 0 G 44 6094 * 3914 1504 * 2277 * * 4898 3718 * 4718 5302 * 5075 4556 * 3119 * * 44 43 5102 * 0 * 292 2447 4707 1558 2250 I 45 3754 * 3800 * 4108 * * 3121 4623 3159 5739 4707 2973 * 3096 5962 6152 2559 * 5179 45 159 3262 * 1373 704 * 0 4699 2404 1000 P 46 3320 * 3159 4314 * 4776 6508 * 4061 5680 4623 4389 1032 * * * 4910 * * * 46 182 3076 * 1741 513 0 * 4699 2575 1000 P 47 4944 * 2067 2510 * 5316 4424 * 5997 5760 * 3457 2306 5999 * 5006 3576 5402 * * 47 88 4078 * 308 2380 * * 4706 1880 0 N 48 * * 1966 2903 5025 3569 4521 3151 4502 * 4708 3733 5507 * 4085 4657 * 6674 5316 5262 48 35 5368 * 3907 100 * * 4706 1000 0 P 49 5267 4131 3210 3596 * 6545 * 3197 3401 3225 * 5827 3291 6026 2409 5516 * 4433 * 6240 49 116 3691 * 457 1882 * * 4725 2156 0 E 50 * * 3933 2822 * * * * 6196 4102 * * * * 617 * * * * 3850 50 0 * * * * * * 4725 0 0 D 51 5448 * 3527 3237 * 4112 * * * 5567 * 6196 2957 6076 3062 1223 * * * * 51 97 3941 * 1063 940 * * 4725 2035 0 R 52 4810 * * 4112 * * 5347 * 4433 * * 6076 682 * 3375 3305 * * * * 52 119 3657 * 890 1119 * * 4725 2271 0 P 53 * * * * * * * * 4431 * * * 3121 * * 357 4110 * * * 53 115 3708 * 1029 971 * * 4726 2166 0 P 54 * * * * * * * * * 4110 * 4431 159 * * * * * * * 54 42 * 5136 * * * * 4726 0 0 E 55 4439 * 4120 2252 * * * 4036 * * * * 889 * * 6189 3803 * * * 55 20 6189 * 1000 1000 0 * 4688 1000 1243 P 56 * * * * * * * * 4891 4431 * 4110 214 * * * * * * * 56 0 * * * * * * 4726 0 0 I 57 6368 * * 5340 * * * 2150 3266 * * 4110 * 2681 4294 * 3960 1714 * * 57 0 * * * * * * 4726 0 0 Y 58 * * * * * * * * * * 4051 * * * * * * * * 90 58 0 * * * * * * 4707 0 0 N 59 * * 544 * * 4191 * * * * * 2130 * * * 5014 * * * * 59 47 4973 * 0 * * * 4707 1104 0 S 60 3434 * * 4197 * 6053 4210 * 3123 * * 2551 3646 2932 3651 2457 5279 * * * 60 12 6966 * 0 * * * 4707 1000 0 E 61 4279 * 2548 4717 4335 * 3666 * * 4012 3543 1947 * 3767 4833 * 3944 * * 5038 61 0 * * * * * * 4707 0 0 G 62 * * * * * 143 * * * * * * * 3407 * * * * * * 62 0 * * * * * * 4707 0 0 K 63 * * * * * 5757 * 4001 1739 * 5325 3296 * 3103 2635 3439 4421 5133 * 4381 63 0 * * * * * * 4707 0 0 R 64 * * * 4881 * 4051 * * 3996 * * * * * 246 * * * * * 64 0 * * * * * * 4707 0 0 L 65 * * * * 4051 * * 1389 3888 3254 6053 * * * * 4620 2098 3379 * * 65 50 * 4881 * * * * 4707 0 0 N 66 * * 4305 * * * * 3924 * * * 192 * * * * 6947 * * * 66 0 * * * * 0 * 4637 0 1000 T 67 * * 5203 * * * 4051 * * * * * 4381 * * * 210 * * * 67 0 * * * * * * 4707 0 0 R 68 * * * * * * * 5463 4826 * * * 4026 * 266 * 4348 * * * 68 0 * * * * * * 4711 0 0 E 69 5673 * 2152 657 * * 5727 * * 5268 * * * 4348 * * 5200 * * * 69 6 * 7887 * * * * 4711 0 0 F 70 3449 * * * 5301 * 6566 4575 * 3939 3718 5670 * 3013 4685 * 5198 1756 * 2444 70 0 * * * * * 0 4713 0 1000 R 71 * * * * * * * * * * * * * * 37 * * 5321 * * 71 0 * * * * * 0 4713 0 1000 T 72 2067 * * 5594 * * * 4493 5888 5722 4275 * * * 3304 * 3389 2257 5670 2449 72 0 * * * * * 0 4713 0 1000 R 73 6464 * * 4878 4961 * * * 1878 * 5722 * * 5594 939 * 4233 5164 6952 * 73 0 * * * * * 0 4713 0 1000 K 74 3625 * 2161 2004 * * 5422 * 1957 5267 * 4756 * 4950 4287 5750 * * * * 74 0 * * * * * 0 4713 0 1000 K 75 1836 * * 5888 * * * * 1786 * 5164 3794 * 5083 2897 2948 5670 * * * 75 0 * * * * * 0 4713 0 1000 L 76 * * * * 4600 * * * * 544 2340 * * * * * * * 4637 4832 76 0 * * * * * 0 4713 0 1000 E 77 * * 4961 854 4342 * 5422 4967 4878 6082 * 3898 * 3698 * * 4749 3644 * * 77 0 * * * * * 0 4713 0 1000 E 78 4488 * 2876 2059 * 5198 * 5305 1903 * * 4878 * 3751 3072 * 4961 * * * 78 0 * * * * * 0 4713 0 1000 E 79 * * 5954 226 * * * 4600 * 5888 * * * 6052 4170 * * * * * 79 0 * * * * * 0 4713 0 1000 R 80 * * * * * * 4554 * 3362 3654 * * * 5750 433 * * * * 5528 80 0 * * * * * 0 4713 0 1000 H 81 5670 4600 6082 * * * 1507 5468 4342 4878 * 3320 * 3616 3385 2755 * 5619 * 5594 81 0 * * * * * 0 4713 0 1000 N 82 4777 * 5907 1875 5164 * * * 4533 * * 3030 * 3449 2227 4600 4971 4560 * 4059 82 0 * * * * * 0 4713 0 1000 L 83 * 3543 * * * * * 2988 5888 678 5321 * * * * * 5626 3310 * * 83 0 * * * * * 0 4713 0 1000 I 84 * 5422 * * * * * 1126 * 3626 * * * * * * 4063 1404 * * 84 24 5951 * 2585 263 * 0 4713 1000 1000 T 85 3586 * 4201 1053 * 5028 3784 6042 6272 4824 * 4026 * 4144 5198 6403 6603 4432 * * 85 0 * * * * * 0 4713 0 1000 E 86 2971 * * 2552 4092 * * 4579 3166 4685 5833 5722 * 4022 2575 5422 6050 4745 5028 3663 86 0 * * * * 0 * 4713 0 1000 X 87 1496 4490 * * * 5947 * 2550 * 2128 2860 * * 5837 * * * 5061 * * 87 0 * * * * * * 4502 0 0 V 88 3443 * 4348 4026 * * * 2735 * 2583 2229 * * 4021 * 6097 * 2841 * 4283 88 0 * * * * * * 4711 0 0 A 89 3151 * 6046 2953 * 4296 * * 1195 * * * * 5438 3662 3243 4982 5957 * * 89 0 * * * * * * 4711 0 0 L 90 * 6961 * 6279 * * 4886 1792 4294 3092 3831 6097 * 5530 2884 3336 3106 5006 * * 90 0 * * * * * * 4711 0 0 N 91 6085 5031 4054 * 4026 * * 2360 * 4637 * 1989 5957 * 4826 * 5268 2428 * 3590 91 0 * * * * * * 4711 0 0 P 92 * * 6032 4650 * * * * 2750 * * * 443 * 4040 * * * * * 92 0 * * * * * * 4711 0 0 D 93 3584 * 3133 4436 * 2721 4034 * * 3010 * 2101 * * * 4061 4551 4026 * 5472 93 67 4463 * 0 * * * 4711 1553 0 F 94 * * * * 770 * * * * 4826 5673 * * * * * * * * 1479 94 0 * * * * * * 4711 0 0 K 95 5310 * 5727 * * * 5609 4098 2061 * 3950 * * 4619 1887 * 5463 2065 * * 95 0 * * * * * * 4711 0 0 P 96 3195 * * * * * * 4387 * 5268 * * 459 * * 5271 * 3973 * * 96 0 * * * * * * 4711 0 0 P 97 * * * * * * 4711 * * * * * 92 * * 5397 * * * * 97 0 * * * * * * 4487 0 0 A 98 1471 * 4230 6146 * * 3286 4999 5511 5982 5690 4549 3470 4699 * 2661 * 4283 * * 98 0 * * * * * * 4294 0 0 D 99 * * 133 3508 * * * * * * * * * * * * * * * * 99 0 * * 0 * * * 4206 0 0 //