HHsearch 1.5 NAME c4fb3E_ FAM FILE c4fb3E_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4fb3E_.a3m DATE Sat Oct 26 08:26:44 2013 LENG 114 match states, 114 columns in multiple alignment FILT 10 out of 14 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.5 EVD 0.4344 0.4769 SEQ >ss_dssp CCCCTTSTTSEECCSSCCCEEEEEEEEECHHHHHHHHSTTTTSCEEEEEEEEETTEEEEEEEEEEEEEHHHHHHHHTTTCSSSCEEEEEESCHHHHHHHT TSTTCEEEEESSCC >sa_dssp EEBBEDADECBCDEEEDEEDCDBAABBACDEBADDBBEDBEEBDCEBCABACBEEBAAABBCBEDECDCDDBDDCBDEDBEEDDCCBCABDDDEDACDCB DDEDBEDDDCDDEE >ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEEEEEHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH CCCHHHHHHHCCCC >ss_conf 9323789998766543145310001022046799999988530823012263167968999936801789999997521147788756623589998862 32303577525898 >Consensus xDfPxxLxxfLShAixSNkTxxxFliYTTxEKxxxLYxxixkxkxxFksrhxxxxxxxlfxiTxxKHRVsAiknxcsxxCtvSFLxcKaVxKpxexYxxl xxxpfxlixEnkpG >c4fb3E_ SDFPSSLTGYLSHAIYSNKTFPAFLVYSTKEKCKQLYDTIGKFRPEFKCLVHYEEGGMLFFLTMTKHRVSAVKNYCSKLCSVSFLMCKAVTKPMECYQVV TAAPFQLITENKPG >UniRef50_P24851(130-241:619) Large T antigen n=2 Tax=Bovine polyomavirus RepID=LT_POVBO E=2e-37 s/c=1.39 id=43% cov=98% -DFPEVLKEYVSNALFTNRTYNCFIIFTTAEKGKELYPCIqAAYKCTFIALYMYNGDSVLYIITVGKHRVNAMENLCSKKCTVSFLQAKGVLKPQEAYNV CCT--FELISQNIQG >UniRef50_B6E002(176-290:670) Putative large T antigen n=1 Tax=Myotis polyomavirus VM-2008 RepID=B6E002_9POLY E=8e-41 s/c=1.45 id=43% cov=101% TEMPDDLLPFLSAAILSNKTVTNFLVYTTIEKSEYLYRKLrERYKATFISRHRLEAAGFVYMITPSRHRVTAVQNFASALCSVSFLIIKAVIKPFECYQH LCLPPYNKDMENLDG >UniRef50_P03075(182-477:751) Large T antigen n=2 Tax=Polyomavirus RepID=LT_POVHA E=1e-69 s/c=0.38 id=55% cov=101% DDFPTILRGFLSHAIFSNKTQNAFIIYSTKEKCEVLYEQIDKYNPDYKgIFIMKQTEAFVMFMTPGKHRVAAVKSYCCKFCTVSFLLCKAVTKPLELYNC VAKCdDFQILKENKPG >UniRef50_P04008(184-416:697) Large T antigen n=1 Tax=B-lymphotropic polyomavirus RepID=LT_POVLY E=5e-54 s/c=0.45 id=53% cov=101% DDFPVCLYSFLSHAIYSNKTMNSFLIYTTLEKARQLYKTVekSKIVVDFKASFSYQdeegEGCLLFLITLGKHRVSAVKHFCVSQCTFSFIHCKAVVKPL ELYKTLSKPPFKLLEENKPG >UniRef50_B0G0W1(296-456:469) Truncated large T antigen n=6 Tax=Merkel cell polyomavirus RepID=B0G0W1_9POLY E=8e-38 s/c=0.65 id=50% cov=101% TDFPIDLSDYLSHAVYSNKTVSCFAIYTTSDKAIELYDKIEKFKVDFKSRHACELGCILLFITLSKHRVSAIKNFCSTFCTISFLICKGVNKMPEMYNNL CKPPYKLLQENKPL >UniRef50_C9X3W6(126-396:693) Large T antigen n=1 Tax=Orangutan polyomavirus RepID=C9X3W6_9POLY E=1e-104 s/c=0.67 id=50% cov=101% NDFPNVLRPFLSSAVYSNKTLSSFLIYTTNEKAEFLYKTLDKFNPDFKSRHAFQEGSLVFLMTPGKHRVSAIRNLCLTHCTVSFLLCKAVIRQVECYRCM CSEPFKLLEESKPG >UniRef50_P03070(100-350:708) Large T antigen n=411 Tax=root RepID=LT_SV40 E=4e-98 s/c=0.64 id=46% cov=101% KDFPSELLSFLSHAVFSNRTLACFAIYTTKEKAALLYKKImEKYSVTFISRHNSYNHNILFFLTPHRHRVSAINNYAQKLCTFSFLICKGVNKEYLMYSA LTRDPFSVIEESLPgG >UniRef50_C9X3X1(220-444:735) Large T antigen n=1 Tax=Orangutan polyomavirus RepID=C9X3X1_9POLY E=3e-96 s/c=0.82 id=59% cov=101% LDFLNCLFDYLSHAIYSNKTLNSFLLYTTCEKGKVLYEKVEKFKPEFKSRHKYEEGNLIFIITLGKHRVSAIKNFCAGFCTVSFLLCKAVNKPMECYNCL SKGPFTLIEENKPG >UniRef50_A8Y984(112-360:655) Large T antigen n=3 Tax=Polyomavirus RepID=LT_POVSM E=1e-94 s/c=0.65 id=49% cov=101% KDMPELLRNFLSNAILSNKTLTCFLVYTTLEKSSLLYSKLsEKFKPTFISRHKLDNEGLIFLITPSKHRVSAITNFCSNLCSVSFLIVKAVIKEYSCYCA LCVEPFVLVVENIPG # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * 2108 * * * * * 2165 3399 * 3262 * * * 3199 2076 * * * 1 0 * * * * * * 2301 0 0 D 2 * * 175 3132 * * * * * * * * * * * * * * * * 2 0 * * * * * * 2470 0 0 F 3 * * * * 331 * * * * * 2285 * * * * * * * * * 3 0 * * * * * * 2470 0 0 P 4 * * * * * * * * * 3612 * * 123 * * * * * * * 4 0 * * * * * * 2470 0 0 S 5 * * 3132 2169 * * * 3424 * * * 2539 * * * 2358 3223 3377 * * 5 0 * * * * * * 2470 0 0 S 6 * 2490 2271 3304 * * * 3223 * 3455 * * * * * 3414 * 2174 * * 6 0 * * * * * * 2470 0 0 L 7 * * * * * * * * * 0 * * * * * * * * * * 7 0 * * * * * * 2470 0 0 T 8 * * * * 3612 * * * 2929 2216 * * * * 1793 3424 3414 * * 3377 8 0 * * * * * * 2470 0 0 G 9 * * 2515 2929 * 2315 * * * * * 3455 2291 * * 2340 * * * * 9 0 * * * * * * 2470 0 0 Y 10 * * * * 737 * * * * * * * * * * * * * * 1322 10 0 * * * * * * 2470 0 0 L 11 * * * * * * * * * 203 * * * * * * * 2929 * * 11 0 * * * * * * 2470 0 0 S 12 * * * * * * * * * * * * * * * 0 * * * * 12 0 * * * * * * 2470 0 0 H 13 3132 * * * * * 803 * * * * 2169 * * * 3470 * * * * 13 0 * * * * * * 2470 0 0 A 14 0 * * * * * * * * * * * * * * * * * * * 14 0 * * * * * * 2470 0 0 I 15 * * * * * * * 776 * 2929 * * * * * * * 1813 * * 15 0 * * * * * * 2470 0 0 Y 16 * * * * 1558 * * * * 2285 * * * * * * * * * 1135 16 0 * * * * * * 2470 0 0 S 17 * * * * * * * * * * * * * * * 203 2929 * * * 17 0 * * * * * * 2470 0 0 N 18 * * * * * * * * * * * 0 * * * * * * * * 18 0 * * * * * * 2470 0 0 K 19 * * * * * * * * 382 * * * * * 2105 * * * * * 19 0 * * * * * * 2470 0 0 T 20 * * * * * * * * * * * * * * * * 0 * * * 20 0 * * * * * * 2470 0 0 F 21 * * * * 3414 * * * * 1456 3377 * * 3223 * * * 2271 * 2929 21 0 * * * * * * 2470 0 0 P 22 3304 * * * * * * * * * * 1264 3414 * * 2447 2285 * * * 22 0 * * * * * * 2470 0 0 A 23 2315 1263 * * * * * * * * * 3132 * * * 1898 * * * * 23 0 * * * * * * 2470 0 0 F 24 * * * * 0 * * * * * * * * * * * * * * * 24 0 * * * * * * 2470 0 0 L 25 2363 * * * * * * 2069 * 818 * * * * * * * * * * 25 0 * * * * * * 2470 0 0 V 26 * * * * * * * 691 * 3612 * * * * * * * 1742 * * 26 0 * * * * * * 2470 0 0 Y 27 * * * * 2929 * * * * * * * * * * * * * * 203 27 0 * * * * * * 2470 0 0 S 28 * * * * * * * * * * * * * * * 2315 324 * * * 28 0 * * * * * * 2470 0 0 T 29 * * * * * * * * * * * * * * * * 0 * * * 29 0 * * * * * * 2470 0 0 K 30 2929 3612 * * * * * 3132 1727 2416 * 3470 * * * 3424 * * * * 30 0 * * * * * * 2470 0 0 E 31 * * 3424 141 * * * * * * * * * * * * * * * * 31 0 * * * * * * 2470 0 0 K 32 * * * * * * * * 0 * * * * * * * * * * * 32 0 * * * * * * 2470 0 0 C 33 1393 2315 * * * 2231 * * * * * * * * * 2285 * * * * 33 0 * * * * * * 2470 0 0 K 34 3304 * * 1683 * * * 3424 1704 * * * * * 3377 3455 * * * * 34 0 * * * * * * 2470 0 0 Q 35 * * * 2156 3470 * * * * 2378 * * * 2396 * * * 2405 * 3132 35 0 * * * * * * 2470 0 0 L 36 * * * * * * * * * 0 * * * * * * * * * * 36 0 * * * * * * 2470 0 0 Y 37 * * * * * * * * * * * * * * * * * * * 0 37 0 * * * * * * 2470 0 0 D 38 * * 2419 2405 * * * * 1797 * * * 2929 * 3132 3455 * * * * 38 0 * * * * * * 2470 0 0 T 39 * 2929 * * * * * * 1055 * * * * 3223 * * 1835 * * * 39 0 * * * * * * 2470 0 0 I 40 * * * * * * * 925 * 1759 * * * * * * * 2490 * * 40 1101 905 * 238 2719 * * 2470 2150 0 G 41 2929 * 2341 1055 * 3414 * * * * * * * * * 3377 * * * * 41 0 * * * * * * 2470 0 0 K 42 2929 * * * * * * * 406 * * * * * 3132 * * * * * 42 0 * * * * * * 2470 0 0 F 43 * * * * 1152 * * 3377 * * * * * * * * * * * 1140 43 0 * * * * * * 2470 0 0 R 44 * * * * * * * * 968 * * 2341 * * 3414 3304 * 3377 * * 44 0 * * * * * * 2470 0 0 P 45 3132 2929 * * * * * * * * * * 1108 * * * * 1783 * * 45 0 * * * * * * 2470 0 0 E 46 * * 1371 2510 * * * * * * * * * * * * 1192 * * * 46 0 * * * * * * 2470 0 0 F 47 * * * * 163 * * * * * * * * * * * * * * 3223 47 0 * * * * * * 2470 0 0 K 48 * * * * * * * 1192 831 * * * * * * * * * * * 48 163 3223 * 0 * * * 2470 1000 0 C 49 2136 3414 * * * * * 3223 * * * * * * * 807 * * * * 49 0 * * * * * * 2470 0 0 L 50 * * * * 3223 * * * * 2151 * * * * 807 3377 * * * * 50 0 * * * * * * 2470 0 0 V 51 * * * * 3377 * 807 3223 * * * * * * * * * 3414 * 2929 51 0 * * * * * * 2470 0 0 H 52 2447 * * * * * 3414 * 2532 * 2069 3304 * * 3132 3377 * * * * 52 0 * * * * * * 2470 0 0 Y 53 * 3424 * * 3470 * * * 3223 2285 * * * * * 3304 * * * 1311 53 0 * * * * * * 2470 0 0 E 54 * * 3455 1386 * * * * * * * 2929 * 1768 * * * * * 3304 54 146 3377 * 2000 415 * * 2470 1000 0 E 55 3132 * * 1466 * 2929 * * * 3424 * 2378 * * * * 3223 * * * 55 0 * * * * * * 2470 0 0 G 56 3132 * 2929 2335 * 1135 3304 * * * * * * * * * * * * * 56 0 * * * * * * 2470 0 0 G 57 3223 2401 * * * 1742 * * * * * 2450 * * * 2174 * * * * 57 0 * * * * * * 2470 0 0 M 58 * * * * 2177 * * 2363 * 1476 3414 * * * * * * 2929 * * 58 0 * * * * * * 2470 0 0 L 59 * * * * * * * 2532 * 955 * * * * * * * 1683 * * 59 0 * * * * * * 2470 0 0 F 60 * * * * 851 * * * * 3424 3223 * * * * * * * * 2027 60 0 * * * * * * 2470 0 0 F 61 * * * * 1339 * * 2231 * 1849 3132 * * * * * * * * * 61 0 * * * * * * 2470 0 0 L 62 * * * * * * * 719 * 2358 2341 * * * * * * * * * 62 0 * * * * * * 2470 0 0 T 63 * * * * * * * * * * * * * * * * 0 * * * 63 0 * * * * * * 2470 0 0 M 64 * * * * * * * * * 1883 3414 * 989 * * * * 2929 * * 64 0 * * * * * * 2470 0 0 T 65 * * * * * 981 3304 * * * * * * * * 1745 3414 * * * 65 0 * * * * * * 2470 0 0 K 66 * * * * * * * * 350 * * * * * 2216 * * * * * 66 0 * * * * * * 2470 0 0 H 67 * * * * * * 0 * * * * * * * * * * * * * 67 0 * * * * * * 2470 0 0 R 68 * * * * * * * * * * * * * * 0 * * * * * 68 0 * * * * * * 2470 0 0 V 69 * * * * * * * * * * * * * * * * * 0 * * 69 0 * * * * * * 2470 0 0 S 70 3223 * * * * * * * * * * 2929 * * * 627 3132 * * * 70 0 * * * * * * 2470 0 0 A 71 0 * * * * * * * * * * * * * * * * * * * 71 0 * * * * * * 2470 0 0 V 72 * * * * * * * 1128 * * 2929 * * * * * * 1282 * * 72 0 * * * * * * 2470 0 0 K 73 * * * 2929 * * * * 1083 * * 3304 * 3132 3470 * 3455 * * * 73 0 * * * * * * 2470 0 0 N 74 * * * * * * 3377 * * * * 328 * * * 3223 * * * * 74 0 * * * * * * 2470 0 0 Y 75 * * * * 1070 * * * * 2174 * * * * * * * * * 1727 75 0 * * * * * * 2470 0 0 C 76 2216 350 * * * * * * * * * * * * * * * * * * 76 0 * * * * * * 2470 0 0 S 77 3612 3223 * * * * * * * 3470 * * * 3304 * 934 * 3377 * * 77 0 * * * * * * 2470 0 0 K 78 3132 * * * * 3612 * * 1206 * * 3455 * * * 3377 2447 * * * 78 0 * * * * * * 2470 0 0 L 79 * * * * 1826 * 3470 * 2929 1321 * * * 3377 * * * * * * 79 0 * * * * * * 2470 0 0 C 80 * 0 * * * * * * * * * * * * * * * * * * 80 0 * * * * * * 2470 0 0 S 81 * * * * * * * * * * * * * * * 1742 513 * * * 81 0 * * * * * * 2470 0 0 V 82 * * * * 2340 * * 3424 * * * * * * * * * 495 * * 82 0 * * * * * * 2470 0 0 S 83 * * * * * * * * * * * * * * * 0 * * * * 83 0 * * * * * * 2470 0 0 F 84 * * * * 0 * * * * * * * * * * * * * * * 84 0 * * * * * * 2470 0 0 L 85 * * * * * * * 3377 * 146 * * * * * * * * * * 85 0 * * * * * * 2470 0 0 M 86 * * * * * * 3377 1323 * 1841 3414 * * 2929 * * * * * * 86 0 * * * * * * 2470 0 0 C 87 2929 592 * * * * * 3132 * * * * * * * * * 3455 * * 87 0 * * * * * * 2470 0 0 K 88 * * * * * * * * 0 * * * * * * * * * * * 88 0 * * * * * * 2470 0 0 A 89 568 * * * * 1619 * * * * * * * * * * * * * * 89 0 * * * * * * 2470 0 0 V 90 * * * * * * * * * * * * * * * * * 0 * * 90 0 * * * * * * 2470 0 0 T 91 * * * * * * * 1759 * 2929 * 1857 * * * * 2315 3377 * * 91 0 * * * * * * 2470 0 0 K 92 * * * * * * * * 136 * * * * * 3470 * * * * * 92 0 * * * * * * 2470 0 0 P 93 * * * 2378 * * * * * * 3424 * 680 3470 * * * * * * 93 0 * * * * * * 2470 0 0 M 94 * * * * 3132 * * * * 2298 2510 * 3424 2929 * * * 3470 * 2378 94 0 * * * * * * 2470 0 0 E 95 * * * 308 * * * * * 3304 * * * * * 3455 * * * * 95 0 * * * * * * 2470 0 0 C 96 2929 1086 * * * * * * * 2298 2363 * * * * * * * * * 96 0 * * * * * * 2470 0 0 Y 97 * * * * * * * * * * * * * * * * * * * 0 97 0 * * * * * * 2470 0 0 Q 98 * 3455 * * * * * * 3377 * * 1275 * 2266 3470 3304 * * * * 98 0 * * * * * * 2470 0 0 V 99 2378 1841 * * * * 3132 * * * * 3424 * * * * 3377 2151 * * 99 0 * * * * * * 2470 0 0 V 100 * 2929 * * * * * * * 792 3470 * * * * * * 2315 * * 100 0 * * * * * * 2470 0 0 T 101 3223 944 * * * * * * * * * * * * * 2490 2358 * * * 101 0 * * * * * * 2470 0 0 A 102 3414 * * * * * * * 1403 3132 * * * * 3304 3470 2929 3455 * * 102 203 * 2929 * * * * 2470 0 0 A 103 3199 3028 3099 2248 * 3399 * * * * * * 1529 * * * * * * * 103 189 3028 * 0 * * 0 2301 1000 1000 P 104 * * 3028 * * * * * * * * * 189 * * * * * * * 104 0 * * * * 0 * 2301 0 1000 F 105 * * * * 335 * * * * * * * * * * * * * * 2271 105 0 * * * * * * 2470 0 0 Q 106 * * * 2929 * * * * 1838 * * 3132 * 2315 * 3304 3612 3455 * * 106 0 * * * * * * 2470 0 0 L 107 * * * * * * * 3223 3132 561 * * * * * * * 3304 * * 107 0 * * * * * * 2470 0 0 I 108 * * 3132 * * * * 1293 * 1371 * * * * * * * 3455 * * 108 0 * * * * * * 2470 0 0 T 109 * * * 1436 * * * * 3223 * 3132 * * 3424 * 2929 3414 3455 * * 109 0 * * * * * * 2470 0 0 E 110 * * * 203 * * * * * * * * * 2929 * * * * * * 110 0 * * * * * * 2470 0 0 N 111 * * * * * * * * * * * 307 * * * 2385 * * * * 111 0 * * * * * * 2470 0 0 K 112 * * * * * * * 2169 831 2216 * * * * * * * * * * 112 0 * * * * * * 2470 0 0 P 113 * * 3132 * * * * * * * * * 406 2929 * * * * * * 113 154 3304 * 0 * * * 2470 1000 0 G 114 * * * * * 141 * * * 3424 * * * * * * * * * * 114 0 * * 0 * * * 2470 0 0 //