HHsearch 1.5 NAME c4fasD_ FAM FILE c4fasD_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4fasD_.a3m DATE Sat Sep 7 08:23:53 2013 LENG 49 match states, 49 columns in multiple alignment FILT 2 out of 6 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.1 EVD 0.4634 2.4843 SEQ >ss_dssp CCCCCCHHHHHHHHTTTTSCTTCEEEEEEEEETTEEEEEEHHHHHHHHC >sa_dssp EEEEDDEDBDDBCECAEEDEEECECEBEDDEEEEEDCDCDACEBDEECE >ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHHCCCCCCCEEEEEECCCEEEECC >ss_conf 9676448887877650687712576410202378289996045253219 >Consensus slapisakdxlxylackdkkptdvvkshtxvengkivrvkcgdxvaxvq >c4fasD_ SLAPISAKDMLDYLACKDKKPTDVVKSHTEVENGKIVRVKCGDIVALVQ >UniRef50_Q0AHH0(29-77:91) Putative uncharacterized protein n=2 Tax=Nitrosomonas RepID=Q0AHH0_NITEC E=1e-17 s/c=1.85 id=88% cov=102% SLAPISAKDLLNYLACKDKKPTDVVKSHTDVENGKIVRVKCGDAVAVVQ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 1073 0 0 L 2 * * * * * * * * * 0 * * * * * * * * * * 2 0 * * * * * * 1073 0 0 A 3 0 * * * * * * * * * * * * * * * * * * * 3 0 * * * * * * 1073 0 0 P 4 * * * * * * * * * * * * 0 * * * * * * * 4 0 * * * * * * 1073 0 0 I 5 * * * * * * * 0 * * * * * * * * * * * * 5 0 * * * * * * 1073 0 0 S 6 * * * * * * * * * * * * * * * 0 * * * * 6 0 * * * * * * 1073 0 0 A 7 0 * * * * * * * * * * * * * * * * * * * 7 0 * * * * * * 1073 0 0 K 8 * * * * * * * * 0 * * * * * * * * * * * 8 0 * * * * * * 1073 0 0 D 9 * * 0 * * * * * * * * * * * * * * * * * 9 0 * * * * * * 1073 0 0 M 10 * * * * * * * * * 1000 1000 * * * * * * * * * 10 0 * * * * * * 1073 0 0 L 11 * * * * * * * * * 0 * * * * * * * * * * 11 0 * * * * * * 1073 0 0 D 12 * * 1000 * * * * * * * * 1000 * * * * * * * * 12 0 * * * * * * 1073 0 0 Y 13 * * * * * * * * * * * * * * * * * * * 0 13 0 * * * * * * 1073 0 0 L 14 * * * * * * * * * 0 * * * * * * * * * * 14 0 * * * * * * 1073 0 0 A 15 0 * * * * * * * * * * * * * * * * * * * 15 0 * * * * * * 1073 0 0 C 16 * 0 * * * * * * * * * * * * * * * * * * 16 0 * * * * * * 1073 0 0 K 17 * * * * * * * * 0 * * * * * * * * * * * 17 0 * * * * * * 1073 0 0 D 18 * * 0 * * * * * * * * * * * * * * * * * 18 0 * * * * * * 1073 0 0 K 19 * * * * * * * * 0 * * * * * * * * * * * 19 0 * * * * * * 1073 0 0 K 20 * * * * * * * * 0 * * * * * * * * * * * 20 0 * * * * * * 1073 0 0 P 21 * * * * * * * * * * * * 0 * * * * * * * 21 0 * * * * * * 1073 0 0 T 22 * * * * * * * * * * * * * * * * 0 * * * 22 0 * * * * * * 1073 0 0 D 23 * * 0 * * * * * * * * * * * * * * * * * 23 0 * * * * * * 1073 0 0 V 24 * * * * * * * * * * * * * * * * * 0 * * 24 0 * * * * * * 1073 0 0 V 25 * * * * * * * * * * * * * * * * * 0 * * 25 0 * * * * * * 1073 0 0 K 26 * * * * * * * * 0 * * * * * * * * * * * 26 0 * * * * * * 1073 0 0 S 27 * * * * * * * * * * * * * * * 0 * * * * 27 0 * * * * * * 1073 0 0 H 28 * * * * * * 0 * * * * * * * * * * * * * 28 0 * * * * * * 1073 0 0 T 29 * * * * * * * * * * * * * * * * 0 * * * 29 0 * * * * * * 1073 0 0 E 30 * * 1000 1000 * * * * * * * * * * * * * * * * 30 0 * * * * * * 1073 0 0 V 31 * * * * * * * * * * * * * * * * * 0 * * 31 0 * * * * * * 1073 0 0 E 32 * * * 0 * * * * * * * * * * * * * * * * 32 0 * * * * * * 1073 0 0 N 33 * * * * * * * * * * * 0 * * * * * * * * 33 0 * * * * * * 1073 0 0 G 34 * * * * * 0 * * * * * * * * * * * * * * 34 0 * * * * * * 1073 0 0 K 35 * * * * * * * * 0 * * * * * * * * * * * 35 0 * * * * * * 1073 0 0 I 36 * * * * * * * 0 * * * * * * * * * * * * 36 0 * * * * * * 1073 0 0 V 37 * * * * * * * * * * * * * * * * * 0 * * 37 0 * * * * * * 1073 0 0 R 38 * * * * * * * * * * * * * * 0 * * * * * 38 0 * * * * * * 1073 0 0 V 39 * * * * * * * * * * * * * * * * * 0 * * 39 0 * * * * * * 1073 0 0 K 40 * * * * * * * * 0 * * * * * * * * * * * 40 0 * * * * * * 1073 0 0 C 41 * 0 * * * * * * * * * * * * * * * * * * 41 0 * * * * * * 1073 0 0 G 42 * * * * * 0 * * * * * * * * * * * * * * 42 0 * * * * * * 1073 0 0 D 43 * * 0 * * * * * * * * * * * * * * * * * 43 0 * * * * * * 1073 0 0 I 44 1000 * * * * * * 1000 * * * * * * * * * * * * 44 0 * * * * * * 1073 0 0 V 45 * * * * * * * * * * * * * * * * * 0 * * 45 0 * * * * * * 1073 0 0 A 46 0 * * * * * * * * * * * * * * * * * * * 46 0 * * * * * * 1073 0 0 L 47 * * * * * * * * * 1000 * * * * * * * 1000 * * 47 0 * * * * * * 1073 0 0 V 48 * * * * * * * * * * * * * * * * * 0 * * 48 0 * * * * * * 1073 0 0 Q 49 * * * * * * * * * * * * * 0 * * * * * * 49 0 * * 0 * * * 1073 0 0 //