HHsearch 1.5 NAME c4f2fA_ FAM FILE c4f2fA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4f2fA_.a3m DATE Mon Feb 4 12:05:19 2013 LENG 100 match states, 100 columns in multiple alignment FILT 114 out of 419 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.2 EVD 0.4121 -1.2965 SEQ >ss_dssp CCCCCEECEEETTEEEEEEEESSSEESSEEEEETTSCEEEEEEECCCCGGGSEEEEGGGTEEEECCTTCEEEEEECCCSCEEEEEEETTSSSEEEEEEEC >sa_dssp EEEEDCCCEECEDCBDBDABBDEBBECCCADADDDCCACACACBCCEDECBDCABAEDDECEDDBDDEDDCDBEBDADEDDEBCAAACEDECEAAACBCE >ss_pred CCCCEEEEEECCCEEEEEEEECCCEECCEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEECCCCEEEEEEECCCCEEEEEEECCCEEEEEEEEEC >ss_conf 9851024371288089999984852067789808984999999467876414799746671026559975999995677627999807542569999949 >Consensus gxxxxxxAxxxxgxxxvxixxxxxfxPxxixVxxGxxVxxxxxnxdxxxxxhxvxxxxxxxxxxlxpGxxxtixftxxxpGxyxxxCgxxxxxGxixVxe >c4f2fA_ GMTEIVKASLENGIQKIRIQAEKGYHPAHIQLQKGIPAEITFHRATPSNCYKEILFEEEGILEPIGVDEEKVIRFTPQELGRHEFSCGMKMQKGSYTVVE >UniRef50_C7NTE2(31-104:127) Putative uncharacterized protein n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NTE2_HALUD E=0.0002 s/c=0.63 id=15% cov=73% ---------------TVTIR-DGAFSPRSWEAAAGHEVTVVFENHDDR---EHVLRGDFGdFDVRVPAGETVSRTVaVPEKPGDYAIECNGTM------- -- >UniRef50_A3IST1(137-228:302) Cytochrome c oxidase subunit 2 n=1 Tax=Cyanothece sp. CCY0110 RepID=A3IST1_9CHRO E=8e-07 s/c=0.59 id=22% cov=73% -----------NFIEEIEVIAKQwewtfHYSQANITtselhLPQNQPVRLILEAEDV---IHGFYVPEFRFKQDIIPNHPLDFTFTPQKQGKYKLH---- ---------- >UniRef50_UPI0000E0E442(27-111:129) hypothetical protein GHTCC_03294 n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0E442 E=1e-05 s/c=0.60 id=16% cov=81% -------------VKHIEIKA-HLFYPSEVVVPEKTPIQLLITNQDEAP--EQFDSFILNREKLIFPQQTVTIFLPKLAVGQYDF---MGEYHphtarGV IKVV- >UniRef50_B7AAE2(68-170:170) Cytochrome-c oxidase n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7AAE2_THEAQ E=3e-12 s/c=0.71 id=22% cov=92% ------KAVVQTGPNQYTVYVlafSYGYQPNPIVVPKGAEIIFKATSPDV---IHGFHIEGTNVNVEVLPGEVTTVRYTFQKAGEYRIICnqycgvGHHL MFGKIVVEE >UniRef50_C1V6H0(43-146:345) Halocyanin domain n=1 Tax=Halogeometricum borinquense DSM 11551 RepID=C1V6H0_9EURY E=1e-08 s/c=0.58 id=13% cov=98% GADTVVDATGRDEVVVEVGTAgnggDFGFSPAVVRVSPETTVTWKWTGK---GGSHNVVAEDGTFESEYYSDAGATFAQTVSTSDVIPYACAPHSamgMR GALVVGD >UniRef50_P50268(138-209:225) Cytochrome c oxidase subunit 2 n=343 Tax=Mandibulata RepID=COX2_APIKO E=0.0006 s/c=0.63 id=17% cov=36% -------------------------------------------------------VPSLGIKVDAVPGRINQLNLISKRPGIFFGQcseiCGMN------ ---- >UniRef50_Q6MPQ5(47-136:150) Putative uncharacterized protein n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MPQ5_BDEBA E=2e-06 s/c=0.59 id=20% cov=91% --------SVEPTQDIVIMNTEKGFVPAQVRLKKGGNYRIHVVNVNNKEKNVSFVLDAFSEHHNTVFGEQKTFHVTPKTDGIFSYQCPETAVQGKFII-- >UniRef50_D1CH29(120-231:534) Nitrite reductase, copper-containing n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CH29_THET1 E=3e-06 s/c=0.47 id=20% cov=87% --TKEVRALIDDNVPYTFWTFNGTVPGPMIRVRVGDTVEITLKNSMDSKMYHSIDLHAVNGPgggstvTQVGPGQTAVFRFKALNPGVYIYHCA------ ------ >UniRef50_C1D4B3(393-510:515) Multicopper oxidase, type 3 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D4B3_LARHH E=0.0001 s/c=0.41 id=18% cov=98% ---ETVPEVLAGNMQTYRWSINGEYYPDARpeLVTAGRRVRLEVVNDTMMFHPMHLHGHFFRVEREgmtdaahsalmdtysVPPKSRVTLAFYSDNPGRW VFHChnMYHMVTGMLRVIE # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 3900 0 0 M 2 2821 3224 * 2307 * * * * 3006 * 2123 * 2357 * * * * * * * 2 0 * * * * * * 4291 0 0 T 3 * * 3566 2242 * * * * 2965 * * * * * 4042 2188 1757 * * * 3 0 * * * * * * 5094 0 0 E 4 * * 3676 2094 * * * * 2163 * * * * 2307 3931 3911 2941 * * * 4 0 * * * * * * 5518 0 0 I 5 3911 * * 4030 * * * 3642 * 4199 * * 4122 4176 4367 3676 2504 1635 * * 5 0 * * * * * * 5518 0 0 V 6 4236 * * * 4428 * * 4398 * * 4109 3931 3350 4052 * 3136 4486 1482 * 4195 6 0 * * * * * * 5642 0 0 K 7 3224 * 4460 * * * * * 1460 * * * 3433 * 1948 4282 3629 * * * 7 0 * * * * * * 6205 0 0 A 8 418 * * 4437 * * * * * * * 4888 * * * 3987 4460 5173 * 4823 8 0 * * * * * * 6443 0 0 S 9 4286 * * 4265 * * * 4654 * 4945 5279 * 4018 3457 3093 2384 2391 3160 * 4854 9 0 * * * * * * 6789 0 0 L 10 3047 * * * * 4922 * 2228 * 2749 4392 * 4352 * 4696 4454 3680 2152 * * 10 0 * * * * * * 6940 0 0 E 11 4110 * 2836 1811 * 5269 5613 * * 5506 * 5119 3741 2596 4279 3946 4526 5642 * * 11 47 4966 * 0 * * * 6981 1660 0 N 12 4200 * 1310 5529 * 2953 * * 4847 * * 2227 5322 4879 5617 4467 5757 * * * 12 0 * * * * * * 7069 0 0 G 13 3535 * 4923 4821 * 766 * * 5726 * * 3445 4712 * * 3898 4599 * * * 13 26 5796 * 1000 1000 * * 7178 1000 0 I 14 4313 * 5954 4597 * 4025 * 4465 4879 4956 5372 * 3988 3967 4468 3639 3201 1823 * 4283 14 20 * 6204 * * * * 7214 0 0 Q 15 5051 * 3977 4123 * * * 7259 3113 4967 * 3505 4148 1478 3701 5759 5029 4401 5802 * 15 12 * 6880 * * 0 * 7272 0 1000 K 16 6403 * 6219 2176 * 6196 6038 3602 3962 4687 * 4339 * 3429 4164 4109 2771 3092 * 5676 16 0 * * * * 0 * 7325 0 1000 I 17 3166 * * 4569 * 5997 * 2185 * 4919 * 6459 * * * * 4379 1113 * 4155 17 0 * * * * * * 7330 0 0 R 18 3976 6582 3923 2166 5039 6276 4882 4359 4215 6421 6004 5303 * 5383 3954 4827 2367 3518 * * 18 58 4662 * 883 1127 * * 7340 2011 0 I 19 * * * * * 5862 * 1436 6280 3195 3384 * * * * 5129 5668 1920 4118 5296 19 94 5198 4808 1585 585 * * 7333 1562 0 Q 20 4755 * 4190 3417 6255 5600 * 4662 3885 5445 4859 4487 * 4410 3827 3226 2287 3095 6209 6420 20 80 6589 4520 0 * 0 * 7322 1000 2161 A 21 1885 * 6118 5608 4671 4867 * 2864 * 5654 6734 * 6408 6044 * 6441 3970 1678 * 4659 21 336 2478 5136 1617 569 422 1980 7327 4890 2723 E 22 4727 * 2021 2483 * 4936 5442 * 3280 * * 2665 * 5043 3849 4213 4118 6708 * * 22 115 4033 6033 0 * 1426 671 7461 3003 2240 K 23 * * 2979 6321 3803 1527 4730 * 3826 6154 5145 2824 5998 6170 * 4448 * * * 3740 23 347 2226 * 227 2779 * 0 7462 5051 2125 G 24 2468 * 4411 4909 5605 1487 6236 * 3663 6184 * * * 5312 4564 3311 3951 5449 * * 24 171 3449 5650 738 1321 606 1544 7462 3764 2125 Y 25 * 6170 * * 811 * * 6298 * 5572 * * * * * 5934 * 5107 4837 1727 25 36 5342 * 1000 1000 * 0 7274 1533 1707 H 26 4895 6216 3703 2585 5965 6589 5581 * 4245 * 4983 5163 6019 4651 4950 2084 3048 4254 * 4233 26 36 6436 6265 0 * 896 1112 7234 1000 1707 P 27 5362 * * * 6385 6044 * 6492 * 6114 * * 220 5779 * 6321 4878 * * * 27 23 * 5972 * * 0 * 7274 0 1475 A 28 2347 * 3015 3737 * 4484 * * 4124 * 5127 2439 4190 * 4704 2624 4865 * * * 28 0 * * * * 0 * 7283 0 1000 H 29 4194 8119 5609 2207 * 5814 4452 5630 4087 * 6058 5000 5080 3812 3258 3801 2590 4223 * 5689 29 0 * * * * * * 7301 0 0 I 30 * * * * 3658 * * 1189 * 2792 6395 * 5285 * 5924 * 6188 2047 6576 5825 30 39 5238 * 2121 377 * * 7310 1617 0 Q 31 5908 * 6890 2765 5621 * 5555 5445 4801 5924 6297 5780 * 4450 3067 4257 2245 2335 6976 4454 31 13 6807 * 0 * * * 7310 1000 0 L 32 3641 * * * * * * 3059 * 2748 * * * * * * * 619 * * 32 0 * * * * * * 7310 0 0 Q 33 4671 * 5738 5120 6841 6246 7037 * 1832 * * 5630 1801 3270 3228 4680 4781 6674 * * 33 0 * * * * * * 7310 0 0 K 34 1905 * * 4195 * 5820 6557 * 2380 5934 * * 2961 5091 4684 4315 4073 2996 * 6663 34 0 * * * * * * 7310 0 0 G 35 * * 3975 5906 * 346 5170 * 5617 * * 4239 * * * 4961 * * * * 35 30 * 5586 * * * * 7310 0 0 I 36 4071 * 2996 2818 * 5217 5674 4276 3765 * 6662 * * 3046 3982 4534 2565 3390 * * 36 17 * 6436 * * 955 1047 7303 0 1677 P 37 6890 * * 3819 * 5755 * 5500 3011 * * 5253 1556 5527 3469 5012 2101 6191 * * 37 0 * * * * * 0 7285 0 1788 A 38 4613 * 5755 * 6265 * * 3008 * 4322 * * * * * * 4812 533 * 5227 38 19 * 6291 * * 0 * 7285 0 1788 E 39 6679 * 6613 2734 6566 * 6802 6850 2588 4671 * * * 5637 2096 5798 2147 3485 * 6796 39 18 * 6343 * * 0 * 7287 0 1000 I 40 6376 * * * 2558 * * 2944 * 1435 5104 * * * * * * 3312 2408 * 40 25 * 5852 * * * 0 7319 0 1516 T 41 5020 * * 2925 * * 3511 3724 3168 4891 * 4915 * 6289 3140 4788 2831 2373 * * 41 88 6561 4359 1585 585 1027 974 7313 1000 2442 F 42 5626 * * * 1983 6468 * 2348 * 2433 6258 5319 * * * * * 2035 4273 * 42 100 5309 4577 1408 682 * 0 7261 1658 3118 H 43 5356 * 4068 3416 * * 3167 4359 4182 5144 * 5376 * * 4131 4866 1815 2480 * * 43 47 6520 5584 1585 585 1601 577 7315 1000 3872 R 44 3920 * 5297 6471 * 3734 * * 4770 5021 * 1291 6420 6596 2860 2509 6572 * * * 44 83 6383 4504 0 * 1573 591 7271 1000 3656 A 45 3774 * 3856 3504 6101 6277 4130 6296 2663 3880 6206 4157 6705 3940 3229 5946 3571 3394 * * 45 201 5503 3211 1590 582 1039 962 7252 1651 3966 T 46 5165 * 1151 3228 * 4095 * * * * 5858 3151 * 6213 5151 3732 3185 * * * 46 104 4775 4918 0 * 1480 641 7212 2197 4690 P 47 3600 * 2857 4112 * 4915 6043 4428 3319 3780 5840 4699 4301 6135 6708 4129 4985 2091 * * 47 274 * 2530 * * 869 1144 7237 0 4217 S 48 3883 * 4420 * 5455 2440 5254 6167 4223 * 4713 3357 5961 4093 4536 2396 3249 6333 6400 6389 48 176 5445 3441 3242 161 1765 503 7084 1519 4958 N 49 3111 * 3666 3786 5604 2060 4713 5343 5079 6503 6166 4645 3412 5430 6406 5041 3704 4242 * 5239 49 65 * 4505 * * 4006 93 7093 0 5039 C 50 4457 1927 6465 5993 5598 4257 3392 3595 5669 4172 3466 * * * * 5858 4830 2657 * 4761 50 16 * 6481 * * 444 1917 7034 0 5444 Y 51 4276 * * 4001 6138 5166 4631 3007 5771 3272 4625 3814 2854 * 5639 2883 3559 4654 * 5198 51 21 * 6138 * * 234 2740 7280 0 3603 K 52 5206 * 4899 3309 5871 * 910 6653 5047 4426 5326 4389 * 4591 * 5615 5095 5272 6298 * 52 0 * * * * 0 * 7286 0 1755 E 53 5580 * 4488 2265 6532 2707 4398 * * 5123 * 3356 5641 4309 6680 2322 3783 5289 * 6591 53 21 6833 7511 0 * * * 7310 1000 0 I 54 5154 * * 6229 1813 * * 2014 * 3667 * * * * 6526 * 6565 1669 6401 * 54 15 6607 * 2322 322 0 * 7316 1000 1000 L 55 3754 * 3986 3031 4557 6248 3738 4606 * 3975 6580 6548 6397 * 5768 4601 3824 1911 5516 4204 55 31 5539 * 602 1551 * * 7314 1652 0 F 56 3171 * 6220 * 2548 4766 * 1768 * 3646 5756 6207 * * 6545 3093 5400 3177 * * 56 74 4322 * 3280 157 * * 7369 3075 0 E 57 4069 * 3181 3366 6429 4463 3779 6636 3838 6733 5814 4248 1620 5503 * 5128 6292 5815 6207 5411 57 55 5191 6676 1488 636 * * 7369 1988 0 E 58 3056 * 1892 2930 5880 2772 4849 6379 4966 * 6297 5648 5584 5328 7860 3249 4714 6509 * * 58 25 5866 * 3208 165 * 0 7463 1542 1000 E 59 4410 * 5111 4778 3082 3401 * * 6628 1655 4137 5975 6283 6812 5330 5122 4110 6522 5641 3181 59 57 5095 6690 2681 245 0 * 7628 2169 1000 G 60 4517 * 3034 5721 6472 1432 4714 6359 4263 7068 6426 3103 5792 * 3480 4363 5897 5469 * * 60 56 5072 6894 2762 230 * 0 7780 2644 1000 I 61 4862 * * 4276 3374 3570 5464 1889 3478 4390 4787 * * * 4752 * 5654 2324 * 6582 61 41 5144 * 2321 322 * 0 7778 2581 1623 L 62 5434 * 3209 2273 5915 * 5284 * 2639 4574 5740 3209 4863 4408 5229 2816 5748 6746 * 6371 62 57 5170 6471 3370 147 1020 980 7778 2209 1623 E 63 4483 * 5773 3419 5256 6740 5015 3637 3086 3713 4358 * 5808 3057 4072 3371 3830 3482 * * 63 47 4962 * 3496 134 623 1511 7715 2773 2072 P 64 5773 * 2287 2815 5722 6368 4940 5205 4798 4156 4989 4626 3912 6046 4724 3659 4188 3266 * 5474 64 57 4881 7616 3065 184 0 * 7790 2182 1000 I 65 3088 * 5878 5668 6074 * * 2361 5963 1578 4326 * * * * 5326 5012 2619 * 5900 65 29 7048 6367 0 * * 0 7795 1000 1000 G 66 2892 * 6139 3402 4817 3839 * 4192 3415 5135 4500 5957 2355 5244 4363 5743 * 3377 * 5128 66 41 6959 5639 2322 322 0 * 7749 1000 1720 V 67 4310 * 6298 4967 5972 5438 * 6702 4236 2752 * * 1062 6475 5943 4036 4718 5346 * 5339 67 9 7317 * 1585 585 0 * 7770 1000 1406 D 68 * * 3544 * 5879 657 5967 * 5402 * * 3549 * 4565 6633 4003 5430 * * * 68 57 5525 5858 3537 130 * * 7785 2209 0 E 69 3936 * 6429 2064 6550 3777 * * 3390 * 4900 6516 4595 2342 3645 4217 4890 5097 * 5306 69 44 * 5044 * * 966 1035 7768 0 1650 E 70 5452 * 3984 3459 * 3907 6874 4653 4520 * * 4748 3668 4312 6040 2819 2080 3377 * 6839 70 20 6207 * 2716 238 0 * 7675 1522 2614 K 71 2935 * 5223 4827 5479 4642 6718 4124 3666 6431 6374 3118 * 6076 4057 4097 3063 2737 5632 4756 71 40 5673 7053 0 * * * 7785 1570 0 V 72 4494 * 5860 2856 5813 * 6372 4870 5149 6083 * 4836 * 5859 4625 3108 1378 3737 * 5336 72 19 * 6286 * * * 0 7778 0 1000 I 73 5802 * * 6445 2382 6850 6584 2012 * 3229 5805 * * 6990 5884 * 4516 2050 5588 4148 73 0 * * * * 1388 695 7708 0 1972 R 74 4087 * 5335 2324 5409 * 6030 4671 4831 4758 * 4823 6083 5352 3222 3690 2299 4649 3960 * 74 7 * 7640 * * 0 * 7783 0 1527 F 75 6073 * * * 1035 * 4116 4135 * 2659 * * * 5889 * 6412 4539 3306 5197 5373 75 80 6801 4483 0 * 0 * 7792 1000 1000 T 76 4238 * 5387 5572 5290 6553 * 4271 3854 6917 * 6627 3685 5101 3875 6020 1232 3611 * 5131 76 30 6258 7106 0 * * 0 7707 1629 2803 P 77 2118 * * 6841 2322 6020 * 4602 6218 6348 * 4916 1566 * * 5988 5677 3787 * * 77 18 * 6316 * * 211 2875 7711 0 2891 Q 78 5804 * 2204 3069 * 6876 * 6716 3568 3070 * 3379 4029 4756 7009 3662 3394 4780 * 6403 78 14 6651 * 0 * 1070 933 7759 1000 1560 E 79 4315 * 4888 2680 * 5384 5747 6876 1868 * 6995 3508 6389 3930 3882 4890 2873 6431 * 6371 79 29 * 5666 * * 0 * 7753 0 1000 L 80 2256 * 6067 3590 * * * 6039 4692 6612 * * 1265 6720 * 3715 3805 4179 * * 80 13 6808 * 0 * 1000 1000 7754 1000 1066 G 81 * * 5125 * * 123 * * 5732 * * * * * 6064 * 5698 * * * 81 15 6638 * 3585 126 0 * 7766 1000 1000 R 82 6121 * 4250 2226 * * * 4270 4309 * * 4602 * 4372 3836 3714 2409 2372 * * 82 13 6777 * 3585 126 * * 7785 1000 0 H 83 * * * * 2345 * 4707 3906 * 4519 6587 * * 5879 * * * * 4564 774 83 12 6922 * 2000 415 * * 7785 1000 0 E 84 4791 * 3535 2947 6172 4098 * 5587 4573 5693 6370 3701 3009 3418 3146 5024 4280 4493 5033 5910 84 0 * * * * * * 7785 0 0 F 85 6546 * * * 1541 3811 * 3155 * 4306 5141 * * * * * * 4877 5594 1606 85 20 * 6197 * * * * 7785 0 0 S 86 3122 * 6858 4309 3971 6764 3299 4117 5567 3969 7210 * * 4045 4417 4037 3279 4363 6992 2521 86 53 6257 5444 2000 415 * 0 7579 1523 1000 C 87 * 39 * * * * * * * * * * * * * 5215 * * * * 87 284 2483 * 2131 374 1424 672 7496 4438 2152 G 88 2874 * 5384 5403 * 1207 * * * * 5043 4635 4837 3653 5536 3999 3814 * 4553 * 88 117 3684 * 2273 334 0 * 7553 2970 1493 M 89 5497 * * 5154 6069 5002 2672 3646 6501 5801 1391 * 3210 4908 * * 6836 4068 * 4415 89 100 3900 * 1859 465 * * 6869 2918 0 K 90 4555 * 4950 4436 5791 2024 2008 * 4595 * * 3242 5468 4405 6369 5605 4512 6264 * 4056 90 214 2859 * 516 1733 * * 6869 3788 0 M 91 3401 * * 4061 5590 6366 4006 5787 * 3865 1228 4180 5398 5163 5432 3963 6083 5168 * * 91 315 2768 4340 2036 403 * * 6869 3674 0 Q 92 4241 * * * 4430 5734 * 3185 * 4433 1196 * 5005 4780 * * * 3561 * 2868 92 106 6871 4004 0 * 0 * 6668 1000 2493 K 93 * * * 4611 6163 * 2747 5861 2157 6577 * 5687 6304 2707 2309 4088 3622 5865 * * 93 34 5410 * 2087 387 0 * 6661 1643 2636 G 94 5989 * * 5973 * 162 * * 5771 5995 5510 * * * * 5765 * * * * 94 0 * * * * * * 6700 0 0 S 95 3277 * 6075 5445 6064 * 6145 5033 2536 4693 4289 * * * 4150 4382 1798 2954 * 5954 95 0 * * * * * * 6700 0 0 Y 96 * * * * 3672 * * 1244 * 2209 3841 * * * * * * 2354 * 5824 96 19 6231 * 1000 1000 * * 6700 1000 0 T 97 6055 * * 3819 5510 * 5995 2016 3813 4931 6273 4544 * * 4021 5765 2349 2475 * 6223 97 0 * * * * * * 6700 0 0 V 98 * * * * * * * 4396 * * * * * * * * * 70 * * 98 0 * * * * * * 6699 0 0 V 99 * * * 4243 * 4310 * 4003 5436 3974 * 5423 * * 4887 * 1981 1194 * * 99 0 * * * * * * 6279 0 0 E 100 * * 1432 668 * * * * * * * * * * * * * * * * 100 0 * * 0 * * * 5285 0 0 //