HHsearch 1.5 NAME c4f2eA_ FAM FILE c4f2eA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4f2eA_.a3m DATE Mon Feb 4 12:09:47 2013 LENG 98 match states, 98 columns in multiple alignment FILT 109 out of 502 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.3 EVD 0.4095 -1.2805 SEQ >ss_dssp CCCSEECEEETTEEEEEEEESSSEESCEEEECTTSCEEEEEEECCCCGGGSEEEETTTTEEEECCTTSEEEEEECCCSCEEEEEEETTSCSEEEEEEC >sa_dssp ECEDEEBEDDEECABBDADADEBBECEDABAEDDCDBCAAACBDCEDECADDACAEECECECEBDDEEDDCBEBDAEEDDDBDABADEEDCDBCACAD >ss_pred CCCCCEEECCCCCEEEEEEECCCCCCCEEEECCCCCEEEEEEECCCCCCEEEEEECCCCCEEEECCCCEEEEEEECCCCEEEEEECCCCCEEEEEEEC >ss_conf 98775245468828999998671126758975998199999956787650379976667136766998699999557870698982764056899989 >Consensus gaxxxxaxxxxgxqxVxixxxxxfxPxxixVxxGxxVxlxxxnxdxxxxxxxxxxxxxxxxxxxxpGxxxtixftxxxpGxyxxxCxxxmxxGxiiVx >c4f2eA_ GAMGQKAQQKNGYQEIRVEVMGGYTPELIVLKKSVPARIVFDRKDPSPCLDQIVFPDFGVHANLPMGEEYVVEITPEQAGEFSFACGMNMMHGKMIVE >UniRef50_B0C0A3(155-259:328) Cytochrome c oxidase subunit 2 n=1 Tax=Acaryochloris marina MBIC11017 RepID=B0C0A3_ACAM1 E=7e-13 s/c=0.72 id=23% cov=94% GALSQ-AVATETVEPLQVNVDGlQYawlftYPDtgiisgELHLPANRPVTLNISARDV---IHAFWVPEFRLKQDAVPGQVTHLNFQPTKEGVYPVICAe lCGAYHGAM--- >UniRef50_B8GHL4(55-160:160) Blue (Type 1) copper domain protein n=1 Tax=Methanosphaerula palustris E1-9c RepID=B8GHL4_METPE E=1e-08 s/c=0.58 id=18% cov=89% GPTSQPSAVGQTTQVTLVSVNYAFDKTSITVPAGSHVQLTLDNQDTGIPHNVAVYTSAAASTVIFKGEVITgpkkITYTfdaPTTPGTYYFRC------- ----- >UniRef50_A0M190(532-638:654) Nitrous-oxide reductase n=13 Tax=Bacteria RepID=A0M190_GRAFK E=2e-06 s/c=0.50 id=20% cov=26% ------ARVERKGNEVHIymtMIRSHFTPDNIE------------------------------------------------------------------- - >UniRef50_A9MED1(55-121:132) Putative uncharacterized protein n=39 Tax=Rhizobiales RepID=A9MED1_BRUC2 E=1e-05 s/c=0.76 id=21% cov=30% --------------------------------------------------------ELRKEKVIAAQSETVMVIRTLDPGEYPF-------------- >UniRef50_Q81EY1(60-172:546) Copper resistance protein A n=58 Tax=Bacillus cereus group RepID=Q81EY1_BACCR E=0.0009 s/c=0.40 id=20% cov=85% -AKEEKQKLSNGV-IVPVWTFNGSSPgSEIRVKKGEKVKVTLKNELSAPVSIHWHgypvpnnmdgIP--GVTQDaVEPGKSFTYEFEANVPGTYWYHS-- ---------- >UniRef50_C1D4B3(398-508:515) Multicopper oxidase, type 3 n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D4B3_LARHH E=1e-05 s/c=0.46 id=17% cov=89% -----------NMQTYRWSINGEYYPDARpeLVTAGRRVRLEVVNDTMMFHPMHLHGHFFRVEREgmtdaahsalmdtysVPPKSRVTLAFYSDNPGRWV FHCHnmYHMVTGMLRV- >UniRef50_B8ELX4(37-132:386) Putative uncharacterized protein n=1 Tax=Methylocella silvestris BL2 RepID=B8ELX4_METSB E=5e-05 s/c=0.51 id=22% cov=93% ---SKKARAPEGAKIVSITVNaDSCNPNELSVPAGRT---VFEIVNASQRVVEWEILDgvmvLEERENIAPGITARLT-AKLNPGVFEITCGMlNNPRGK LTV- >UniRef50_B5WIV0(30-151:151) Blue (Type 1) copper domain protein n=1 Tax=Burkholderia sp. H160 RepID=B5WIV0_9BURK E=0.0008 s/c=0.37 id=19% cov=100% -SVGKPAHAKDATRTVTVTMldSMRFEPPTIAVKKNETIHFVVKNAGKVRHEMTLGSKQELKEHadmmrampdmmdhdansvTVEPGQTGDLVWRFSHAG VFDFAClQPGHfeagMKGTITVK >UniRef50_C1VFD8(219-315:315) Halocyanin domain n=1 Tax=Halogeometricum borinquense DSM 11551 RepID=C1VFD8_9EURY E=2e-06 s/c=0.55 id=17% cov=91% -------RTETNTATVTVGAEGngghfAFDPPVLKIAAGTTVEWKWSDE---GTPHNVVFKNADIKSEKLVDKPgVHFENTFDEPGTYLYACEPHgplGM KGAVIVE # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 3996 0 0 A 2 355 * * * * * * * * * * * 3721 * * 2814 * * * * 2 0 * * * * * * 5322 0 0 M 3 4135 * * 4275 * 3977 * * 3036 2156 4076 * 3995 * * 3129 3950 2469 * * 3 0 * * * * * * 5586 0 0 G 4 2559 * 4595 3485 * 1132 * * * * * * 4325 * * 2369 * * * * 4 0 * * * * * * 5988 0 0 Q 5 3615 * * 2695 * 4549 4513 * 2941 * * * * 1634 3681 4594 3244 * * * 5 57 * 4680 * * * * 6231 0 0 K 6 * * 4827 2252 * * * * 2187 4679 * * 2352 * 3254 2949 * 3921 * * 6 0 * * * * 0 * 6268 0 1000 A 7 792 * * 5065 * * * * 5283 * * 5139 * 3491 * 2761 3755 * * 5162 7 0 * * * * * * 6663 0 0 Q 8 2762 * * 3389 * 5483 4989 5080 5029 * 5306 * * 3339 2907 2500 3608 2979 * * 8 0 * * * * * * 6719 0 0 Q 9 1388 * * 3361 * 5218 5335 3397 * 3939 * * 4682 4386 * 3849 4029 3453 * * 9 0 * * * * * * 6942 0 0 K 10 2941 * 3555 2950 * 5322 * * 3250 * * * 2920 2419 3573 4557 4060 5673 * * 10 0 * * * * * * 7090 0 0 N 11 3174 * 1866 3300 * 3296 * * 5001 * * 2699 * 4028 * 3874 3368 * * * 11 44 5073 * 1585 585 * * 7117 1575 0 G 12 3594 4880 4174 * * 740 * * * * * 3543 5425 * * 3966 4157 * * * 12 0 * * * * * * 7208 0 0 Y 13 4328 * 6056 5028 * 4562 4944 4441 5917 5831 5489 * 4163 5855 4241 3931 2654 1684 * 3929 13 45 * 5026 * * * * 7239 0 0 Q 14 4246 * 4350 4166 * * 6195 6137 3601 * * 3728 * 1222 3302 6053 4223 4586 5927 * 14 50 5934 5817 1585 585 0 * 7262 1000 1709 E 15 6498 * * 1896 * * * 4104 3972 5096 * 5465 5249 3557 5202 4305 2362 2982 * 4785 15 0 * * * * 0 * 7340 0 1073 I 16 3652 * * * * * * 2042 * 5368 * * * * 5694 * 5146 815 * 4735 16 44 6138 5966 2807 222 * * 7388 1000 0 R 17 4929 6076 4614 2484 6447 * 5554 5868 3433 4733 5448 4777 5397 4865 3969 4633 2042 3857 * 5694 17 18 * 6323 * * * 0 7370 0 1000 V 18 6497 * * * * * * 1719 * 3122 3475 * * * * 4617 4969 1480 4759 6365 18 103 6402 4136 1585 585 0 * 7361 1000 1743 E 19 5444 * 5437 3060 * 4058 * 6436 3929 6045 6684 4642 6371 4597 3421 4074 1722 3334 6179 6677 19 170 5353 3527 911 1095 355 2197 7356 1710 2837 V 20 2308 * 6333 6454 5637 4789 * 2404 5867 3739 5094 * 5390 * * 6450 4159 1886 * 4450 20 237 2723 * 417 1995 0 * 7411 4598 3706 M 21 6581 * 1852 2748 6248 5339 6562 * 3613 * 6787 2224 * 4728 4149 4202 4230 6837 * * 21 162 3238 * 792 1243 * * 7412 3887 0 G 22 6574 * 2736 6342 4301 1541 4239 6255 4845 6370 4867 4772 6489 * 5584 3832 * * 6040 2928 22 202 2934 * 512 1743 * * 7412 4499 0 G 23 2580 * 4249 4725 * 1525 6115 * 3608 6752 * * * 5332 3267 3531 3958 6703 * * 23 142 3594 6503 966 1034 * * 7424 3758 0 Y 24 * 6129 * 6386 854 * 5537 4593 * 6404 * * * * 6494 6535 * 6178 * 1689 24 56 4716 * 1396 689 0 * 7517 2557 1000 T 25 5804 6010 3792 2529 5511 6430 5851 5667 3813 6772 4491 4901 4921 4654 5914 2639 2969 5419 * 3452 25 27 5735 * 523 1718 * * 7521 1523 0 P 26 4931 * * * * 4928 * 6163 6216 * * * 238 5771 * * 5155 6271 * * 26 15 6557 * 0 * * * 7519 1000 0 E 27 2245 * 2654 3963 * 5638 * 5826 3452 * 6674 3469 3529 5331 4289 2720 6216 6801 * * 27 39 7071 5717 2585 263 * * 7519 1000 0 L 28 4637 6529 4774 2216 * * 5653 4920 3854 5048 6169 4473 5841 4418 3274 3980 2544 3729 * 6929 28 0 * * * * 0 * 7505 0 1587 I 29 * * * * 4073 * * 1160 * 2273 * * 6284 * 6088 * 4858 2355 6612 5771 29 38 5258 * 2321 322 * * 7519 1665 0 V 30 5051 * 5766 2682 6529 * 4745 5230 4238 5297 6163 6787 * 4486 3217 5091 1898 2656 * 6509 30 17 6393 * 0 * * * 7519 1000 0 L 31 3285 * * * 6166 * * 3291 5833 3001 * * * * * * * 646 * * 31 0 * * * * * * 7520 0 0 K 32 3930 * 5627 4740 * 4685 5660 * 1887 * * 4357 2051 3736 3385 4763 4319 * * * 32 0 * * * * * * 7520 0 0 K 33 1588 * * 4291 * * 6705 4768 2649 6771 * * 2720 4451 4864 5843 4835 3238 * 6480 33 0 * * * * * * 7520 0 0 S 34 * * 4992 * * 335 5882 * 5803 * * 4178 5091 * 5387 4938 * * * * 34 14 * 6649 * * * * 7520 0 0 V 35 4030 * 2905 2465 * 5445 5753 4984 3920 * * 7017 * 2710 4164 4101 2857 3790 * * 35 0 * * * * 0 * 7521 0 1000 P 36 5645 * * 4382 * * 6221 5652 2582 4941 * 5353 1984 5675 3448 3866 2160 5764 * * 36 35 * 5382 * * * * 7520 0 0 A 37 5032 * * * 5395 * * 3116 * 5076 * * * * * * 5172 477 5078 5339 37 0 * * * * * 0 7474 0 1686 R 38 6572 * 5809 3259 6711 * 6468 4857 2783 5679 7011 * * 4648 2152 5513 1889 3599 * * 38 27 * 5738 * * * 0 7474 0 1686 I 39 * * * * 3249 * * 2617 * 1455 5450 * * * * * * 2846 2286 * 39 38 6762 5906 3000 193 1068 935 7489 1000 2635 V 40 4729 * 6656 2916 * * 3982 3540 2768 5554 5860 4971 * 5173 3964 6361 2457 2579 * * 40 64 6650 4901 3700 115 871 1141 7530 1000 2509 F 41 4741 * * 6617 1859 6549 * 3817 * 2233 5418 4530 * * * * * 1943 4166 * 41 68 * 4432 * * * 0 7504 0 2905 D 42 5729 * 3936 4352 6452 6562 3897 4412 3791 5684 * 4599 * 4672 4836 3473 2158 2337 6430 * 42 72 5495 5237 1305 749 2167 363 7492 1706 3929 R 43 4388 * 3754 4533 * 4859 * 6075 4375 * * 1194 6460 6405 2997 2821 6597 * * * 43 81 * 4194 * * 1449 658 7479 0 3854 K 44 3654 * 4730 3054 5848 5584 5038 6659 2376 5340 6452 4459 4711 3859 3518 4347 4443 3189 * 6570 44 116 * 3693 * * 864 1151 7434 0 4360 D 45 4514 * 1290 3515 * 3260 * * * 6395 * 2485 5914 * 5933 4379 3986 6857 * 6364 45 54 * 4754 * * 1304 749 7454 0 4451 P 46 3085 * 3608 3580 6882 6650 5586 4849 4154 4235 5994 4404 4118 6861 5740 3010 3451 2646 * 6638 46 185 6923 3157 0 * 1125 885 7466 1000 3988 S 47 3941 * 6775 5102 5527 2794 5102 4942 4032 5443 3937 3257 * 4380 5084 2549 3217 4568 * 5884 47 156 4500 4101 2369 310 1496 632 7377 2660 4567 P 48 3499 * 4520 3467 5818 2239 6649 4799 5118 5540 5427 * 2862 5250 5213 3987 2623 * * 6341 48 43 * 5084 * * 2208 352 7376 0 4574 C 49 3913 2063 * * 7164 3990 1953 5149 5933 4464 4285 * 5200 6570 5940 * 4584 3272 * 5281 49 46 7227 5327 1585 585 603 1550 7367 1000 4468 L 50 3399 * 4532 4861 6669 5020 4497 3024 5437 3659 4707 2737 3640 6746 6472 3614 3676 3870 * * 50 0 * * * * 487 1804 7457 0 3514 D 51 5670 * 4206 3212 5608 * 1517 4524 6663 3397 3845 4253 * 4659 5761 5507 4760 4708 * 5449 51 0 * * * * 0 * 7505 0 1657 Q 52 3955 * 3825 2668 6653 2718 4075 * 4468 4280 * 3648 6672 3818 6623 3430 3813 4679 * 5949 52 7 * 7725 * * * * 7525 0 0 I 53 4606 * * 5714 1719 5456 * 2134 * 3283 * 6763 * * 6648 * 4891 2278 5392 * 53 15 6598 * 4585 61 0 * 7534 1000 1000 V 54 4174 * 3901 2961 4649 5272 3540 5120 5735 4211 6761 6600 * 6765 6494 4326 3634 1951 4859 4933 54 75 4538 7026 3516 132 * * 7525 2663 0 F 55 3977 6819 5826 * 3170 4595 * 1696 5718 3609 5351 5443 * * * 2537 4966 3595 * 6218 55 24 5896 * 2688 243 * 0 7526 1574 1000 P 56 3981 * 3356 3956 5550 4281 4094 * 3255 5492 6992 4729 1692 4546 5128 5320 5231 * 6792 5103 56 33 * 5479 * * 0 * 7526 0 1000 D 57 3570 * 2071 2884 6109 3087 6125 6693 5073 * 6529 3800 4191 5057 * 2772 5417 * 5702 * 57 56 5178 6618 2836 218 * 0 7519 2107 1720 F 58 3470 * 5005 6464 2454 3766 4745 5434 6433 1829 4780 * * 5656 5295 5715 3894 * * 3478 58 47 5483 6688 2577 265 0 * 7506 2069 2218 G 59 3954 * 3413 5586 6693 1372 5443 * 4344 4710 * 2782 * * 3539 4587 5380 * * 5855 59 87 4745 5561 2894 208 0 * 7526 2653 1000 V 60 4017 * * 3757 3275 4756 7023 2139 4409 4613 5866 6642 * 5474 4458 5627 4596 2032 * * 60 37 5310 * 2290 330 1511 623 7532 1983 1909 H 61 4400 * 3243 2139 7471 6959 4587 * 2909 6411 6471 3411 6641 4527 3830 3107 4455 5652 6748 * 61 97 4499 5596 3010 191 * 0 7531 2717 1552 A 62 4041 * * 3386 5587 5540 4028 4073 2449 4209 7314 5835 6613 3065 3453 3359 4701 4584 * 5584 62 104 4027 6934 3791 108 1050 951 7516 3460 2523 N 63 4850 * 2471 2993 4695 5013 5074 4949 5473 4448 4752 3524 4513 7252 5176 4351 3351 3457 * 5697 63 148 3494 6805 3091 180 0 * 7515 3882 2084 L 64 3826 * 6067 * 4261 * * 2285 5273 1697 * * 6466 * 6544 4431 4177 2327 * * 64 37 6163 6465 2395 304 * 0 7530 1480 1000 P 65 2551 * 5774 3932 4677 5707 6549 3898 4158 3545 5758 4919 2422 4759 4189 4487 6718 3576 * * 65 34 6232 6642 2585 263 * 0 7516 1000 1513 M 66 4427 * 6700 4744 6229 4293 * * 3963 3577 6219 * 1017 6601 5589 3793 4476 5280 * 6286 66 29 5669 * 1323 736 531 1700 7504 1592 2098 G 67 * * 3816 * 6070 608 * * 5517 * * 3271 * 4144 5959 4983 * 5131 * * 67 29 6767 6543 3000 193 0 * 7523 1000 1000 E 68 4428 * 5149 1803 7063 3707 8382 6250 2744 * 6591 6651 6056 3240 3725 3435 4788 5461 * 5561 68 14 * 6714 * * * 0 7514 0 1000 E 69 5298 * 4460 3756 6629 4119 * 5590 4313 6501 6863 3745 4910 4657 4314 2980 1859 3783 * 5388 69 46 6830 5485 0 * * 0 7507 1000 1544 Y 70 2918 * 4805 4582 4057 4966 6594 4407 4212 5083 * 3967 * 6353 5679 3726 2875 2407 6661 4291 70 48 * 4940 * * 0 * 7483 0 2639 V 71 5570 * 5002 3144 6244 6443 5963 4268 4988 * * 6050 * 5745 4609 3196 1251 3608 * 5349 71 33 6114 6937 2000 415 658 1448 7509 1000 2124 V 72 5909 * * * 2776 * 6452 1990 * 2693 5433 * * 6739 4933 * 5624 2116 6631 3422 72 28 5710 * 2324 321 0 * 7533 1695 1702 E 73 4546 * 5418 1956 4742 * 4983 6657 3969 * * 4282 6816 5768 3995 3416 2284 4069 4912 * 73 55 6066 5461 3108 178 * * 7533 1787 0 I 74 5627 * * * 1002 * 4123 3524 6274 3241 * 6880 * * * 5535 * 2978 5667 4610 74 104 5508 4402 684 1405 0 * 7520 1691 1671 T 75 4071 * 5312 4345 6268 4779 6207 4234 3891 * * 6793 4440 5835 4218 * 1119 3950 * 5002 75 76 4531 6963 940 1062 * 0 7526 2598 2990 P 76 1846 * * * 2306 7278 * 6746 5419 4818 * 5840 1499 * * 6071 6422 4406 * * 76 17 * 6455 * * 228 2774 7527 0 3080 E 77 4945 * 2185 3412 * 5148 6471 6552 4342 3022 * 3380 3841 5373 7219 4054 3092 4133 * * 77 0 * * * * 1000 1000 7523 0 1446 Q 78 3605 * 4986 2819 * 6657 5077 6820 1958 * 7002 4186 5488 3302 3345 5505 3291 5622 * 6744 78 0 * * * * 0 * 7522 0 1000 A 79 2397 * 6257 3103 * * * * 4894 6505 * * 1087 6872 6577 4047 4399 4708 * * 79 16 * 6526 * * * * 7533 0 0 G 80 * * * * * 0 * * * * * * * * * * * * * * 80 0 * * * * 0 * 7519 0 1000 E 81 6201 * 3704 2310 * * * 4507 4809 6192 * 5002 * 4775 4013 4125 1799 2832 * * 81 0 * * * * * * 7535 0 0 F 82 * * * * 2162 * 4427 5583 * 4900 6723 * * 6071 * * * 5090 4852 768 82 0 * * * * * * 7535 0 0 S 83 4383 * 3202 3309 4953 4897 * 5369 5308 4048 * 4494 2893 3910 2867 4743 4483 4082 5769 5336 83 0 * * * * * * 7524 0 0 F 84 * * * * 1416 5109 * 3394 * 4819 4652 * * * * * * 4607 6392 1423 84 34 6207 6656 1000 1000 * * 7524 1000 0 A 85 3401 * 6916 4214 3814 * 2839 3267 6901 3573 6938 7267 6505 4519 4728 3534 3762 5258 5992 2976 85 10 * 7165 * * * 0 7507 0 1000 C 86 * 126 * * 6091 5014 * * * * * 6181 * * * 5380 * * * * 86 319 2335 * 2252 340 * 0 7493 4731 1392 G 87 3809 * 4072 4786 * 1713 3671 * * * 6194 4999 4755 3428 * 5907 2514 * 3595 * 87 126 3906 5868 1484 638 1000 1000 6914 3175 1392 M 88 4715 6180 * 5383 3767 6129 3332 4524 * 4180 1371 * 2923 * * * * 3896 * 4241 88 165 3209 * 2171 362 966 1035 6865 3636 1570 N 89 4198 * 4529 5121 * 1385 1930 * 4640 * * 3211 * 5350 * 5659 5389 * * 6390 89 18 6298 * 1585 585 * 0 6859 1000 1000 M 90 3830 * 5115 4710 * 5381 5162 4393 * 4166 1158 4935 2947 * 5326 * 5054 4583 * * 90 629 1831 3795 1042 959 * 0 6859 5131 1000 M 91 4884 * * * 4003 5847 * 3095 * 5317 1356 * 4161 4510 * * * 3182 * 2801 91 111 6921 3919 0 * 0 * 6829 1000 3375 H 92 6345 * * 5040 5460 * 2831 6076 2395 * * 4911 6374 3103 2212 5228 2867 6083 * 4923 92 59 4647 * 2322 322 0 * 6947 1704 2712 G 93 4241 * * * * 108 * * * * * * * 5676 * * * * * * 93 0 * * * * * * 6861 0 0 K 94 3886 * * 4987 5851 * * * 2205 4035 5682 5186 * 6095 4682 3886 1650 3367 * 5518 94 0 * * * * * * 6861 0 0 M 95 * * * * 4159 * * 1691 * 1535 3734 * 5876 * * * * 2344 * * 95 0 * * * * * * 6861 0 0 I 96 * * * 5258 5859 * * 1671 4311 5673 * 4676 * * 4511 * 2658 1800 * 4509 96 0 * * * * * * 6847 0 0 V 97 3963 * * * * * * 4136 * * * * * * * * * 186 * * 97 0 * * * * * * 6841 0 0 E 98 * * * 1290 * * * * 1474 * * * * 2913 3346 * * * * * 98 0 * * 0 * * * 6182 0 0 //