HHsearch 1.5 NAME c4e71A_ FAM FILE c4e71A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4e71A_.a3m DATE Sat Mar 31 11:56:35 2012 LENG 90 match states, 90 columns in multiple alignment FILT 65 out of 69 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.0 EVD 0.4552 1.0480 SEQ >ss_dssp CCCEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTCCCSEEEEEC-CCCEECCSSCTTSCCCCCCCBHHHHTCCTTCEEEEEEC >sa_dssp ECDEBDACADBDEEEEEDCEADADCDBCACDABDCACECCEEDEDBCACCD-EEEDEACCECEDBCDECEDABAEDBEBCEECDACACDE >ss_pred CCEEEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCHHEEEEEECCCCEEEEEECCCCCCEEEEEEHHHCCCCCCCEEEEEEC >ss_conf 950399999974888763799999525389999999974218100268984399638887414768869876623279899868999979 >Consensus exxxltlxVxxxxxxxxxixVkVLdcDTItQVKeKILdaxyrxxxvdLewrxgxxxiLxDxDxtsxxwkkLNTLxhYxVxdgaxvaLsxx >c4e71A_ EYAPLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRPDSVVLEWRPSTAQILSDLDLTSQRWKRVNTLMHYNVRDGATLILSKV >UniRef50_B3RWZ7(1443-1545:1839) Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3RWZ7_TRIAD E=3e-18 s/c=0.90 id=36% cov=94% ------ISVMASIGDGQQISLKLFDCDTITQAKEKILDAIYinqpysaRPSVAEFELeavtvRHGQppyRLPMFDEDSSNEvyenGWYKLNTIGHYKITD NTTLKLHRV >UniRef50_A9UUN0(144-240:441) Predicted protein (Fragment) n=1 Tax=Monosiga brevicollis RepID=A9UUN0_MONBE E=2e-08 s/c=0.62 id=36% cov=96% ----QTVEVTARLSDGTTISTTCLDCDTISQVTAKLrrhheseVEKTVLSELIDGVLREdGSGRILQDVDETSLVTARsvqLNTLRHYGlVRAVSCTILS R- >UniRef50_UPI0000E4A4A2(1410-1511:1796) PREDICTED: similar to Plexin-A4 n=4 Tax=Strongylocentrotus purpuratus RepID=UPI0000E4A4A2 E=2e-18 s/c=0.92 id=34% cov=99% EFEDVTLQIVDKEHKVLE-QVKVLDVDTITQAKQKILDAVYckrqtaqqlRSNEVDLVLLNGcmGRLVLKDRDpitETRGHWIKANTIKAYKISNGSSVA IVK- >UniRef50_UPI0000E4A226(971-1066:1324) PREDICTED: similar to four domain-type voltage-gated ion channel alpha-1 subunit n=2 Tax=Strongylocentrotus purpuratus RepID=UPI0000E4A226 E=4e-15 s/c=0.86 id=31% cov=97% EFHSLGLDVVDEDGQV-YLHVNVLNVDSVKQVKKKVLDCAWRRgycllprdvDAVDLVLVQThKQSILLRETSEAQGKTIANTMNSYGIQDEYRVAL--- >UniRef50_UPI000180B222(964-1065:1372) PREDICTED: similar to plexin A2, partial n=2 Tax=Ciona intestinalis RepID=UPI000180B222 E=2e-17 s/c=0.88 id=34% cov=98% EHRTITLRVnnYLSELDIPDFAVKVLSCDSVSQVKRKILDVAYmnlpysgrpHPAEVDIEWRQTRGSVtLRDEEPSAnngDNLMQVHTLEYYQISDGSHV SI--- >UniRef50_Q5RGW1(682-785:1056) Novel protein similar to vertebrate plexin C1 (PLXNC1) (Fragment) n=2 Tax=Danio rerio RepID=Q5RGW1_DANRE E=3e-16 s/c=0.83 id=36% cov=96% DFEPLKLKVVFAVGTGEEISesleVIALTCDTIQQVKEKILQTFQRKfgfrytqqiRDIEIEYeKEGKFVMLQEVDDTSeirGHVTMLNTLKHYQVGDGA CI----- >UniRef50_O45657(1370-1473:1766) Plexin-2 n=2 Tax=Caenorhabditis RepID=PLX2_CAEEL E=2e-14 s/c=0.77 id=33% cov=99% DTKTLKIRVIPFEKCDESIDLEVHACDAICQVKQKVASAVYRetPYSqrpritqFELKYKCPKRGDVKLTDVlpieTLSQKKlpvKLFTLADYGISDGCT LEMS-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * E 1 * * 1425 763 * * * * * * * * * 4712 * * * * * * 1 0 * * * * * * 3857 0 0 Y 2 4006 * * * 1430 * 3614 * * * * * * * * * 3561 6230 * 1370 2 0 * * * * * * 3966 0 0 A 3 4240 6208 * 2290 * 6776 3515 * 2059 * * 4879 * 4966 2926 2621 * * * 4949 3 0 * * * * * * 3958 0 0 P 4 5512 * 5416 2668 * * * 4465 * 5844 * * 2321 5441 * 2596 1797 4100 * * 4 0 * * * * * * 3950 0 0 L 5 * * * * * * * 3784 * 1021 4288 * * 3249 4539 * * 2089 * * 5 0 * * * * * * 4032 0 0 T 6 4723 * 5402 * * 3277 * * 3689 * 5968 3912 * * 5522 * 916 3016 * * 6 23 5965 * 1000 1000 * * 4032 1000 0 V 7 * * * * * * * 2358 * 654 * * * * * * * 2697 * 6037 7 0 * * * * * * 4024 0 0 S 8 * * 3926 3374 3522 * 4143 * 4751 5447 4717 2056 * 3549 3620 2820 4784 * * 6524 8 10 7151 * 1000 1000 * * 4024 1000 0 V 9 3093 4078 * * * * 5976 3941 * * * * * * 6347 * * 453 * * 9 52 4826 * 1000 1000 * * 4024 1000 0 I 10 4442 * * 4211 6389 * 5725 2625 6934 3337 4222 6156 * 6724 * 3744 3323 1784 * 4113 10 124 4610 4586 1822 479 * * 4019 1557 0 V 11 2996 5746 3437 * 2303 3925 * 5123 * 3496 * 4876 3128 4378 * 3690 6629 3416 * * 11 117 3680 * 1485 637 0 * 4037 2142 1804 Q 12 4685 * 5536 2113 4444 4980 4247 * 4140 6079 * 4838 4239 2390 3649 3250 6156 5098 * * 12 122 4004 5725 2380 308 * * 4019 1851 0 D 13 3949 * 1730 2709 * 2805 * 4553 * 3853 * 4114 6078 * * 3449 * 4013 * * 13 54 5352 6387 1166 851 * 0 4037 1388 1000 E 14 4312 3868 3986 2825 * 1815 5583 * 3748 4848 * 6458 * 3852 4170 3467 5185 6874 * * 14 105 4352 5557 1491 634 * 0 4041 1599 1397 G 15 4026 4504 2304 3069 * 2507 4073 * 4116 4298 * 4618 * 3823 * 4129 5202 4905 * * 15 160 4035 4515 1412 680 630 1499 4020 1811 1742 V 16 3578 4712 2987 4813 * 2350 * 4735 * 6662 3634 5655 4713 * 5667 4042 3366 2931 * 5280 16 179 5070 3529 1585 585 0 * 3994 1000 1885 D 17 4985 * 2705 1807 * * 4085 * * 5376 * * 3351 2400 5702 5184 3157 * * * 17 49 4903 * 1585 585 623 1511 3915 1590 1722 A 18 5583 6486 4348 3602 * 5616 5336 * 3237 * 6735 4462 2506 3807 5610 2765 2935 5540 * 3983 18 81 4866 5609 0 * * 0 4034 1615 1000 I 19 * 5746 * 5735 4319 * * 1611 * 2196 * * * * * 4860 4675 1939 * 4942 19 21 6107 * 2585 263 0 * 4033 1000 1408 P 20 4963 * 3917 4939 6079 * 3705 5279 5528 5874 5756 * 2118 2974 * 1932 4453 * * 5091 20 38 5270 * 2000 415 * * 4070 1000 0 V 21 5708 3527 * * * * * * * 3619 5236 * * * * * 3847 481 * * 21 0 * * * * * * 4070 0 0 K 22 * * * 4648 * * * 5270 855 * * 3473 * * 2521 * 3096 * * * 22 0 * * * * * * 4070 0 0 V 23 3393 4315 * * * 6584 * 4655 * 4590 * * * * * * * 390 * * 23 0 * * * * * * 4070 0 0 L 24 * * * * 4559 * 3853 * * 360 4448 4740 * * * * * 5267 * * 24 0 * * * * * * 4104 0 0 N 25 4667 * 747 5254 * * 5895 * * * * 2632 * * 5950 3465 4222 * * * 25 0 * * * * * * 4104 0 0 C 26 * 534 * * * * * 5948 * * * * * * * * 3531 2366 6323 * 26 0 * * * * * * 4104 0 0 D 27 * * 0 * * * * * * * * * * * * * * * * * 27 24 * 5950 * * * * 4104 0 0 T 28 3937 5073 * * * * * * * * * * * * * 2546 447 * * * 28 0 * * * * * 0 4087 0 1000 I 29 * * * * * * * 514 * 5121 5073 * * * * * * 2052 * * 29 0 * * * * 0 * 4087 0 1000 S 30 5950 4154 * 4439 * 3614 * * 3457 * * * * 5398 * 1929 1243 * * * 30 0 * * * * * * 4104 0 0 Q 31 * * * 5950 * * * * * * * * * 24 * * * * * * 31 0 * * * * * * 4104 0 0 V 32 1922 * * * * * * * * * * * * * * * 5319 492 * * 32 0 * * * * * * 4104 0 0 K 33 * * * * * * * * 74 * * * * * * * 4322 * * * 33 0 * * * * * * 4104 0 0 E 34 3800 * 4257 826 * * * * 4675 6323 * * * 2869 5059 3892 5267 * * * 34 0 * * * * * * 4104 0 0 K 35 * * * * * * * * 0 * * * * * * * * * * * 35 27 5757 * 4000 93 * * 4104 1000 0 I 36 * 4793 * * * 6286 * 689 * 3354 4790 * * * * 5822 * 2479 * * 36 46 4989 * 2807 222 * * 4104 1000 0 I 37 4667 * * * 4243 * * 2921 * 467 * * * * * * * 4256 * * 37 20 * 6191 * * * * 4104 0 0 D 38 * * 568 2920 * * * * * * * 5495 * 3414 * 3696 * * * * 38 22 6025 * 3170 170 0 * 4085 1000 1000 Q 39 1070 4675 * * * 4707 * * 4256 * 6110 * * 2631 * 3382 3440 5059 * * 39 0 * * * * * * 4104 0 0 V 40 3010 * * * 2672 * * 2534 5322 3332 5400 * * * * * 4468 1567 5994 * 40 19 6229 * 3170 170 * * 4104 1000 0 Y 41 * * * * 3000 * * * 4947 4306 * * 5107 5398 * * * 4989 3941 638 41 485 1807 * 2902 207 * * 4104 3174 0 R 42 4940 * * * * * 5055 5573 1466 4501 * 5819 * 5607 1186 4956 * * * * 42 417 1995 * 2996 193 * * 4101 2792 0 P 43 2202 * * 5737 * * * * 2099 * * 3211 1790 * 3926 3887 * * * * 43 577 1602 * 3112 177 * * 4090 3071 0 D 44 3742 * 1815 2570 * 6303 3839 * 3887 * * 3958 * 5114 3891 3870 5502 * * 3808 44 141 3751 5737 2895 208 * * 4090 2079 0 S 45 2976 6647 1815 1632 * * * * * 4664 * * * * * 2674 4726 5491 * * 45 91 4034 * 2727 236 * 0 4090 1745 1000 V 46 4539 5321 * * 4659 * * 2898 * 2019 3186 * * * * * 4177 1530 * * 46 30 * 5590 * * * 0 4090 0 1000 V 47 5688 5805 707 2872 * 3717 * * * * * * * 4648 5020 * 5508 4482 * * 47 55 4748 * 1434 667 * 0 3949 1470 1554 L 48 * * * * 4936 4636 * 3532 * 327 5301 * * * * * * 5807 * * 48 27 5764 * 2565 267 * 0 3949 1219 1554 E 49 * * 5849 557 * * * * 4617 4981 * 5301 * * 5838 * * 2413 * * 49 0 * * * * * 0 3949 0 1554 W 50 * * * * 5020 * * * * 1892 * * * * * 4544 * * 802 3587 50 167 3193 * 1534 611 919 1086 3949 2313 1554 R 51 * * * 4379 5956 5860 4688 5217 2899 4767 * * * 4885 995 3741 * 4624 * 4992 51 0 * * * * * 0 3961 0 1000 P 52 5956 3824 5856 2908 * 5709 2356 * 3937 5896 4885 5684 3765 3027 5489 2770 4386 * * * 52 59 4644 * 0 * 0 * 3961 1000 1000 S 53 * * 5044 5779 * 756 * * * 4142 * 5836 3819 * * 3527 2969 * * * 53 306 2388 * 607 1542 * * 3961 2823 0 T 54 6424 * 4745 * * 2043 * * 3262 5752 * 5476 * 3537 2335 3154 3562 3612 * * 54 160 3256 * 2234 345 * * 3961 2144 0 A 55 2683 * 5232 * 5372 1750 * * 5035 * * * * 2504 2319 4026 5177 * * * 55 86 4105 * 1000 1000 * * 3961 1795 0 Q 56 * * * 5616 4386 1793 * 3745 3538 3587 4579 * * 3248 2978 3514 * 5372 * 6204 56 444 1917 * 1000 1000 * * 3961 2557 0 I 57 6351 * 4653 4822 5616 * * 1051 5966 5865 5372 * 5510 5570 * * 2930 2491 * * 57 248 2662 * 1817 482 * * 3961 2628 0 L 58 * * * * * * * * * 162 4562 * * * * * * 3970 * * 58 45 5023 * 0 * * * 3961 1000 0 S 59 6501 * * 4033 4329 * * * 3197 3447 * * 5260 1893 2962 2047 * * * 6424 59 0 * * * * * * 3961 0 0 D 60 * * 365 3343 * * * * * 4653 * 5720 * * 4631 * 5260 * * * 60 0 * * * * * * 3961 0 0 L 61 * * 4819 1482 5376 * * 3034 * 3444 * 5023 * 5260 4312 * 3590 2771 5596 6487 61 0 * * * * * * 3961 0 0 D 62 * * 197 5031 * 4137 * * * * * * * * * * 4631 * * * 62 28 5699 * 1585 585 * * 3961 1000 0 L 63 3790 * 3782 3302 * 4583 * 4959 5232 2642 * 3889 5031 * 5044 2721 5376 2619 * 5260 63 150 3337 * 2133 373 * * 3961 2386 0 T 64 * * * 4631 * * * * * * 5015 * * * * 1647 789 5023 * * 64 43 5079 * 1585 585 * * 3961 1442 0 S 65 3603 * 5023 7073 * * * * * 4653 5260 4562 * * 5699 985 2212 5007 * * 65 781 1258 * 1684 538 * * 3961 2944 0 Q 66 * * 2541 2754 * 1533 * * 2942 4293 * 4658 * 4321 * 4653 5376 * * * 66 499 1774 * 1708 527 * * 3961 2919 0 R 67 * * 3334 4193 * 1655 3597 * 5411 5696 * 3560 * 3665 2787 5308 5756 4293 * * 67 0 * * * * * * 3961 0 0 W 68 * 6117 5596 * * * * 3788 3228 5031 * * * * 4124 * 3441 3797 971 5411 68 14 6645 * 1585 585 * * 3961 1000 0 K 69 3638 5376 * * * * * 4633 1078 * 4037 * * 6117 3341 * 2597 * * 4562 69 90 4049 * 1585 585 * * 3961 1591 0 R 70 * * 5007 * * * * 4631 1401 * 3873 * 5376 3797 1375 * * * * * 70 76 4293 * 1585 585 * * 3961 1085 0 V 71 4068 * * * * * * 2615 * 553 6297 * * * * * * 3591 * * 71 46 5007 * 1000 1000 * * 3961 1000 0 N 72 * * * * 4653 * 5031 * * * 5260 196 * * * * 5023 * * * 72 0 * * * * * * 3961 0 0 T 73 * 5596 * * * * * * * * 5023 * * * * 6222 97 * * * 73 0 * * * * * * 3961 0 0 L 74 * * * * * * * 2618 * 470 3900 * * * * * * 4373 * * 74 0 * * * * * * 3961 0 0 M 75 1930 * * 4487 5865 3180 5476 * 2457 * 5240 4631 * 2576 4010 3960 * * * * 75 0 * * * * * * 3961 0 0 H 76 5699 * 3092 * * * 444 * * * * * * * * 3900 5007 * * 5031 76 0 * * * * * * 3961 0 0 Y 77 * * * 5023 5232 * * * * * * * * * * * * * * 85 77 11 7054 * 0 * * * 3961 1000 0 N 78 * * * 4283 * 1781 5596 * 1658 * * 3274 * 2416 5093 * * * * * 78 80 4204 * 0 * * * 3961 1572 0 V 79 * * * * * * * 1351 * 4035 * * * * * * * 871 * * 79 0 * * * * * * 3951 0 0 R 80 * * * * * 4275 6066 * 3497 * * * 1757 4571 2827 2234 2704 * * * 80 0 * * * * * * 3819 0 0 D 81 4609 * 605 2966 * * * * * * * 2746 * * * 5354 * * * * 81 0 * * * * * * 3819 0 0 G 82 * * * 4571 * 650 * * * * * 2612 * * * 3259 6446 4609 * * 82 0 * * * * * * 3819 0 0 A 83 813 3532 4980 * * * * * * * * * * * * 2299 4538 5354 * 4571 83 0 * * * * * * 3819 0 0 T 84 * 3916 * * * 6324 3599 3916 * 5486 * 5014 5354 4969 4571 3161 1405 2928 * * 84 0 * * * * * * 3819 0 0 L 85 * * * * * * * 2764 * 1912 3645 * * * * * 3981 1172 * * 85 0 * * * * * * 3819 0 0 I 86 1167 * * 4394 * 4120 * 3767 3908 * * * * * * 2500 4124 3910 * 6789 86 0 * * * * * * 3927 0 0 L 87 * * * * * * * 4003 * 314 3216 * * * * * * 5301 * * 87 0 * * * * * * 3883 0 0 S 88 * * * * * * 3149 * * 3978 * * * * * 807 2572 3572 * * 88 0 * * * * * * 3263 0 0 K 89 * * * * * * * * 1932 2105 * * * * 984 * * * * * 89 0 * * * * * * 2739 0 0 V 90 * * * * * * * 1723 * * * * * * * * * 520 * * 90 0 * * 0 * * * 1930 0 0 //