HHsearch 1.5 NAME c4dzuB_ FAM FILE c4dzuB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4dzuB_.a3m DATE Sat May 5 11:40:51 2012 LENG 38 match states, 38 columns in multiple alignment FILT 38 out of 42 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.4 EVD 0.5050 2.8853 SEQ >ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC >sa_dssp EDEDEDECDDDEEDCCEDDEDCDEEDDDCDEEDDECDE >ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 96799999999999999999999999999999999719 >Consensus xTWxeWerxIxnytxxIxxlLexAQxQQEkNxxeLxxL >c4dzuB_ RTWEEWDRAIAEYARRIEELIRAAQEQQRKNEEALREL >UniRef50_Q8AIH5(628-664:871) Transmembrane protein gp41 n=57 Tax=Primate lentivirus group RepID=ENV_SIVTN E=7e-09 s/c=1.66 id=45% cov=100% -TWQEWDRLVENSTGTIYSLLEKAQTQQEKNKQELLEL >UniRef50_Q90PW8(619-656:857) Env protein n=40 Tax=Primate lentivirus group RepID=Q90PW8_SIVCZ E=1e-06 s/c=1.42 id=36% cov=103% QTWLEWERNISRLEGNISVALQDAQEQHERNVHDLEKL >UniRef50_Q99FH6(623-659:837) Envelope glycoprotein n=1 Tax=Simian immunodeficiency virus RepID=Q99FH6_SIVCZ E=1e-06 s/c=1.46 id=34% cov=100% -TWKQWHERVRNYTDIIEADLVEAYDLQEENEKKLAEL >UniRef50_Q3Y659(74-105:139) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q3Y659_9HIV1 E=0.0001 s/c=1.48 id=30% cov=79% -TWMQWEKEIDNYTGIIYSLIEASKPSRKR-------- >UniRef50_Q64G87(86-114:146) Envelope glycoprotein (Fragment) n=2 Tax=Human immunodeficiency virus 1 RepID=Q64G87_9HIV1 E=6e-06 s/c=1.79 id=38% cov=76% -------KKLGNYTQVIYNLIEESQNQQEKNEQDL--- >UniRef50_P22380(679-716:821) Transmembrane protein gp41 n=133 Tax=Simian immunodeficiency virus RepID=ENV_SIVGB E=0.0004 s/c=1.20 id=26% cov=103% ETWKEWETRTDYLQQNITEMLKQAYDREQRNTYELQKL >UniRef50_B7UES4(642-676:843) Env protein n=1 Tax=Simian immunodeficiency virus - olc RepID=B7UES4_SIVCZ E=0.0007 s/c=1.29 id=25% cov=95% -TWLKWQRKVDNLTQEIDDRLTIAYQEQQRNQYELQ-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * R 1 * * * 1557 * * * * * * * * * 1673 1529 * * * * * 1 0 * * * * * * 2001 0 0 T 2 * * * * * * * * * * * * * * * * 0 * * * 2 0 * * * * * * 3152 0 0 W 3 * * * * * * * * * * * * * * * * * * 0 * 3 0 * * * * * * 3152 0 0 E 4 * * * 4299 * * 4851 4146 3250 2563 2338 * * 1374 * * * * * * 4 0 * * * * * * 3152 0 0 E 5 * * * 930 * * * * 4352 * * * * 1352 * * 4851 * * * 5 0 * * * * * * 3152 0 0 W 6 * * * * * * * * * * * * * * * * * * 0 * 6 0 * * * * * * 3152 0 0 D 7 * * 1430 1020 * * 4296 * * * * * * 4354 * 4808 * * * * 7 0 * * * * * * 3147 0 0 R 8 * * * 4262 * * * * 1963 * 4799 * * 4213 1007 * 3264 * * * 8 0 * * * * * * 3254 0 0 A 9 4276 * 4284 1849 * * 5168 * 2631 2878 * 4766 * 2712 3253 * * * * * 9 0 * * * * * * 3254 0 0 I 10 * * * * * * * 1051 * 4364 * * * * * * 4169 1275 * * 10 0 * * * * * * 3670 0 0 A 11 2643 * 1909 5761 * 5850 * * * * * 3244 * 4735 2932 1923 * * * * 11 0 * * * * * * 3670 0 0 E 12 4170 * * 4269 5444 * * * * * * 630 * * 4736 4950 * * * 2704 12 0 * * * * * * 3670 0 0 Y 13 5646 * 4732 * * * * 5299 * 1671 * * * * * 4159 * 5153 5247 1022 13 0 * * * * * * 3670 0 0 A 14 4269 * * 2659 4170 * * * * * * * * 4169 * 3293 794 * * * 14 0 * * * * * * 3670 0 0 R 15 3807 * 2379 * * 1477 * * * * * 5975 * 2507 4269 3629 4246 * * * 15 0 * * * * * * 3670 0 0 R 16 * * * 3298 * * 5406 2602 5415 3709 * 1891 * 4735 4269 * 2787 3234 * * 16 0 * * * * * * 3670 0 0 I 17 * * * * * * * 141 * * * * * * * * * 4170 4732 * 17 0 * * * * * * 3670 0 0 E 18 * * 3820 2801 4266 * 6000 * * * * * * 4231 * 2821 2757 * * 1414 18 0 * * * * * * 3670 0 0 E 19 4210 * 2344 2342 * 4033 * 5998 4373 * * 3184 * 3584 5994 3174 4338 4120 * * 19 0 * * * * * * 3670 0 0 L 20 2935 * 4210 4224 * * * 4735 * 998 4169 * * 4338 4404 3807 * * * * 20 0 * * * * * * 3670 0 0 I 21 * * * * * * * 1665 * 547 * * * * * * * * * * 21 0 * * * * * * 3670 0 0 R 22 * * * 974 * 5893 * * 3169 * * * * 2425 3728 * 4404 4210 * * 22 0 * * * * * * 3670 0 0 A 23 3057 * 3863 1480 * * * 3560 2956 4732 * 6130 * 3030 4732 * * 5209 * * 23 0 * * * * * * 3670 0 0 A 24 447 * * * * * * * * * * * * * * 1908 * * * * 24 0 * * * * * * 3670 0 0 Q 25 * * * * * * 4735 * 4637 * * * * 482 4338 * * * * 2673 25 0 * * * * * * 3670 0 0 E 26 3252 * 2860 2079 * * * 3005 * * * 2780 4637 4404 4732 5415 3707 5299 * * 26 0 * * * * * * 3670 0 0 Q 27 * * * 4404 * * * * * 4210 * * * 317 4169 4637 * * * * 27 0 * * * * * * 3670 0 0 Q 28 * * * 3251 * * 4736 * * * * * * 291 4637 * * * * * 28 0 * * * * * * 3670 0 0 R 29 * * * 365 * * * * 4637 * * 5131 * 3282 4269 * * * * * 29 0 * * * * * * 3670 0 0 K 30 * * * 3448 * * * * 1161 * * 5090 * 3795 1594 * 5131 * * * 30 0 * * * * * * 3670 0 0 N 31 * * * * * * * * * * 5014 45 * * * * * * * * 31 0 * * * * * * 3466 0 0 E 32 * * * 1196 * * * * 3496 3685 5461 * * 3554 * * 3614 2267 * * 32 0 * * * * * * 3466 0 0 E 33 * * 4289 4253 * * 2094 * 1719 * * * * 2681 5381 * * * * 2485 33 0 * * * * * * 3466 0 0 A 34 2284 * 2027 1219 * * * * 3064 * * * * * * * * * * * 34 0 * * * * * * 3453 0 0 L 35 * * * * * * * * * 166 * * * * * * * 4135 * 4267 35 0 * * * * * * 3453 0 0 R 36 4243 * * 4666 * * * * * 1323 * * * 1391 4221 * 4841 * * 4708 36 0 * * * * * * 3112 0 0 E 37 2830 * * 1376 * * * * 1567 * * * * 5335 * 3162 * * * * 37 0 * * * * * * 3044 0 0 L 38 * * * * * * * * * 0 * * * * * * * * * * 38 0 * * 0 * * * 3044 0 0 //