HHsearch 1.5
NAME  c4dxsB_
FAM   
FILE  c4dxsB_
COM   /bmm/www/servers/phyre2/HH/hhmake -i c4dxsB_.a3m 
DATE  Wed Jan  9 14:30:48 2013
LENG  26 match states, 26 columns in multiple alignment
FILT  4 out of 8 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100)
NEFF  1.2 
EVD   0.5734  6.0545 
SEQ
>ss_dssp
CTTCCTTTTSSSCCCCCSSSCCCC--
>sa_dssp
EEEEDEDEEDEEEDEEEEEEEDEE--
>ss_pred
CCCCCCHHHHHHHHEEECCCCCCCCC
>ss_conf
96420012222100012489888789
>Consensus
ctxannfarsfypmlrytngppptxx
>c4dxsB_
CTQANNFARSFYPMLRYTNGPPPTXX
>UniRef50_UPI00017B599D(6816-6839:6839) UPI00017B599D related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B599D  E=7e-07 s/c=2.30 id=84% cov=96%
CTLANNYARSFYPTLRYTNGPPPT--
>UniRef50_UPI000069E877(1839-1862:1862) Nesprin-2 (Nuclear envelope spectrin repeat protein 2) (Syne-2) (Synaptic nuclear envelope protein 2) (Nucleus and actin connecting element protein) (NUANCE protein). n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI000069E877  E=4e-09 s/c=2.60 id=88% cov=96%
CAHANNFARSFYPMLRYTNGPPPT--
>UniRef50_Q5RII0(976-999:999) Novel protein similar to vertebrate spectrin repeat containing, nuclear envelope 2 (SYNE2) (Fragment) n=2 Tax=Danio rerio RepID=Q5RII0_DANRE  E=5e-09 s/c=2.60 id=84% cov=96%
CTLSNNFARSFHPMLRYTNGPPPT--
#
NULL   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	
HMM    A	C	D	E	F	G	H	I	K	L	M	N	P	Q	R	S	T	V	W	Y	
       M->M	M->I	M->D	I->M	I->I	D->M	D->D	Neff	Neff_I	Neff_D
       0	*	*	0	*	0	*	*	*	*	
C 1    *	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1
       0	*	*	*	*	*	*	1175	0	0	

T 2    2000	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	415	*	*	*	2
       0	*	*	*	*	*	*	1175	0	0	

Q 3    *	*	*	*	*	*	2000	*	*	960	*	*	*	2082	*	*	*	*	*	*	3
       0	*	*	*	*	*	*	1175	0	0	

A 4    428	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1960	*	*	*	*	4
       0	*	*	*	*	*	*	1175	0	0	

N 5    *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	5
       0	*	*	*	*	*	*	1175	0	0	

N 6    *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	6
       0	*	*	*	*	*	*	1175	0	0	

F 7    *	*	*	*	428	*	*	*	*	*	*	*	*	*	*	*	*	*	*	1960	7
       0	*	*	*	*	*	*	1175	0	0	

A 8    0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	8
       0	*	*	*	*	*	*	1175	0	0	

R 9    *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	9
       0	*	*	*	*	*	*	1175	0	0	

S 10   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	10
       0	*	*	*	*	*	*	1175	0	0	

F 11   *	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	11
       0	*	*	*	*	*	*	1175	0	0	

Y 12   *	*	*	*	*	*	1960	*	*	*	*	*	*	*	*	*	*	*	*	428	12
       0	*	*	*	*	*	*	1175	0	0	

P 13   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	13
       0	*	*	*	*	*	*	1175	0	0	

M 14   *	*	*	*	*	*	*	*	*	*	428	*	*	*	*	*	1960	*	*	*	14
       0	*	*	*	*	*	*	1175	0	0	

L 15   *	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	15
       0	*	*	*	*	*	*	1175	0	0	

R 16   *	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	16
       0	*	*	*	*	*	*	1175	0	0	

Y 17   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	17
       0	*	*	*	*	*	*	1175	0	0	

T 18   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	18
       0	*	*	*	*	*	*	1175	0	0	

N 19   *	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	*	19
       0	*	*	*	*	*	*	1175	0	0	

G 20   *	*	*	*	*	0	*	*	*	*	*	*	*	*	*	*	*	*	*	*	20
       0	*	*	*	*	*	*	1175	0	0	

P 21   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	21
       0	*	*	*	*	*	*	1175	0	0	

P 22   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	22
       0	*	*	*	*	*	*	1175	0	0	

P 23   *	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	*	*	*	*	23
       0	*	*	*	*	*	*	1175	0	0	

T 24   *	*	*	*	*	*	*	*	*	*	*	*	*	*	*	*	0	*	*	*	24
       0	*	*	*	*	*	*	1175	0	0	

X 25   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	25
       *	*	*	*	*	*	*	1000	0	0	

X 26   3706	5728	4211	4064	4839	3729	4763	4308	4069	3323	5509	4640	4464	4937	4285	4423	3815	3783	6325	4665	26
       0	*	*	0	*	*	*	1000	0	0	

//