HHsearch 1.5 NAME c4drbC_ FAM FILE c4drbC_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4drbC_.a3m DATE Sat May 19 11:47:19 2012 LENG 106 match states, 106 columns in multiple alignment FILT 13 out of 17 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.5 EVD 0.4655 1.7566 SEQ >ss_dssp CCCSSCCHHHHHHHHHHTCCCTTSSSCEEECCCCCCTTTCCCSEEECCSSTTGGGCSSCCCCSSSCCCHHHHHHHHHHHHHHHTSSCCSSCHHHHHHHTT CCGGGC >sa_dssp EDEEDDCEDDDCDDCEEEDDDEEDDCBDDCEDDEEEEEEEEEDCDDDDEEEEDEECCEEDEDEEEECDEECDEDBDECDDDDECDEDDEDDDDCDEDCEE EEEEEE >ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH HHHHCC >ss_conf 9877418999999888754100147888744411001245777642310101222346785021020467799999999996434200001135678997 655219 >Consensus kxdgxLSxxEfxxwxxxxrlxEsdxxxxvxlpxxxfxtLxxxxxreLSLSeWrxWQxxxlPThxVxHSxRcxhfixvMelIexmrxeegxcsYexelxxx LxmeDv >c4drbC_ KKDWFLSEEEFKLWNRLYRLRDSDEIKEITLPQVQFSSLQTTGIHQLSLSEWRLWQDHPLPTHQVDHSDRCRHFIGLMQMIEGMRHEEGECSYELEVESY LQMEDV >UniRef50_UPI00017B2E6A(668-782:1918) UPI00017B2E6A related cluster n=1 Tax=Tetraodon nigroviridis RepID=UPI00017B2E6A E=5e-15 s/c=0.71 id=49% cov=97% --DGFLSSAEFSVWASTMRLGE-DEARPVlkrsqfmTLPadpqtQENPSKFPRPLSRELSLSEWRHWQHKSLPTHVIDHSARCQHFIEVMQLIDNMKEEd EGECRYEQDLLPHLHQAD- >UniRef50_UPI00016E92F1(662-756:1971) UPI00016E92F1 related cluster n=2 Tax=Takifugu rubripes RepID=UPI00016E92F1 E=2e-23 s/c=1.16 id=46% cov=80% --DGFLSSAEFSKWASTVRLRE-DEPHPVLKqsqfvslpadpPKDNLSKTQRSVSRELSLSEWRHWQHKSLPTHVINHSARCQHFIEVMELIDNMKEE-- ----------------- >UniRef50_Q4RMC8(757-815:1724) Chromosome 10 SCAF15019, whole genome shotgun sequence n=1 Tax=Tetraodon nigroviridis RepID=Q4RMC8_TETNG E=3e-06 s/c=0.89 id=37% cov=57% --DGFLSSAEFSVWASTMRLGE-DEARPV-LKRSQFMTLPADP------------------------------------------QTQGECRYEQDLLPH LHQAD- >UniRef50_UPI000194C9B7(653-766:1598) PREDICTED: similar to Fanconi anemia, complementation group M n=1 Tax=Taeniopygia guttata RepID=UPI000194C9B7 E=7e-39 s/c=1.41 id=56% cov=101% RESWSLSPEEFEIWDRLYRIKESDGIKEPVLPRVQFETLENleetppeeGAARELSLSEWSIWQNQPLPTSLVDHSDRCHLFISAMEMMELMRHQKGDCS YEQELQPHLRMEDV >UniRef50_A8QLH8(638-763:1761) Fanconi anemia M n=2 Tax=Danio rerio RepID=A8QLH8_DANRE E=1e-29 s/c=1.03 id=45% cov=100% KQDWSLSAAEQAVWSSSMRLSET-EAQPVFRPSSMLSfneeraPLCGSGVcvsgecvcvsrplRELSLWEWRHWQNRPLHTHRVQHSERCLHFTTIMELI DTLRHqeEEGDCSVQSELMKHLQMEDI >UniRef50_B7PSI7(650-765:1081) Putative uncharacterized protein n=1 Tax=Ixodes scapularis RepID=B7PSI7_IXOSC E=8e-28 s/c=1.07 id=30% cov=100% KEGGVLTRQEQLYYEAHFEVAES-AIPTVPTVSTSFVTLRGATTPEsdktaprrpaLSLSSWTPWQNSFQPTLRVSHSRKTDDYVHVMQFIENLRLTDDR MdAYGLEMKTFLRMEDV >UniRef50_Q8BGE5(560-871:2021) Fanconi anemia group M protein homolog n=10 Tax=Eukaryota RepID=FANCM_MOUSE E=1e-104 s/c=0.43 id=75% cov=101% NKDGLLSEEEFNLWSRLYRLGDSDQVKGVALPQSHFPSLQedrviqdpTTRIHQLSLSEWSLWQDRPLPTHQVDHSDRCHHFISIMKMIEGMRHEEGECS YELKIRPFLQMEDV >UniRef50_UPI0000ECBB42(409-619:1836) Fanconi anemia group M protein (EC 3.6.1.-) (ATP-dependent RNA helicase FANCM) (Protein FACM) (Fanconi anemia-associated polypeptide of 250 kDa) (FAAP250) (Protein Hef ortholog). n=2 Tax=Gallus gallus RepID=UPI0000ECBB42 E=3e-63 s/c=0.53 id=53% cov=101% HENWSLSPEEFEIWDRLYRLKENDGVKEPILPHTRFETLENLdktskpeeeAAHKLSLSEWSIWQSRPFPTSMVDHSDRCYHFISVMELIEVMRQEQGDC SYELELQPHLRIEDI >UniRef50_UPI00016E92F1(562-842:1971) UPI00016E92F1 related cluster n=2 Tax=Takifugu rubripes RepID=UPI00016E92F1 E=1e-100 s/c=0.48 id=45% cov=97% ASDGFLSSAEFSKWASTVRLREDE--PHPVLKQSQFVSLpadppkdnlsktQRSVSRELSLSEWRHWQHKSLPTHVINHSARCQHFIEVMELIDNMKEEN EvrvKCLYH--VITFLDRKRV # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 2696 * * * * * 3166 * 935 * * 3291 * * 3198 * * * * * 1 0 * * * * * * 2435 0 0 K 2 * * * 1259 * * * * 1841 * * * * 2750 * 2696 * * * * 2 0 * * * * * * 2435 0 0 D 3 * * 647 * * 2446 * * * * * 3503 * * * 3478 * * * * 3 0 * * * * * * 2502 0 0 W 4 * * * * * 785 * * * * * * * * * * * * 1252 * 4 0 * * * * * * 2502 0 0 F 5 * * * * 1137 * * * * 3702 * * * * * 1811 * 2446 * * 5 0 * * * * * * 2502 0 0 L 6 * * * * * * * * * 0 * * * * * * * * * * 6 0 * * * * * * 2502 0 0 S 7 * * * * * * * * * * * * * * * 292 2446 * * * 7 0 * * * * * * 2502 0 0 E 8 3225 * * 2240 * * * * * * * * 2490 * 2446 1644 * * * * 8 0 * * * * * * 2502 0 0 E 9 1228 * * 1360 * * * * * * * * * 2446 * * * * * * 9 0 * * * * * * 2502 0 0 E 10 * * * 0 * * * * * * * * * * * * * * * * 10 0 * * * * * * 2502 0 0 F 11 * * * * 495 * * * * * * * * 1784 * * * * * * 11 0 * * * * * * 2502 0 0 K 12 3225 * * 2490 * * * * 2891 2446 * 3702 * * * 1644 * * * * 12 0 * * * * * * 2502 0 0 L 13 * * * * * * * 2490 2519 2240 * * * * * * * 1986 * 2446 13 0 * * * * * * 2502 0 0 W 14 * * * * * * * * * * * * * * * * * * 292 2446 14 0 * * * * * * 2502 0 0 N 15 1644 * 2490 2446 * * * * * * * 3837 * * * 2444 3947 * * * 15 0 * * * * * * 2502 0 0 R 16 2446 * * * * * * * * * * * * * 1360 1228 * * * * 16 0 * * * * * * 2502 0 0 L 17 * * * * * * 2446 * * 1360 * * * * * 3225 1644 * * * 17 0 * * * * * * 2502 0 0 Y 18 * * * * 2446 * * * * * 1986 * * * * * * 2519 * 1360 18 0 * * * * * * 2502 0 0 R 19 * * * 2446 * * * * * * * * * * 292 * * * * * 19 0 * * * * * * 2502 0 0 L 20 * * * * * * * 3478 * 460 * * * * * * * 2446 * * 20 0 * * * * * * 2502 0 0 R 21 2446 * * * * 2170 * * 2042 * * * * * 2032 3225 * * * * 21 0 * * * * * * 2502 0 0 D 22 * * 2240 343 * * * * * * * * * * * * * * * * 22 335 * 2271 * * * * 2502 0 0 S 23 * * 2178 * * * * * * * * 3303 * * * 884 2881 * * * 23 571 * 1614 * * 0 * 2469 0 1233 D 24 * * 254 2629 * * * * * * * * * * * * * * * * 24 122 * 3624 * * 0 * 1984 0 1630 E 25 1974 * * 1271 * 1994 * * * * * * * 3646 * * * * * * 25 101 * 3888 * * * 0 2506 0 1000 I 26 2135 * * * * * * 1189 * * * * 2706 * * * * 2469 * * 26 0 * * * * 1028 972 2499 0 1199 K 27 * * * * * * 2939 * 1308 * * * 1971 3182 3315 * * * * * 27 0 * * * * 0 * 2503 0 1000 E 28 * * * 1677 * 3702 4147 * * * * * 1670 * 4151 * 2446 * * * 28 0 * * * * * * 2502 0 0 I 29 * * * * * * * 3837 * * * * 1782 * * * * 645 * * 29 219 3979 3688 2807 222 * * 2502 1000 0 T 30 3630 * * * 3131 * * 3467 * 3957 * * 2450 * * * 2200 2002 * * 30 0 * * * * 0 * 2513 0 1070 L 31 * * * * * * * * 3917 636 * * * * 3225 * 2446 * * * 31 99 3917 * 3459 138 * * 2502 1000 0 P 32 * * * * * * * * 2393 * * * 675 * * * * 2446 * * 32 94 3979 * 2322 322 * * 2502 1000 0 Q 33 * * * * * * 3503 * 3917 * * * * 1651 2079 1784 * * * * 33 0 * * * * * * 2502 0 0 V 34 * * 3917 3979 * * * * * * * * * * * 1418 1880 2155 * * 34 0 * * * * * * 2502 0 0 Q 35 * * * * * * 3702 * * * 3225 2948 * 1514 2708 2446 * * * * 35 0 * * * * * * 2502 0 0 F 36 * * * * 389 * * * * 2530 * * 3979 * * * * * * * 36 0 * * * * * * 2502 0 0 S 37 * * * 2490 * * * * * 3947 3608 * 3702 * * 1706 * 1777 * * 37 163 3225 * 2585 263 * * 2502 1000 0 S 38 * * * * * * * * 2948 * * * 3225 * * 1644 1173 * * * 38 0 * * * * * * 2502 0 0 L 39 * * * * 3979 * * * * 200 * * * * * * 3917 * * * 39 84 4147 * 3585 126 * * 2502 1000 0 Q 40 * 3225 * 2490 * * * * * * * * 2342 1581 2446 * * * * * 40 115 3702 * 3000 193 * * 2502 1000 0 T 41 2901 * * * * 1784 * * * * * 2042 * * 2426 * 2768 * * * 41 242 2694 * 3147 173 * * 2502 1303 0 T 42 2010 * 2901 * * 3478 * * * 3503 * * 3979 * * 2123 2768 * * * 42 133 3503 * 3170 170 * * 2502 1000 0 G 43 2490 * * * * 2048 * * * 3979 * * 2901 * 3702 * 2446 3028 * * 43 207 3209 5280 3648 120 * * 2502 1102 0 I 44 2464 * * * * * * 2221 * * * * * * * 1692 2426 3199 * * 44 166 3199 * 3700 115 * 0 2502 1000 1000 H 45 * * * * * * 2064 * * * * * 2426 * 799 * * * * * 45 0 * * * * * 0 2502 0 1000 Q 46 * * * 525 * * * * 3466 * * * * 2221 * * * * * * 46 297 2426 * 3322 152 * 0 2502 1000 1000 L 47 * * * * * * * * * 0 * * * * * * * * * * 47 0 * * * * * 0 2502 0 1000 S 48 * * * * * * * * * * * * * * * 0 * * * * 48 0 * * * * * 0 2502 0 1000 L 49 * * * * * * * * * 0 * * * * * * * * * * 49 0 * * * * * 0 2502 0 1000 S 50 * * * * * * * * * * * * * * * 166 * * 3199 * 50 0 * * * * * 0 2502 0 1000 E 51 * * * 297 * * * * * * * * * * * 2426 * * * * 51 0 * * * * * 0 2502 0 1000 W 52 * * * * * * * * * * * * * * * * * * 0 * 52 0 * * * * * 0 2502 0 1000 R 53 * * * * * * * * * * * * * * 850 1948 2426 * * * 53 0 * * * * * 0 2502 0 1000 L 54 * * * * * * 1257 2464 * 2221 * * 2426 * * * * * * * 54 0 * * * * * 0 2502 0 1000 W 55 * * * * * * * * * * * * * * * * * * 0 * 55 0 * * * * * 0 2502 0 1000 Q 56 * * * * * * * * * * * * * 0 * * * * * * 56 0 * * * * * 0 2502 0 1000 D 57 * * 2221 * * * 1692 * * * * 1374 * * * 3466 * * * * 57 0 * * * * * 0 2502 0 1000 H 58 * * * * * * 2873 * 1692 * * * * 3462 1851 2426 * * * * 58 0 * * * * * 0 2502 0 1000 P 59 * * * * 2426 * * * * * * * 987 * * 1692 * * * * 59 0 * * * * * 0 2502 0 1000 L 60 * * * * 3466 * * * * 467 * * * 2426 * * * * * * 60 0 * * * * * 0 2502 0 1000 P 61 * * * * * * 3199 * * * * * 166 * * * * * * * 61 0 * * * * * 0 2502 0 1000 T 62 * * * * * * * * * * * * * * * * 0 * * * 62 0 * * * * * 0 2502 0 1000 H 63 * * * * * * 660 * * 2426 * * * * * 2464 * * * * 63 0 * * * * * 0 2502 0 1000 Q 64 * * * * * * * * * 3462 3466 * * 2750 1471 * * 1692 * * 64 0 * * * * * 0 2502 0 1000 V 65 * * * * * * * 1692 * * * * * * * * * 534 * * 65 0 * * * * * 0 2502 0 1000 D 66 * * 1125 * * 3927 * * * * * 2467 * 3199 * 2426 * * * * 66 0 * * * * * 0 2502 0 1000 H 67 * * * * * * 0 * * * * * * * * * * * * * 67 0 * * * * * 0 2502 0 1000 S 68 * * * * * * * * * * * * * * * 0 * * * * 68 0 * * * * * 0 2502 0 1000 D 69 1692 * 1338 3199 * * * * * * * * * * 2426 * * * * * 69 0 * * * * * 0 2502 0 1000 R 70 * * * * * * * * 2426 * * * * * 297 * * * * * 70 0 * * * * * 0 2502 0 1000 C 71 * 297 * * * * * * * * * * * * * * 2426 * * * 71 0 * * * * * 0 2502 0 1000 R 72 * * 2426 * * * 2093 * * 3199 * * * 1692 3820 * * * * 3466 72 0 * * * * * 0 2502 0 1000 H 73 * * 2426 * * * 468 * * 3462 * * * * * * * * * * 73 0 * * * * * 0 2502 0 1000 F 74 * * * * 297 * * * * * * * * * * * * * * 2426 74 0 * * * * * 0 2502 0 1000 I 75 * * * * * * * 504 * * * * * * * * 3199 2426 * * 75 0 * * * * * 0 2502 0 1000 G 76 * * * 1692 * 3820 2426 * * * * * * * * 1622 3199 * * * 76 0 * * * * * 0 2502 0 1000 L 77 3462 * * * * * * 1986 * 3820 * * * * * * * 771 * * 77 0 * * * * * 0 2502 0 1000 M 78 * * * * * * * * * * 0 * * * * * * * * * 78 0 * * * * * 0 2502 0 1000 Q 79 * * * 1086 * * * * 3683 * * * * 1148 * * * * * * 79 0 * * * * * 0 2502 0 1000 M 80 * * * * 2426 * * * * 975 1712 * * * * * * * * * 80 0 * * * * * 0 2502 0 1000 I 81 * * * * * * * 137 * * 3462 * * * * * * * * * 81 0 * * * * * 0 2502 0 1000 E 82 * * 1257 782 * * * * * * * * * * * * * * * * 82 0 * * * * * 0 2502 0 1000 G 83 * * * * * 2221 * * * 3462 * 1013 * * * * 3199 3466 * * 83 0 * * * * * 0 2502 0 1000 M 84 * * * * * * * * * 1761 504 * * * * * * * * * 84 0 * * * * * 0 2502 0 1000 R 85 * * * * * * * * 1692 * * * * * 534 * * * * * 85 0 * * * * 0 * 2502 0 1000 H 86 * * * 1765 * * 1292 * * 2446 * * * 3134 * * * * * * 86 163 3225 * 1000 1000 * * 2502 1000 0 E 87 * * * 512 * * * * * * * * * 3478 * * 2257 * * * 87 210 2881 * 0 * * * 2502 1114 0 E 88 * * 2439 1003 * * * * 3469 * * 3362 * 2953 * * * * * * 88 0 * * * * * * 2498 0 0 G 89 * * 2439 3362 * 477 * * * * * * * * * * * * * * 89 148 3362 * 1585 585 * * 2498 1000 0 E 90 * * 1734 1260 * * * * 3362 * * * * * 2439 * * * * * 90 0 * * * * * * 2498 0 0 C 91 * 294 * * * * * * * * 2439 * * * * * * * * * 91 294 2439 * 0 * * * 2498 1000 0 S 92 2439 * * * * * * * * 3362 * * * * 2410 915 * * * * 92 0 * * * * * * 2498 0 0 Y 93 * * * * * * * * * * * * * * * * * 3067 * 183 93 0 * * * * * * 2498 0 0 E 94 * * * 739 * 2439 3362 * * * * * * 3067 * * * * * * 94 148 * 3362 * * * * 2498 0 0 L 95 * * * * * * * * * 868 * * * 1625 * 2966 * * * * 95 0 * * * * * 0 2428 0 1000 E 96 * * 2138 550 * * * * 3476 * * * * * * * * * * * 96 0 * * * * 0 * 2428 0 1000 V 97 * * * * * * * 2705 * 1033 2439 * * * * * * 2527 * * 97 0 * * * * * * 2498 0 0 E 98 * * * 3714 * * * 3362 1972 2410 3067 * * 2463 3594 * * * * * 98 0 * * * * * * 2498 0 0 S 99 * * * * * * * * 3067 * * * 1145 * * 2768 1828 * * * 99 0 * * * * * * 2498 0 0 Y 100 * * * * 1456 * 1033 * * * * * * * * * * * * 2768 100 0 * * * * * * 2498 0 0 L 101 * * * * * * * * * 0 * * * * * * * * * * 101 0 * * * * * * 2498 0 0 Q 102 * * 3362 * * * 2410 * * * * * * 1519 1451 * * * * * 102 0 * * * * * * 2498 0 0 M 103 * * * * * * * 3458 * * 681 * * 2410 3362 * * * * * 103 0 * * * * * * 2498 0 0 E 104 2410 * * 485 * * * * 3362 * * * * * * * * * * * 104 0 * * * * * * 2498 0 0 D 105 * * 148 * * * * * * * * * * * 3362 * * * * * 105 0 * * * * * * 2498 0 0 V 106 * * 3227 * * * * 2077 * * * * * * * * * 608 * * 106 0 * * 0 * * * 2469 0 0 //