HHsearch 1.5 NAME c4dncD_ FAM FILE c4dncD_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4dncD_.a3m DATE Sat Jul 28 13:30:14 2012 LENG 42 match states, 42 columns in multiple alignment FILT 10 out of 14 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.2 EVD 0.4872 2.9118 SEQ >ss_dssp CCSCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC >sa_dssp EEEEEEEEEEEEEEEEEEEEEDEDCDEEDDDEEDDCEEEEEE >ss_pred CCCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC >ss_conf 987731100021111124422758999988887678886439 >Consensus vxvPsWRxkxxxxxxexxEnldDxvfxKRHxklExdEkRRKR >c4dncD_ LAVPSWRDHSVEPLRDPLENLDDSVFSKRHAKLELDEKRRKR >UniRef50_A9JRX0(348-394:489) Male-specific lethal 1-like 1 n=2 Tax=Danio rerio RepID=MSL1_DANRE E=3e-07 s/c=1.20 id=72% cov=102% VEVPSWRESILEPLgqkeaSDILECLDDSVFLKRHSKLELDEKRRKR >UniRef50_Q4SFE1(312-358:453) Chromosome 2 SCAF14604, whole genome shotgun sequence n=3 Tax=Clupeocephala RepID=Q4SFE1_TETNG E=4e-06 s/c=1.12 id=63% cov=102% VAIPSWRENHIEPLCEdpsfvPPELLEDGVYLKRHMKLELDEKRRKR >UniRef50_UPI000186E914(264-307:394) conserved hypothetical protein n=1 Tax=Pediculus humanus corporis RepID=UPI000186E914 E=2e-05 s/c=1.15 id=56% cov=102% VQVPTWREKPVAPcyVMEGTENLGDDVFSKRHQRLEIDERRRKR >UniRef50_B3TDE0(394-440:533) Male-specific lethal-1-like protein n=2 Tax=Euteleostei RepID=B3TDE0_SALSA E=1e-11 s/c=1.51 id=72% cov=102% VAIPSWKENSMEPLdeeaaSDIPEMLDDSVFLKRHAKLELDEKRRKR >UniRef50_UPI000180D2BC(451-496:568) PREDICTED: similar to hampin n=1 Tax=Ciona intestinalis RepID=UPI000180D2BC E=0.0001 s/c=1.03 id=44% cov=102% LNIPTWRVKVIplenTSTESPIEAIDDESYLKRHSKFEIAEKRRKR >UniRef50_UPI000051A8B0(551-594:703) PREDICTED: similar to hampin n=1 Tax=Apis mellifera RepID=UPI000051A8B0 E=6e-10 s/c=1.48 id=53% cov=102% LEVPNWRIKIYTScyTMEGTENLDDEIFNKRHLKLENDERRRKR >UniRef50_UPI0001791475(236-279:386) PREDICTED: similar to MSL1 protein n=1 Tax=Acyrthosiphon pisum RepID=UPI0001791475 E=6e-09 s/c=1.41 id=40% cov=102% LEIPSWRVKTYSSwySMEGTENMSDDIFESRHYRLEQCEQKRKR >UniRef50_A5JPL7(679-722:814) MSL1 protein n=1 Tax=Bombyx mori RepID=A5JPL7_BOMMO E=1e-08 s/c=1.38 id=47% cov=102% VEVPRWREKPYTScyTLEGTENLDDKVFEKRHQKLEAEERRQLR >UniRef50_B0W434(324-371:510) Putative uncharacterized protein n=1 Tax=Culex quinquefasciatus RepID=B0W434_CULQU E=3e-05 s/c=1.04 id=62% cov=62% -----------------TENISDEVYMKRHAKFELDERRRKK # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * L 1 * * * * * * * * * 1051 * * * * * * * 951 * * 1 0 * * * * * * 2191 0 0 A 2 1755 * * 1125 * * * * * * * 2826 * 3262 * * * * * * 2 0 * * * * * * 2191 0 0 V 3 * * * * * * * 1024 * * * * * * * * * 976 * * 3 0 * * * * * * 2191 0 0 P 4 * * * * * * * * * * * * 0 * * * * * * * 4 0 * * * * * * 2191 0 0 S 5 * * * * * * * * * * * 3311 * * 3076 901 2028 * * * 5 0 * * * * * * 2191 0 0 W 6 * * * * * * * * * * * * * * * * * * 0 * 6 0 * * * * * * 2191 0 0 R 7 * * * * * * * * 3322 * * * * * 152 * * * * * 7 0 * * * * * * 2191 0 0 D 8 * * 3423 951 * * * 3311 * * * * * * * * * 1792 * * 8 0 * * * * * * 2191 0 0 H 9 * * * * * * 3423 * 708 * * 2300 * * * 3451 * * * * 9 0 * * * * * * 2191 0 0 S 10 * * * * * * 3277 2380 * * * * 2166 * * 2372 2760 2826 * * 10 0 * * * * * * 2191 0 0 V 11 * * * * * * * 2034 * 3451 3322 * * * * * * 2340 * 1446 11 219 2826 * 2000 415 * * 2191 1000 0 E 12 3262 * * 1367 * * * * * * * * * * * 2760 1472 * * * 12 0 * * * * * * 2191 0 0 P 13 * * * * * * * * * * * * 1023 * * 977 * * * * 13 919 1086 * 1000 1000 * * 2191 1633 0 L 14 * * * * * * * * * 1367 * * * * * 2760 1472 3262 * * 14 307 2385 * 2322 322 * * 2191 1160 0 R 15 * 3277 * 2826 * * * * * 3076 1504 * * * 3423 2385 * * * * 15 0 * * * * * * 2191 0 0 D 16 * * 1813 800 * * * * * * * * * * * 2826 * * * * 16 157 3277 * 2322 322 * * 2191 1000 0 P 17 * * * * * 1086 * 2385 * * * * 1567 * * * * * * * 17 0 * * * * * * 2191 0 0 L 18 * * * * * * * 3008 * 2521 * * 2387 * * * 971 * * * 18 0 * * * * * * 2207 0 0 E 19 * * * 0 * * * * * * * * * * * * * * * * 19 0 * * * * * * 2207 0 0 N 20 3008 3526 * * * * * * * 3373 3401 742 * * * * * * * * 20 0 * * * * * * 2207 0 0 L 21 * * * * * * * 2406 * 576 2833 * * * * * * * * * 21 0 * * * * * * 2207 0 0 D 22 * * 737 3373 * 3342 * * * * * * * * * 2288 * * * * 22 0 * * * * * * 2207 0 0 D 23 * * 0 * * * * * * * * * * * * * * * * * 23 0 * * * * * * 2207 0 0 S 24 * * 2065 1824 * 3373 * * 3143 * * * * * * 1895 * * * * 24 0 * * * * * * 2207 0 0 V 25 * * * * * * * 2095 * * * * * * * 3008 * 640 * * 25 0 * * * * * * 2207 0 0 F 26 * * * * 484 * * * * * * * * * * * * * * 1810 26 0 * * * * * * 2207 0 0 S 27 * * * 1979 * * * * * 1314 3957 3416 * * * 2426 * * * * 27 0 * * * * * * 2207 0 0 K 28 * * * * * * * * 218 * * * * * * 2833 * * * * 28 0 * * * * * * 2207 0 0 R 29 * * * * * * * * * * * * * * 0 * * * * * 29 0 * * * * * * 2207 0 0 H 30 * * * * * * 0 * * * * * * * * * * * * * 30 0 * * * * * * 2207 0 0 A 31 2020 * * * * * * * * 3416 3373 * * 2239 * 2244 * * * 2833 31 0 * * * * * * 2207 0 0 K 32 * * * * * * * * 394 * * * * * 2065 * * * * * 32 0 * * * * * * 2207 0 0 L 33 * * * * 2406 * * * * 302 * * * * * * * * * * 33 0 * * * * * * 2207 0 0 E 34 * * * 0 * * * * * * * * * * * * * * * * 34 0 * * * * * * 2207 0 0 L 35 3143 * * * * * * 2166 * 1218 * 3416 * 2833 * * * * * * 35 0 * * * * * * 2207 0 0 D 36 3008 2833 685 3143 * * * * * * * * * * * * * * * * 36 0 * * * * * * 2207 0 0 E 37 * * * 0 * * * * * * * * * * * * * * * * 37 0 * * * * * * 2207 0 0 K 38 * * * * * * * * 1030 * * * * 2833 1435 * * * * * 38 0 * * * * * * 2207 0 0 R 39 * * * * * * * * 2833 * * * * * 218 * * * * * 39 0 * * * * * * 2207 0 0 R 40 * * * * * * * * * * * * * 3143 173 * * * * * 40 0 * * * * * * 2207 0 0 K 41 * * * * * * * * 173 3143 * * * * * * * * * * 41 0 * * * * * * 2207 0 0 R 42 * * * * * * * * 3957 * * * * * 96 * * * * * 42 0 * * 0 * * * 2207 0 0 //