HHsearch 1.5 NAME c4d4wA_ FAM FILE c4d4wA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4d4wA_.a3m DATE Sat Sep 26 08:29:33 2015 LENG 61 match states, 61 columns in multiple alignment FILT 94 out of 98 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.7 EVD 0.5355 2.8470 SEQ >ss_dssp CTTCSCCSSCSSCCCSSSHHHHCCSCCSCSTTGGGCCSSCCSSCCSCSCTTSSCTTCCCCC >sa_dssp EEEDEEDEDBEEEBBDDBEACEDEEDDDEBECBEECEEEDEDEDEECDBDDDEBDDEEBED >ss_pred CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHCCHHHHCC >ss_conf 9876533101104588536722407777772101166568873111447554100464149 >Consensus gxxgxxqrxxkrxrCGxCxxCxxxeDCGxCxxCxdxxkfggxxxxkqxCxxRrClxxxxkx >c4d4wA_ GPLGSEQRMFKRVGCGECAACQVTEDCGACSTCLLQLPHDVASGLFCKCERRRCLRIVERS >UniRef50_UPI00015B5884(349-401:445) PREDICTED: similar to conserved hypothetical protein n=1 Tax=Nasonia vitripennis RepID=UPI00015B5884 E=4e-16 s/c=1.62 id=39% cov=89% GALGDKPAKKKRKRCGECIGCQRKDNCGDCAPCRNDKSHQI-------CKMRRCEKLTEK- >UniRef50_B8BUB0(227-277:1562) Predicted protein n=1 Tax=Thalassiosira pseudonana RepID=B8BUB0_THAPS E=0.0005 s/c=0.89 id=40% cov=74% ----------KRVACGHCSACKRDEDCMTCVVCVQKMeveETGEGSMKRSKCIFRKC------- >UniRef50_UPI0000F2E8F3(202-246:528) PREDICTED: similar to MBD1 n=1 Tax=Monodelphis domestica RepID=UPI0000F2E8F3 E=4e-05 s/c=1.09 id=45% cov=69% -------------GCGLCSGCQTKEDCGTCRIC--ERRGRPGLKRRWKCLQRRCLR----- >UniRef50_A5D6T4(485-546:980) Mbd1 protein n=4 Tax=Danio rerio RepID=A5D6T4_DANRE E=1e-09 s/c=1.04 id=41% cov=97% --LASRKPYKKWVPCGRCWACQTTVDCGKCVSCRNgrlRHRLNIHSRKVVKCRKRKCLHPVRR- >UniRef50_D0MXW1(275-328:750) Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0MXW1_PHYIN E=1e-12 s/c=1.37 id=35% cov=85% GTPGSRQRI---GRCGKCSGCLA-EDCMKCGHCQDMKKYGGPGLRKQSCKDRKCL------ >UniRef50_UPI00016E875E(186-240:1951) UPI00016E875E related cluster n=2 Tax=Takifugu rubripes RepID=UPI00016E875E E=2e-14 s/c=1.45 id=34% cov=92% GPFG-----YRSRRCGVCKGCNTEDDCGECINCLDKPKFGGPNTKRQCCVYKRCDQIEER- >UniRef50_Q5W7N6(436-482:1409) Cytosine-specific methyltransferase n=1 Tax=Bombyx mori RepID=Q5W7N6_BOMMO E=1e-11 s/c=1.51 id=36% cov=72% ----------RRKRCGVCEACQLP-DCGECNACRAMAKFGGHGRTKKACVRRLC------- >UniRef50_UPI0000F2E8F3(281-343:528) PREDICTED: similar to MBD1 n=1 Tax=Monodelphis domestica RepID=UPI0000F2E8F3 E=1e-09 s/c=1.03 id=30% cov=100% GPSGTAQhysSRRQNRHCGACATCLRLVDCSQCDFCQDKPKFGGCNQKHQKCRWRQCLQFAMK- >UniRef50_A0JMV2(253-296:612) LOC779091 protein (Fragment) n=1 Tax=Xenopus laevis RepID=A0JMV2_XENLA E=7e-07 s/c=1.25 id=38% cov=74% ----------KSDDCGMCQGCCREDDCEGCSVCLDKM-HNPDMDIKEKCLLRRCM------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 2508 0 0 P 2 2942 * * * * * * * * * * * 811 * * * 1737 * * * 2 0 * * * * * * 2508 0 0 L 3 * * * * 1430 * * * * 1679 * * 2403 * * 2972 * * * * 3 0 * * * * * * 3113 0 0 G 4 3193 * * * * 428 * * * * * 2761 * * * * * * * * 4 123 * 3618 * * * * 3206 0 0 S 5 * * 3371 3006 * * * * 2344 * * * * * * 1281 2554 * * * 5 0 * * * * * 0 3337 0 1000 E 6 3729 * 4159 1427 * 3932 * * 2136 * * * * * 2884 3873 * * * * 6 0 * * * * * 0 3488 0 1000 Q 7 * * * * * * 3953 * 3021 * 3214 * 4689 676 * 4647 * * * * 7 103 3855 * 1585 585 * 0 3524 1000 1000 R 8 4997 * * * * * * * 2255 * * * 3134 * 1041 2986 4910 * * * 8 0 * * * * * 0 3584 0 1000 M 9 * * * * * * * 4411 3509 3097 1681 4847 * * 2825 3632 4432 3766 * 4055 9 186 4762 3571 2585 263 0 * 3601 1000 1000 F 10 * * * 4398 1682 * 4545 * 2180 * * 4786 * 4439 2484 * 4706 * * 3682 10 0 * * * * * 0 3531 0 1404 K 11 * * * * * * * * 851 * * * * 4424 1527 4947 5677 * * * 11 23 * 5983 * * * 0 3858 0 1404 R 12 * * * * * 6147 * * 4243 * * 3203 * 5771 826 2478 5013 * 4978 * 12 0 * * * * 629 1501 3845 0 1644 V 13 5077 * 4981 * * 6101 * 5087 2451 * * 6347 * 5944 1530 5025 3157 2364 * * 13 0 * * * * * 0 3835 0 1000 G 14 3926 * 5107 * * 2385 5840 * 3609 * 5383 * 5121 5909 1006 5376 5435 * * * 14 18 6332 * 2585 263 0 * 3882 1000 1000 C 15 * 0 * * * * * * * * * * * * * * * * * * 15 0 * * * * * * 3905 0 0 G 16 * * * * * 208 * * 3774 * * 5402 * 6214 5381 * * * * * 16 0 * * * * * * 3905 0 0 E 17 4526 * 4333 2494 6299 * 4416 6176 3260 5210 4500 5175 * 3950 4763 5381 3903 2006 6435 * 17 0 * * * * * * 3905 0 0 C 18 * 0 * * * * * * * * * * * * * * * * * * 18 0 * * * * * * 3889 0 0 A 19 3185 * 3703 1676 * 4583 6265 5878 3757 * * * 5141 4371 4012 3605 4846 3719 5436 * 19 0 * * * * * * 3877 0 0 A 20 1203 * * * * 1735 * 6521 * * * 5227 2702 * * 5377 4726 6377 * * 20 0 * * * * * * 3870 0 0 C 21 * 0 * * * * * * * * * * * * * * * * * * 21 61 * 4588 * * * * 3870 0 0 Q 22 * 5068 * * * * 5655 * 4103 1830 7114 4894 * 1623 3220 5586 3880 4646 * 6734 22 46 * 5001 * * 0 * 3876 0 1707 V 23 4958 4975 * * * * * 5367 4137 5186 5367 4821 * 3778 1188 * 3305 2690 * * 23 128 * 3559 * * 0 * 3865 0 1462 T 24 * * 4089 4064 * 7064 * * 1860 3912 * 7113 3252 3294 3893 4728 2397 5441 * * 24 233 * 2743 * * 0 * 3852 0 1954 E 25 4039 * 3106 1041 * 5418 * 5526 4977 * 5253 6291 5059 5525 * * 3907 3460 * 6372 25 146 * 3378 * * 0 * 3826 0 2227 D 26 * * 556 5793 * * * * * * * 1909 4818 * * * * * * * 26 0 * * * * 0 * 3898 0 1929 C 27 * 0 * * * * * * * * * * * * * * * * * * 27 0 * * * * * * 3868 0 0 G 28 6822 * 5432 3853 * 340 * * * * 4491 6388 * * 5279 5229 * * * * 28 0 * * * * * * 3868 0 0 A 29 4013 * 4618 2267 * 4858 3782 * 2582 5964 5803 6396 * 3010 5051 4459 3560 3556 * * 29 0 * * * * * * 3868 0 0 C 30 * 0 * * * * * * * * * * * * * * * * * * 30 0 * * * * * * 3868 0 0 S 31 4233 5250 2844 5128 * 5613 4221 3869 3991 * 6498 4545 4236 * 3950 2770 3297 3189 * 5834 31 0 * * * * * * 3868 0 0 T 32 3663 6560 6352 * 2024 5652 4947 3774 * * * 2928 4316 * * 3934 4014 3762 * 2793 32 0 * * * * * * 3868 0 0 C 33 * 0 * * * * * * * * * * * * * * * * * * 33 42 * 5107 * * * * 3868 0 0 L 34 6050 5265 * * 5788 * 6384 4343 2512 1765 5094 * * 4000 2108 * 6827 3690 * * 34 47 * 4960 * * * 0 3839 0 1306 L 35 4488 5545 775 * * * 5001 * 5461 3498 * 2720 * 5186 * 5167 * * * * 35 38 5270 * 1585 585 1862 464 3927 1000 1465 Q 36 * * 5006 5412 * * * * 2173 * 1484 * * 3548 2122 5303 6146 6440 * * 36 78 * 4247 * * 526 1710 3961 0 1361 L 37 5635 * * * * * 5294 4406 1683 3654 3861 * 2651 5513 2869 4862 * 3392 * * 37 182 5123 3476 1585 585 1136 876 3947 1000 1908 P 38 5356 * * 4450 * * * * 852 5356 * * 3842 4708 4029 3096 3937 * * * 38 81 6237 4605 0 * 1638 559 3891 1000 2216 H 39 * * * * 1061 5811 2462 * * 5279 * 4238 5006 5389 * 4421 5145 * * 3150 39 136 * 3474 * * * 0 3912 0 2055 D 40 * * 3706 * * 532 * * 5406 * * 3861 5265 4055 4230 * * * * * 40 0 * * * * 2736 235 3785 0 2617 V 41 * * * 5071 * 525 * 3518 * * * * 2944 * * * * 4108 * * 41 89 * 4069 * * 2896 208 3809 0 2457 A 42 3795 5868 3590 4773 * 2977 4158 * * * * * 1150 * 4431 3169 * * * * 42 0 * * * * 3108 178 3783 0 2254 S 43 4609 * 5043 * 4820 1343 * * 6653 4232 5607 2288 * 5520 * 2405 * * * * 43 0 * * * * 1459 652 3830 0 2245 G 44 * * 4626 * * 3821 * 4113 2249 4266 5173 5021 * 3890 1942 3532 4203 5172 * 6169 44 0 * * * * 1448 659 3877 0 2024 L 45 4595 * * * * 4222 * 3684 2160 2441 2869 * * * 2900 2959 5646 * * * 45 35 5385 * 0 * * 0 3911 1000 1731 F 46 5586 * * * 4833 * 3523 * 1023 * * * * 5026 1977 4973 * 5083 * 5722 46 0 * * * * 990 1010 3911 0 1731 C 47 * 4251 * 4248 * * 6312 * 3634 * * * * 736 4488 4323 * 5114 3684 * 47 0 * * * * * 0 3950 0 1326 K 48 3781 4266 * * * 6245 * 3138 1409 * * * 6392 4492 4322 2695 3714 4841 * * 48 0 * * * * 0 * 3950 0 1326 C 49 * 0 * * * * * * * * * * * * * * * * * * 49 0 * * * * * * 3990 0 0 E 50 5804 * * 4012 * * * 2632 2290 3296 4711 * * 6303 2295 * 6353 2429 * * 50 0 * * * * * * 3990 0 0 R 51 5964 * 5135 4138 3815 * 6452 * 3041 2304 3057 5748 * 3157 3425 7116 6373 6394 4737 3651 51 0 * * * * * * 3990 0 0 R 52 * * * * * * * * 3921 * * * * * 99 * * * * * 52 0 * * * * * * 3990 0 0 R 53 6341 * * * 5800 5574 * * 1768 5668 * * * 1830 1497 * * * * * 53 21 6086 * 0 * * * 3994 1000 0 C 54 * 0 * * * * * * * * * * * * * * * * * * 54 0 * * * * * * 3994 0 0 L 55 * * 5022 3053 * * * 3464 * 711 4366 * 5623 4456 * * 6057 5796 * * 55 0 * * * * * * 3881 0 0 R 56 4542 * * 3551 * * 4475 * 2653 * * 4861 * 2542 1286 5725 * * * 4929 56 0 * * * * * * 3606 0 0 I 57 * * * * 3491 * * 1658 * 1807 4847 4297 2849 * * * * 3576 * * 57 0 * * * * * * 3553 0 0 V 58 3167 * * 4330 * * * * 2901 2565 2867 * * * 4439 4275 3714 2153 * * 58 0 * * * * * * 3573 0 0 E 59 * * 4193 1281 * * * * 2272 4688 3316 4169 * * 2921 * * * * * 59 0 * * * * * * 3484 0 0 R 60 * * * * * * * * 333 * * * * * 2279 * * * * * 60 0 * * * * * * 3201 0 0 S 61 * * * * * * * * * * * * * * * 675 1421 * * * 61 0 * * 0 * * * 1381 0 0 //