HHsearch 1.5 NAME c4d2kB_ FAM FILE c4d2kB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4d2kB_.a3m DATE Sat May 30 08:10:32 2015 LENG 80 match states, 80 columns in multiple alignment FILT 45 out of 49 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.1 EVD 0.4295 1.3068 SEQ >ss_dssp CCEEEEEEETTSCSEEEEEESSHHHHHHHHHHHTTCCTTSCEEEEETTTCCEECSHHHHHHCCTTCEEEEEETTCCCCCC >sa_dssp EECCADACCCEBECDDDBEADDCECACEDABEDCEBDEECECDABBCEDCDDAEDCEDAEEBEEDCCAABADEECECEEE >ss_pred CCCCEEEECCCCCEEEEEEECCHHHHHHHHHHHHCCCCCCCEEEEECCCCCEECCHHHHHHCCCCCEEEEEECCCCCCCC >ss_conf 98764988178773498983888999999998709886445499990689586162676317688289998177700779 >Consensus xxkPfkVxdxxRxxkxGVxAxsLxeLxxKxxxklxixxxxxxxlvLexDGTeVddEdYFxtLxxnTxlixLxxgexWxpx >c4d2kB_ GKRPLKIWDSWRNVRKGVVVGTFEELLVRGKDKLGVPASEPVRVVLECDGTQIEDGEYFRTLANNTVLLLLRQGERWLEH >UniRef50_Q6DHM1(5-80:305) DNAation factor, alpha polypeptide n=8 Tax=Clupeocephala RepID=Q6DHM1_DANRE E=1e-06 s/c=0.71 id=38% cov=96% --KPCKVCNVSRQKCYGLAVTSLDQLRIKGAESLGFCPSASVSVVLENDGTIVEDEAYFMCLPANTKFMLLDANEIWM-- >UniRef50_Q4S0S9(16-95:148) Chromosome undetermined SCAF14779, whole genome shotgun sequence n=1 Tax=Tetraodon nigroviridis RepID=Q4S0S9_TETNG E=1e-25 s/c=1.46 id=34% cov=100% -QRPFRVCCHSRETKKGVIAGTLEELKQKVCHALLLSLSAvSVSLVCEEDGTEVDTDDFLMTLPDNTTLMVLEPGQTWRPQ >UniRef50_O61464(11-87:299) DNAation factor DREP-1 n=13 Tax=Drosophila RepID=O61464_DROME E=3e-24 s/c=1.45 id=38% cov=98% -KKPFKVKDVTRNIKKAVCASSLEEIRSKVAEKFEKCDHLP-TIHLDSDGTEIDDEEYFRTLDENTELVAVFPGEHWID- >UniRef50_UPI0001791FC6(9-86:188) PREDICTED: similar to cell death activator CIDE-B n=1 Tax=Acyrthosiphon pisum RepID=UPI0001791FC6 E=4e-24 s/c=1.44 id=35% cov=99% --KPYKIIDSKREHKIGIVATSLSDFMTKAQQKLDINENEPIKVVLESDGTEIDEEDYFDTLETNTLIMILKSDQKWSPY >UniRef50_C3YR00(2-77:327) Putative uncharacterized protein n=1 Tax=Branchiostoma floridae RepID=C3YR00_BRAFL E=5e-20 s/c=1.30 id=34% cov=96% GSKPFKIRSADDSQKYGVAAQDLNDLIAKGCKVLKVPI-KGCKICLQQDGTLINSREFFQALPPLSVLVFLRKGEKW--- >UniRef50_Q29KJ1(50-118:456) GA21770 n=1 Tax=Drosophila pseudoobscura pseudoobscura RepID=Q29KJ1_DROPS E=4e-10 s/c=0.95 id=26% cov=88% --RGYKITDNERSRKYGIGANSLEVLLTKANNKF---PRQDLHIYLASDGFEVSDDEYLNSLPAQTLFIVAGPD------ >UniRef50_O76075-3(3-79:116) Isoform Gamma of DNA fragmentation factor subunit beta n=5 Tax=Catarrhini RepID=O76075-3 E=1e-12 s/c=0.96 id=31% cov=94% -QKPKSVKlRALRSPRKfGVAGRSCQEVLRKGCLRFQLPERGS-RLCLYEDGTEL-TEDYFPSVPDNAELVLLTLGQAW--- >UniRef50_Q9PZ05(2-68:111) ORF38 n=3 Tax=Betabaculovirus RepID=Q9PZ05_GVXN E=4e-10 s/c=0.98 id=28% cov=81% -SKPFKVFNSEKQT--GVMASSLADLRNAIRRTFNILEDVIPCL---ADGTRIENEEYYQSLAANeriTYLVV---------- >UniRef50_A5IZN7(98-163:185) Putative uncharacterized protein orf35 n=1 Tax=Spodoptera litura granulovirus RepID=A5IZN7_9BBAC E=3e-08 s/c=0.90 id=25% cov=74% --KPVRVYN--DTIKVGILCYSLDDLKYKISTRFGMDK-KDIVVCLD-DGTLIETEDYFKTVAD---------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1811 0 0 K 2 * * * 3995 * * * * 1768 * * * * 1546 4101 2041 * * * * 2 0 * * * * * * 3541 0 0 R 3 * * * * * * * * 911 * * * * 4878 1204 * * * * * 3 0 * * * * * * 4105 0 0 P 4 4861 * * * * 2583 * * * * * * 324 * * * * * * * 4 0 * * * * * * 4103 0 0 L 5 * 3292 * * 1084 * 4696 * 4694 5323 * * * * * * * 4037 * 1927 5 0 * * * * * * 4071 0 0 K 6 * * * * * * * * 594 4781 * * * * 1929 4694 * * * * 6 0 * * * * * * 4071 0 0 I 7 * * * * * * * 1423 * 4791 * * * * * * * 759 * * 7 0 * * * * * * 4113 0 0 W 8 * 2120 * * 4887 * * 5085 3090 * 4971 * * 5237 3273 4038 2369 5628 2975 5291 8 52 4810 * 0 * * * 4113 1000 0 D 9 * 5590 1035 * * * * * * * * 2271 * * 3801 2786 3895 * * * 9 37 * 5291 * * * * 4113 0 0 S 10 3093 4650 * 5346 * 3436 2824 4090 5202 * * 3335 5170 * * 3096 * 2545 5567 3995 10 0 * * * * * 0 4110 0 1000 W 11 * * 2444 2886 4994 * * * 2909 3990 * 2669 * 5306 * 3732 2913 * 5290 4740 11 0 * * * * 0 * 4110 0 1000 R 12 * * 4063 * * 5237 * * 3928 * * * * * 361 3854 * * * * 12 0 * * * * * * 4113 0 0 N 13 5723 * * 2823 * 5832 * * 3649 * * 3084 * 3331 3976 1923 2539 5273 * * 13 0 * * * * * * 4113 0 0 V 14 * 5336 * 4791 * 5237 4027 2703 2824 * * 4920 4810 4866 2790 5566 2795 2798 * * 14 50 * 4887 * * * * 4113 0 0 R 15 * 5232 * * * * * * 1101 5197 * * * 4853 1251 * 5309 * * * 15 0 * * * * * 0 4087 0 1000 K 16 * * * * 5087 * 4353 2622 1192 * * * * * 4389 * * 3518 * 2423 16 53 4796 * 0 * 0 * 4087 1000 1000 G 17 3622 4670 * * * 235 * * * * * * * * * 5059 * * * * 17 0 * * * * * * 4141 0 0 V 18 * * * * 5254 * * 1820 * 3309 * * * * * * * 762 * * 18 0 * * * * * * 4266 0 0 V 19 1970 5398 * * * 3912 * 4137 * 4200 3457 * * * * * 2245 2051 * * 19 0 * * * * * * 4266 0 0 V 20 357 3356 * * * 4830 * * * * * * * * * * * 3536 * * 20 0 * * * * * * 4266 0 0 G 21 4061 * 3258 4401 * 3030 5662 * 4942 * 5854 4565 * 4887 3162 2010 3103 * * 4509 21 0 * * * * * * 4266 0 0 T 22 * 3803 4046 * * * * * * * * 3416 * * * 711 2615 * * * 22 0 * * * * * * 4266 0 0 F 23 * 4830 * * 4387 * * * * 255 * * * * 4421 * * 4942 * * 23 0 * * * * * * 4266 0 0 E 24 3612 * 3245 1878 * * 3707 * 3232 * * 4887 * 2836 4529 3102 * 5378 * * 24 0 * * * * * * 4266 0 0 E 25 * * 1778 833 * * * * * * 4041 * * 5345 * 4723 * 5381 * * 25 0 * * * * * * 4266 0 0 L 26 4723 * * * 5142 * * 5398 * 265 5378 * * * * * * 4221 * * 26 29 * 5670 * * * * 4266 0 0 L 27 * * * 5056 * * * 2559 2581 2091 5126 * * * 1834 * * 3484 * * 27 0 * * * * * 0 4255 0 1000 V 28 2872 * 3465 2991 * * * 3777 5198 5702 5388 4267 * 5700 3550 2420 3174 5353 * 5316 28 0 * * * * 0 * 4255 0 1000 R 29 4973 * * * * * * 5707 428 * * 4723 * 5254 2819 * * * * * 29 0 * * * * * * 4266 0 0 G 30 1455 * * * * 1652 * 4141 * * * * * * * 5424 4642 2343 * * 30 0 * * * * * * 4266 0 0 K 31 2696 1640 * * * 5641 * * 3102 3898 5346 5381 5854 4379 3034 3553 * * * * 31 0 * * * * * * 4266 0 0 D 32 3535 4723 2820 2249 * 5917 5721 5225 2977 4245 * 4535 * 3429 4973 4491 5332 4479 * * 32 0 * * * * * * 4266 0 0 K 33 3156 * * * * * 5182 4238 959 4956 * * * * 3684 3849 3640 4907 * * 33 0 * * * * * * 4307 0 0 L 34 * * * * 1601 * * * * 577 * * * * * * * * * * 34 34 * 5433 * * * * 4307 0 0 G 35 4876 * 5237 3899 5361 2420 * * 2735 3642 4273 2119 5468 4824 * 4139 * 4860 * * 35 0 * * * * * 0 4287 0 1000 V 36 * * * * 3879 * * 1705 5426 1518 4583 * * * 4793 * * 2859 * 4744 36 309 * 2373 * * * 0 4287 0 1000 P 37 3619 3584 3542 5287 * * * * 2981 3767 * 2829 1814 * * 3911 * 4965 * * 37 102 * 3868 * * 1058 945 4181 0 2769 A 38 3145 * 3644 2090 * * * 4552 3560 3872 * 3926 2720 5643 5446 4128 5038 5147 * * 38 222 * 2810 * * 638 1485 4267 0 2458 S 39 3449 4936 2160 4788 * 4087 5197 * * * * 4007 4691 * 3296 1863 5478 5074 * * 39 196 3264 5459 0 * 626 1507 4147 1853 2775 E 40 3208 * * 2536 4707 2589 * 5214 3311 4104 * 5627 * 3067 5301 4530 4015 4086 * * 40 93 4768 5266 0 * 2047 400 4313 1207 1851 P 41 3333 * 2730 5638 * 4753 * 4900 * 3627 4373 3774 2163 5174 4543 3679 * 3554 * * 41 180 * 3092 * * 1140 873 4327 0 2077 V 42 * 2808 * * 4342 * * 3330 * 1829 * * 3881 * 4764 * * 1634 * * 42 0 * * * * 0 * 4024 0 2326 R 43 5383 5023 * * 5831 4206 4605 5069 2764 * * 5746 * * 1914 3051 2244 4656 * * 43 0 * * * * * * 4343 0 0 V 44 * * * * 3998 5069 * 1966 * 1160 * * * * * * * 2291 * * 44 81 * 4191 * * * * 4343 0 0 V 45 * 3009 * * 3853 * 3598 4988 * * * * * * * * 5123 798 * 3494 45 0 * * * * * 0 4270 0 1554 L 46 * 4145 * * 4988 * * * * 237 * * * * * * * 5390 * 4668 46 29 * 5660 * * * 0 4270 0 1554 E 47 2636 * 3168 761 * * * * * 4702 * * * 4819 * * * * * 3969 47 39 * 5212 * * 0 * 4279 0 1877 C 48 4994 4077 4281 1671 * * * 4749 * 4253 * 3160 * 3057 * 2391 4985 * * * 48 0 * * * * 0 * 4154 0 1000 D 49 * * 0 * * * * * * * * * * * * * * * * * 49 0 * * * * * * 4189 0 0 G 50 * * * * * 0 * * * * * * * * * * * * * * 50 0 * * * * * * 4189 0 0 T 51 * 5055 * * 4544 * * * * * * * * * * 4291 262 4570 * * 51 0 * * * * * * 4189 0 0 Q 52 6061 * 7142 875 * * * 3280 * 4168 5949 * * 3325 5078 6876 4992 3498 * * 52 0 * * * * * * 4189 0 0 I 53 * * * * 5029 * * 1906 * 4185 * * * * * * * 627 * * 53 170 * 3171 * * * * 4189 0 0 E 54 4913 * 1025 1656 * * * * * 5247 * 4697 * * 5386 4382 5553 * * * 54 0 * * * * 0 * 4075 0 1957 D 55 * * 864 5297 * 4617 * * * * * 5078 5055 * 5285 2860 2632 * * * 55 0 * * * * * * 4189 0 0 G 56 * * 2770 516 * 5568 * * * * * 5105 5046 * 4918 * * 4617 * * 56 0 * * * * * * 4189 0 0 E 57 4306 * 1116 1320 * * * * 4299 * * 4762 * * * * * * * * 57 0 * * * * * * 4189 0 0 Y 58 * * * * 1742 * * * * * * * * * * * * * * 512 58 60 4617 * 1585 585 * * 4189 1000 0 F 59 * * * * 352 * * * 4617 3110 * * 5055 * * * * * * 5078 59 0 * * * * * * 4189 0 0 R 60 3851 * 4943 5285 5055 * 5029 5729 3413 4052 4149 5344 5092 1643 3223 3304 * * * * 60 0 * * * * * * 4189 0 0 T 61 3393 3625 * * 4266 * * * * 3536 * 5354 * * 4762 2814 1146 5055 * * 61 0 * * * * * * 4189 0 0 L 62 3688 * * * * * * 5105 * 249 * * * * * * * 4269 * * 62 0 * * * * * * 4189 0 0 A 63 3101 * 4620 1634 * 5710 * * * * * * 1085 * 5055 * * * * * 63 0 * * * * * * 4189 0 0 N 64 2554 * 2034 4956 * 5868 * * 4578 * * 4283 2308 * 4183 2889 4295 * * * 64 0 * * * * * * 4189 0 0 N 65 * * 2501 * * 5280 5013 * * 4867 * 1104 * 1904 * * * * * * 65 46 4994 * 1585 585 * * 4154 1000 0 T 66 3510 * * * * * * 5684 * * * * * * * 4058 305 5428 * * 66 0 * * * * * * 4154 0 0 V 67 5348 4448 * 2808 * * 5701 3925 3544 2889 5774 * 5283 * * 3898 3310 2072 * 4994 67 0 * * * * * * 4154 0 0 L 68 * * * * 1694 * * 4156 * 868 * * * * * * * 3523 * * 68 0 * * * * * * 4154 0 0 L 69 * * * * * * * 1886 * 3470 1518 * * 5075 * * * 1941 * * 69 0 * * * * * * 4154 0 0 L 70 3333 5716 * * 3646 * * 3180 * 1685 4749 * * * * * * 1542 * * 70 0 * * * * * * 4154 0 0 L 71 4033 * * * * * * * * 440 * * * * 4237 * * 3031 * 5242 71 0 * * * * * * 4097 0 0 R 72 5475 * 5242 2292 3536 5000 5742 3880 5229 5664 * * * 2651 2471 4990 3579 5505 * 5656 72 0 * * * * * * 4097 0 0 Q 73 5242 * 3950 4177 * 4114 * * 2397 3921 * 4096 1592 5429 4028 3940 * * * * 73 0 * * * * * * 4097 0 0 G 74 * * 2569 4911 * 748 * * * * * 2594 * * * 4752 * * * * 74 0 * * * * * * 4097 0 0 E 75 * * 4825 1004 * * * * 5632 * * * * 1254 * 5223 * * * * 75 0 * * * * * * 4080 0 0 R 76 4750 * 6522 4113 * * 5171 4309 1210 * * 4732 * 3103 5306 3373 4655 4798 * 4960 76 0 * * * * * * 3966 0 0 W 77 * * * * * * * * * * * * * * * * * * 0 * 77 0 * * * * * * 3897 0 0 L 78 4614 * * * * * * 3485 3264 2691 2933 * * 4420 2636 3284 4288 3853 * 4342 78 0 * * * * * * 3481 0 0 E 79 * * 2778 4134 * * * * * * * * 327 * * * * * * * 79 0 * * * * * * 3381 0 0 H 80 * * * * * * 1563 * * * * 2662 * 1651 * * * * * 2434 80 0 * * 0 * * * 2341 0 0 //