HHsearch 1.5 NAME c4cykA_ FAM FILE c4cykA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4cykA_.a3m DATE Sat May 24 08:22:42 2014 LENG 41 match states, 41 columns in multiple alignment FILT 20 out of 24 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.2 EVD 0.4542 2.1449 SEQ >ss_dssp CCCCCHHHHTTSCCHHHHHTSCCGGGGTTCCSCCCCSSCCC >sa_dssp EEEEEEECBEEDEBECCEEEDEBEDDEEECDCDBEEEEEEE >ss_pred CCCCCHHHHCCCCCCEEEEEEEEEECCCCCEEECCCCCCCC >ss_conf 97437133015665216998666203678604348876679 >Consensus mdxiNxdxakxxxCrNVxIYGxCKxexxGCxFxHxxxxxsx >c4cykA_ MDKINPDWAKDIPCRNITIYGYCKKEKEGCPFKHSDNTTAT >UniRef50_A5E2Y4(3-39:794) PAB-dependent poly(A)-specific ribonuclease subunit PAN3 n=1 Tax=Lodderomyces elongisporus RepID=PAN3_LODEL E=5e-11 s/c=1.86 id=53% cov=93% ---INLDSAKDVLCKNILIYGYCKFQDKGCAFSHNKQLTT- >UniRef50_C4R100(12-46:614) Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex n=1 Tax=Pichia pastoris GS115 RepID=C4R100_PICPG E=2e-10 s/c=1.91 id=56% cov=88% ----NHDWAKDIDCKNVFIHGYCKFENKGCYFKHPSDDS-- >UniRef50_Q6CP23(13-44:656) PAB-dependent poly(A)-specific ribonuclease subunit PAN3 n=3 Tax=Saccharomycetaceae RepID=PAN3_KLULA E=2e-06 s/c=1.67 id=56% cov=78% -----PDSFKGTQCRNIIIHGYCKFENEGCQFNHGN----- >UniRef50_Q6BRV5(3-40:660) PAB-dependent poly(A)-specific ribonuclease subunit PAN3 n=3 Tax=Saccharomycetaceae RepID=PAN3_DEBHA E=5e-10 s/c=1.73 id=51% cov=95% ---INLDSAKDTFCKNVLIYGYCKYENKGCAFSHTVKPTSS >UniRef50_Q7SDP4(22-56:656) PAB-dependent poly(A)-specific ribonuclease subunit pan-3 n=4 Tax=Sordariales RepID=PAN3_NEUCR E=8e-08 s/c=1.66 id=44% cov=88% ----NRDT-KETLCRNVVIYGHCRWEDSGCTFNHDQNKAS- >UniRef50_Q4PBL2(136-165:866) Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4PBL2_USTMA E=8e-07 s/c=1.83 id=48% cov=76% ----NANASARKPCRNVAIYGNCKYQNDGCPFDH------- >UniRef50_Q9UST1(28-61:589) PAB-dependent poly(A)-specific ribonuclease subunit pan3 n=1 Tax=Schizosaccharomyces pombe RepID=PAN3_SCHPO E=0.0004 s/c=1.35 id=43% cov=85% -DLKDHSKAKRTLCRNILLYGSCKHSENGCAFRHD------ >UniRef50_A2QAQ3(22-60:664) PAB-dependent poly(A)-specific ribonuclease subunit pan3 n=22 Tax=Eurotiomycetidae RepID=PAN3_ASPNC E=9e-09 s/c=1.57 id=53% cov=73% ------ENAKDTLCRNVTIYGRCRYEDKGCAFNHD------ >UniRef50_Q5KA98(35-64:684) PAB-dependent poly(A)-specific ribonuclease subunit PAN3 n=1 Tax=Filobasidiella neoformans RepID=PAN3_CRYNE E=1e-05 s/c=1.70 id=50% cov=68% ------ETAQRI-CRNVMIYGYCKYQDQGCIYYH------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1336 0 0 D 2 * * 0 * * * * * * * * * * * * * * * * * 2 0 * * * * * * 1654 0 0 K 3 * * * * * * * * 596 1564 * * * * * * * * * * 3 0 * * * * * * 1654 0 0 I 4 * * * * * * * 526 2432 * * * * * * * 3056 * * * 4 0 * * * * * * 1898 0 0 N 5 * * 2944 * * * * * * * * 201 * * * * * * * * 5 0 * * * * * * 2222 0 0 P 6 3175 * * * * * 2189 * * 2268 4056 * 2031 * 3356 * 4066 * * * 6 0 * * * * * * 2315 0 0 D 7 * * 776 2199 * * * * * * * 3388 * * * 3283 * * * * 7 0 * * * * * * 2262 0 0 W 8 3388 * * * * * * * 3283 * * 3370 * * * 2097 2398 * 1828 * 8 100 * 3906 * * * * 2262 0 0 A 9 359 * * * 3846 * * * * * * * 4278 * * 3331 * * * * 9 0 * * * * 0 * 2209 0 1000 K 10 3508 * * * * * * * 432 * * * * 3748 3375 * * * * * 10 0 * * * * * * 2350 0 0 D 11 * * 997 3419 * 3356 * * 3908 * * * * * 2052 * * * * * 11 0 * * * * * * 2350 0 0 I 12 * * * * * * * 1631 3508 * * * * * * * 1017 3396 * * 12 112 * 3748 * * * * 2350 0 0 P 13 * * 3317 * 4460 * * * * 1072 * * 1642 4105 * * * * * * 13 0 * * * * 0 * 2181 0 1000 C 14 * 0 * * * * * * * * * * * * * * * * * * 14 0 * * * * * * 2350 0 0 R 15 * * * * * * * * 1820 * * * * * 480 * * * * * 15 0 * * * * * * 2350 0 0 N 16 * * * * * * * * * * * 0 * * * * * * * * 16 0 * * * * * * 2350 0 0 I 17 * * * * * * * 1352 * * * * * * * * * 717 * * 17 0 * * * * * * 2350 0 0 T 18 3508 * * * 3508 * * 2692 * 1267 3748 * * * * * 3024 4145 * * 18 0 * * * * * * 2350 0 0 I 19 * * * * * * * 227 * 2782 * * * * * * * * * * 19 0 * * * * * * 2350 0 0 Y 20 * * * * * * 2761 * * * * * * * * * * * * 230 20 0 * * * * * * 2350 0 0 G 21 * * * * * 0 * * * * * * * * * * * * * * 21 0 * * * * * * 2350 0 0 Y 22 * * * * 3318 * 2337 * * * * 3508 * * 4568 3666 * * * 1021 22 0 * * * * * * 2350 0 0 C 23 * 0 * * * * * * * * * * * * * * * * * * 23 0 * * * * * * 2350 0 0 K 24 * * * * * * * * 275 * * * * * 2527 * * * * * 24 0 * * * * * * 2350 0 0 K 25 * * * * 1785 * 3666 * 2507 * * * * * * * * * 4145 1327 25 0 * * * * * * 2350 0 0 E 26 * * * 744 * * * * 4162 * * * * 2311 * 2782 * * * * 26 0 * * * * * * 2350 0 0 K 27 * * 1499 3666 * * * * 3058 * * 1353 * * * * 4162 * * * 27 0 * * * * * * 2350 0 0 E 28 4788 * 3508 2086 * * * * 1351 * * 3666 * 3144 * 4145 * * * * 28 0 * * * * * * 2350 0 0 G 29 * * * * * 99 * * * * * * * * * * 3908 * * * 29 0 * * * * * * 2350 0 0 C 30 * 0 * * * * * * * * * * * * * * * * * * 30 0 * * * * * * 2350 0 0 P 31 1354 * * * * * * 3748 * * * * 1922 2986 * * 4145 * * 3508 31 0 * * * * * * 2350 0 0 F 32 * * * * 112 * * * * * * * * * * * * * * 3748 32 0 * * * * * * 2350 0 0 K 33 4625 * 3508 * * * * * 1922 * * 2101 * * 2782 2692 * * * 3748 33 0 * * * * * * 2350 0 0 H 34 * * * * * * 0 * * * * * * * * * * * * * 34 78 4253 * 0 * * * 2350 1000 0 S 35 * * 1016 4413 * 4032 * * * * * 3369 3206 * 4465 3344 4368 * * * 35 0 * * * * * * 2085 0 0 D 36 3939 * 2383 * * * * 3282 3806 * * 2808 3636 3372 4077 2992 * 3965 * * 36 0 * * * * * * 2197 0 0 N 37 * * 2231 * * 3823 * * 3793 * * 1361 * 3669 * 2505 * * * * 37 0 * * * * * * 2213 0 0 T 38 * * 1646 * * * * * 2988 3593 * 3714 3699 * * 1982 3938 * * * 38 0 * * * * * * 2251 0 0 T 39 2917 * * * * * * 3254 3527 * * 3504 3130 * * 2303 1884 * * * 39 0 * * * * * * 2260 0 0 A 40 1138 * * * * * * * * * * * * * * 1198 3185 * * * 40 0 * * * * * * 2303 0 0 T 41 * * * * * * * * * * * * * * * 1013 987 * * * 41 0 * * 0 * * * 1640 0 0 //