HHsearch 1.5 NAME c4cyjF_ FAM FILE c4cyjF_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4cyjF_.a3m DATE Sat Jun 14 08:11:56 2014 LENG 54 match states, 54 columns in multiple alignment FILT 20 out of 24 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.5 EVD 0.4990 4.1521 SEQ >ss_dssp CCTTCCCTTCCCCCCCCCCCCCHHHHHTSEEETTEEECCCCCCSCTTCCCCCCC >sa_dssp EEEEEEDEEEEEEEEDDEDEDEEEBDEDCEECEECDEDEEEDECEEEDEDEDEE >ss_pred CCCHHCHHHHHHHHCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCEEHEEEECC >ss_conf 950016188755306789865888960132257100277856640000001049 >Consensus pLlSdWPxxxxxxvxxppxpiDpxiLxsmkxxxxxgyapNpxxxrRNQvxxtrx >c4cyjF_ PLFSAWPADIISDVGAPPLQLEPSFVATLKQAEWGLYGKNTRNVRRNQVEDTRN >UniRef50_A7EAD7(284-337:916) Putative uncharacterized protein n=1 Tax=Sclerotinia sclerotiorum 1980 UF-70 RepID=A7EAD7_SCLS1 E=3e-16 s/c=1.59 id=50% cov=100% -LLSAWPSHMIFEVGAPPVKLDSNWISNPKVADWYIYGRNARkDVRRNQIENTRT >UniRef50_Q0CJU7(352-404:1159) PAB-dependent poly(A)-specific ribonuclease subunit pan2 n=26 Tax=Eurotiomycetidae RepID=PAN2_ASPTN E=3e-16 s/c=1.62 id=41% cov=100% -LFSAWPSHLVFEVGSPPAPIDTGLIPYLRPAEIGHCAPNPKKTRRYQVENTRA >UniRef50_UPI000180BC0C(365-413:1172) PREDICTED: similar to PAN2 polyA specific ribonuclease subunit homolog n=1 Tax=Ciona intestinalis RepID=UPI000180BC0C E=5e-16 s/c=1.74 id=34% cov=93% PLFSDWPKPQCTPVSRRPPPIDPELLRSMKVVHGIGYAPNPGTRRRNQV----- >UniRef50_B3S8A9(208-260:926) Putative uncharacterized protein (Fragment) n=1 Tax=Trichoplax adhaerens RepID=B3S8A9_TRIAD E=3e-06 s/c=0.99 id=22% cov=100% -LLSDWSNELTEVKDRRLAPIDPKILESMKMNNFIGYAPAPVNYKRNQAYLFRN >UniRef50_B7PQ26(348-395:1120) Ubiquitin specific protease, putative (Fragment) n=1 Tax=Ixodes scapularis RepID=B7PQ26_IXOSC E=3e-05 s/c=1.04 id=24% cov=91% -LLSDLPKEFTKYVYRRSLPIDQVILNTMKMVGSVGYAPNPGLWKRNEV----- >UniRef50_Q8SWW0(88-134:930) LD37466p n=5 Tax=Drosophila RepID=Q8SWW0_DROME E=2e-15 s/c=1.77 id=29% cov=89% --FSDWPEELLRYRYHRPKTIDPEVLSNMKMQGPIGYSPNPRTARRNQI----- >UniRef50_A8PAW6(383-421:1069) CG8232-PA, putative n=1 Tax=Brugia malayi RepID=A8PAW6_BRUMA E=4e-05 s/c=1.26 id=18% cov=74% ---SDWPEQLCIRRFRQPDPISEKVIDSMRMVQFVGYAHNPR------------ >UniRef50_Q5KHY2(380-427:1183) PAB-dependent poly(A)-specific ribonuclease subunit PAN2 n=1 Tax=Filobasidiella neoformans RepID=PAN2_CRYNE E=0.0001 s/c=1.00 id=22% cov=83% -LLSQFPSECyatsTSPLFNPPATIPQPVLSSMKMVDFVGYAPNPKELR--------- >UniRef50_UPI000179EFA3(209-251:947) Hypothetical protein. n=1 Tax=Bos taurus RepID=UPI000179EFA3 E=9e-08 s/c=1.35 id=20% cov=81% -LLSDWPAANSAPAPRRAPPVDAEILRTMKKRGEGQPPPQPIGV---------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * P 1 * * * * * * * * * * * * 0 * * * * * * * 1 0 * * * * * * 1949 0 0 L 2 * * * * * * * * * 0 * * * * * * * * * * 2 0 * * * * * * 3513 0 0 F 3 4223 * * * 1709 * * * * 643 * * * * * * * * * * 3 0 * * * * * * 3549 0 0 S 4 * * * * * * * * * * * * * * * 0 * * * * 4 0 * * * * * * 3626 0 0 A 5 1316 * 1028 * * 4406 * * * * * * * 4041 * * * * * * 5 0 * * * * * * 3626 0 0 W 6 * * * * 4041 * * * * 3277 * * * * * * * * 258 * 6 0 * * * * * * 3626 0 0 P 7 * * * * * * * * * * * * 102 * * 3876 * * * * 7 51 * 4840 * * * * 3626 0 0 A 8 1738 * * 2307 * * * * 3420 * * 3865 4295 * * 1810 * * * * 8 0 * * * * 0 * 3797 0 1000 D 9 3364 * 1834 1919 * * 2256 * * * * * 4556 3236 * * * * * * 9 0 * * * * * * 3626 0 0 I 10 * 3297 * * 3330 * * 2838 * 1382 2882 3364 * 4556 * * * * * * 10 90 4041 * 2000 415 * * 3626 1000 0 I 11 * 2864 * * * * * 2040 * 3369 4608 * * * * 2627 2482 2826 * * 11 0 * * * * * * 3626 0 0 S 12 3364 * * 3876 2256 * * 4137 2832 * * * * * 3549 1736 4556 * * * 12 0 * * * * * * 3626 0 0 D 13 * * 2062 2256 * * * * 4343 * * * 2319 * 4137 * * 3237 * 2851 13 0 * * * * * * 3626 0 0 V 14 2866 * * * * * * * 3876 4041 * * * * 3261 4719 * 757 * * 14 0 * * * * * * 3626 0 0 G 15 * * 3876 * 3089 1156 * * 4608 * 4719 * 3364 * * 4556 * * * 2767 15 0 * * * * * * 3626 0 0 A 16 1359 * * * * * 4396 * * * * 4041 * * 1175 4085 * * * * 16 73 4343 * 1000 1000 * * 3626 1000 0 P 17 * * * * * * * * * * * * 840 3399 1530 * * * * * 17 0 * * * * * * 3626 0 0 P 18 3364 * * * * * * 4343 * 3876 4608 * 526 * * 4318 * * * * 18 0 * * * * * * 3626 0 0 L 19 1986 * 4137 * * * * * 4396 3367 * * 1358 4238 * * * 3275 * * 19 0 * * * * * * 3626 0 0 Q 20 * * * * * * * * 2732 * * * 995 2290 * * 2805 * * * 20 0 * * * * * * 3626 0 0 L 21 * * * * 3950 * * 905 * 2886 * * * * * * * 1911 * * 21 0 * * * * * * 3626 0 0 E 22 * * 259 4418 * * * * * * * * 4041 * * 4137 * * * * 22 0 * * * * * * 3626 0 0 P 23 3364 * * 4137 * 4406 * * * * * * 969 2510 * 4223 4085 * * * 23 0 * * * * * * 3626 0 0 S 24 2719 * * 1665 * 4085 * * 3001 * * 3230 4041 4840 * 3373 * 4318 * * 24 0 * * * * * * 3626 0 0 F 25 * * * * 3614 * * 1172 * 2821 * * * * * * * 2599 3275 3950 25 0 * * * * * * 3626 0 0 V 26 * * * * * * * 2191 * 579 * * * * * * * 3165 * * 26 97 3950 * 0 * * * 3626 1000 0 A 27 2377 * 4137 3876 * * * 4329 4343 * * 4318 4085 * 2493 1752 * * * * 27 0 * * * * * * 3626 0 0 T 28 * * * * * * * * * * 3950 2337 * * * 1488 1635 * * 4085 28 0 * * * * * * 3626 0 0 L 29 * * * * * * * * * 2098 593 * 3275 * * * * * * * 29 0 * * * * * * 3626 0 0 K 30 * * * * * * * * 558 * * 4643 3950 * 3111 * 3320 * * * 30 0 * * * * * * 3626 0 0 Q 31 4840 * * * * * * 4608 2395 3519 1820 3950 4085 4418 4406 * * 2778 * * 31 0 * * * * * * 3626 0 0 A 32 2651 * * * * 3127 * * * * * 3876 * 3369 4086 * 2514 1611 * * 32 0 * * * * * * 3626 0 0 E 33 * * 1920 2469 * 2035 4556 * * * * 2912 * 2881 * * * * * * 33 0 * * * * * * 3626 0 0 W 34 * * * 4086 1404 3438 * 4085 * * 4406 * 4396 * * 4318 4343 3950 2705 * 34 0 * * * * * * 3626 0 0 G 35 * * * * * 1306 * 1623 * 4329 * * * * * * * 2576 * 4223 35 0 * * * * * * 3626 0 0 L 36 * * * * 4406 1022 4085 3275 * 2772 * * * 4086 * * * * * 3426 36 0 * * * * * * 3626 0 0 Y 37 * 3202 * * 3520 * * 4238 * * * * 4086 * * * * * * 531 37 0 * * * * * * 3626 0 0 G 38 860 * * * * 1545 * * * * * * 4086 * * 4396 * * * * 38 0 * * * * * * 3626 0 0 K 39 * * * * * * 4137 * 2263 * * * 554 * 4223 * * * * * 39 0 * * * * * * 3626 0 0 N 40 2912 * * * * * * * * * * 307 * 4086 * * * * * * 40 0 * * * * * * 3626 0 0 T 41 3275 * * * * * * * 3426 * * * 691 * * * 3063 3950 * * 41 0 * * * * * * 3626 0 0 R 42 3950 * * * * 2937 * 4086 3063 * 4343 * * * 1266 * 3426 3876 * * 42 167 3191 * 0 * * * 3626 1170 0 N 43 * * 3189 3902 * 1728 * * 3971 4238 * 3039 * * * * 2061 4523 * * 43 0 * * * * * * 3549 0 0 V 44 4258 * * * * * * * 2775 2338 * * * * 2950 * 2944 2185 4238 3802 44 0 * * * * * * 3549 0 0 R 45 * * * * * * * * 2430 4225 * * * 4050 513 * * * * * 45 0 * * * * * * 3239 0 0 R 46 * * * * * * * * * * * * * * 0 * * * * * 46 0 * * * * * * 3181 0 0 N 47 * * * * * * * * * * * 118 * * * * * * * 3667 47 0 * * * * * * 3181 0 0 Q 48 * * * 3815 * * * * * * * * * 106 * * * * * * 48 0 * * * * * * 3181 0 0 V 49 3615 * * * * * * 1584 * * * * * * * * * 941 * 3965 49 0 * * * * * * 3181 0 0 E 50 * * * 721 * * * * * * 3350 * * * * * * 3265 * 2385 50 0 * * * * * * 2667 0 0 D 51 * * 1218 * * * * * * 2385 * 2355 * * * 3454 * 3440 * * 51 0 * * * * * * 2667 0 0 T 52 * * * * 2385 * * * * * * * * * 3454 * 479 * * * 52 0 * * * * * * 2667 0 0 R 53 * * * * * * * * * * * * * * 0 * * * * * 53 0 * * * * * * 2667 0 0 N 54 2099 * * * * * * * * * * 1686 * * * 2070 2201 * * * 54 0 * * 0 * * * 2639 0 0 //