HHsearch 1.5 NAME c4cpgA_ FAM FILE c4cpgA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4cpgA_.a3m DATE Sat Dec 6 08:17:33 2014 LENG 69 match states, 69 columns in multiple alignment FILT 29 out of 33 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.6 EVD 0.4240 0.2591 SEQ >ss_dssp CCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHTTCCTHHHHTCCSSCHHHHHHHHTTCC >sa_dssp EEEECDDABBCBCDCDECBEEDDDEEECCDDCDECBEDDDEEDEADEEADEDDDEDDBBDDCEECEEDE >ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHCCC >ss_conf 954899999999999986204676877754899999999998487732023203886899999863389 >Consensus MsxkKxlxxaIixFLxxxxxxxxxsxdxxESLEVAiqCiexafxixxxdxxxxxxxxLxxlFxsxxxxx >c4cpgA_ MDNKKRLAYAIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTVEDSDLALPQTLPEIFEAAATGK >UniRef50_C1C0F2(2-68:333) Small glutamine-rich tetratricopeptide repeat-containing protein A n=3 Tax=Caligidae RepID=C1C0F2_9MAXI E=5e-14 s/c=1.17 id=38% cov=96% --DKRRLIFSIVEFLNSEAgdDSNAFSSEAKESLEVANQCLQSAYALSQEDEHLRTEPGLLSLFVSATS-- >UniRef50_A8WUQ6(21-84:339) C. briggsae CBR-SGT-1 protein n=2 Tax=Caenorhabditis briggsae RepID=A8WUQ6_CAEBR E=8e-14 s/c=1.22 id=29% cov=94% -TDEQNLVVSFLQFIRQKVSHNQATPEQAEALEVAIQCLEHSFALTDASYAFQPSRPILELFKSA---- >UniRef50_O13797(1-62:317) Small glutamine-rich tetratricopeptide repeat-containing protein 2 n=2 Tax=Schizosaccharomyces RepID=SGT2_SCHPO E=2e-12 s/c=1.18 id=33% cov=91% MSSNK-VTAAIIDYLKQAITTGSISEEEKESLEVAAQCIQDSFKIKPEEIKPKSGDRLVAAFE------ >UniRef50_Q54VG4(3-60:334) Small glutamine-rich tetratricopeptide repeat-containing protein n=1 Tax=Dictyostelium discoideum RepID=SGT_DICDI E=8e-11 s/c=1.17 id=39% cov=86% -SNKQKLAVSILNFLKVSMKED---AENAESLQVAVECIRDVFGVDENDSTLQVSAPLSEIF------- >UniRef50_B9WAW1(7-75:344) Small glutamine-rich tetratricopeptide repeat-containing protein, putative n=9 Tax=Saccharomycetales RepID=B9WAW1_CANDC E=1e-10 s/c=0.98 id=32% cov=94% ---NKDIALSIIDFLKQSVAKKEVAEDYAESMDVAIDCIADAFEVNKDDDskilkDVFNGKSLPELLKSTVS-- >UniRef50_C0M008(3-67:152) Receptor-like kinase binding protein (Fragment) n=5 Tax=Eukaryota RepID=C0M008_ORYSJ E=1e-07 s/c=0.88 id=36% cov=88% --SKQRLALAICDFLSASTNDGTLTADDKDSIDVAINCIAESFKVDPSDTsavqAAIGSQNLLQIY------- >UniRef50_Q12118(3-74:346) Small glutamine-rich tetratricopeptide repeat-containing protein 2 n=12 Tax=Saccharomycetaceae RepID=SGT2_YEAST E=5e-06 s/c=0.73 id=29% cov=70% -ASKEEIAALIVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGFERE--------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 2904 0 0 D 2 1301 * 4304 3684 * * * * * * * * * * * 1414 3465 * * * 2 0 * * * * * * 3478 0 0 N 3 * * 1422 * * 4212 4644 * * * * 2881 * * * 1482 * 4679 * * 3 60 4626 * 1000 1000 * * 3687 1000 0 K 4 * * * 3415 * * * 4427 950 * * 2208 * * * * * 2990 * * 4 69 4427 * 1000 1000 * * 3736 1000 0 K 5 4598 * * 4187 * * * * 553 * * 4830 * 2773 4616 * * * * * 5 111 4830 4674 1000 1000 * * 3736 1000 0 R 6 * * 3566 2574 4428 4869 * * 2217 * * 3941 * 4968 1667 * 4643 * * * 6 0 * * * * 0 * 3703 0 1000 L 7 * * * * 3468 * * 2571 * 779 4320 * * * * * * 3206 * * 7 0 * * * * * * 3724 0 0 A 8 1210 * * * * 4560 * 3227 * * * * * * * * 4734 1715 * 3712 8 0 * * * * * * 3676 0 0 Y 9 2605 * * * 2241 * * * * 2007 * * * 4695 2727 * * 3313 * 3558 9 0 * * * * * * 3676 0 0 A 10 1311 * * * * * * * * 2866 * 3874 * * * 1352 * * * * 10 0 * * * * * * 3676 0 0 I 11 * * * * 2913 * * 432 * * * * * * * * * 2988 * * 11 0 * * * * * * 3676 0 0 I 12 3712 4718 * * * * * 1523 * 2195 * * * * * * * 1646 * * 12 0 * * * * * * 3676 0 0 Q 13 * * 1447 4734 * * 5081 * 5066 * * 2476 * 2575 3054 3874 * * * * 13 0 * * * * * * 3676 0 0 F 14 * * * * 332 * 4569 * * * * * * * * * * * * 2615 14 0 * * * * * * 3676 0 0 L 15 * * * * 2955 * * 4108 * 299 * * * * * * * * * * 15 0 * * * * * * 3676 0 0 H 16 * * 3712 * * 5288 3906 * 1814 * * 2704 * 4791 2539 2701 4976 * * * 16 0 * * * * * * 3676 0 0 D 17 3606 * 2926 5081 * 4739 * * 3775 * * 4727 * 2433 * 2010 2916 4552 * * 17 0 * * * * * * 3676 0 0 Q 18 4734 * * 2246 * * * 3396 4108 * * * * 1716 * 1765 * * * * 18 45 * 5029 * * * * 3676 0 0 L 19 4644 * * * * * * 2384 * 1711 4495 * * 4754 * 3341 4725 2029 * * 19 59 4644 * 1000 1000 * 0 3724 1000 1000 R 20 4838 * 3561 2617 * 4680 3657 * 2665 * * 3669 * 3526 5257 2809 3222 * * * 20 46 * 4996 * * 0 * 3724 0 1000 H 21 4672 5033 2158 3725 * 3744 3565 * 3527 * 5008 4492 * 4420 * 2338 3949 * * * 21 0 * * * * * 0 3667 0 1000 G 22 4162 * 3739 5027 * 1161 * * 2947 * * 2508 4420 * * 4672 * * * * 22 64 * 4533 * * 0 * 3667 0 1000 G 23 3861 * 3361 2871 * 5322 * * * * * 4462 * 3174 * 1986 2714 3169 * * 23 0 * * * * * 0 3637 0 1000 L 24 4029 * * * 2968 * * 2647 * 1517 4922 * * * * * * 2645 * 3197 24 0 * * * * * 0 3637 0 1000 S 25 3777 * * * * * * * 4949 * * 4051 * * * 764 2026 * * * 25 0 * * * * 0 * 3637 0 1000 S 26 2205 * 4569 1875 * 4375 * * * * * * 2693 * * 1913 * * * * 26 0 * * * * * * 3676 0 0 D 27 * * 707 1369 * * * * * * * * * * * * * * * * 27 0 * * * * * * 3676 0 0 A 28 2604 * 2477 3376 * 3604 * 3712 * * * 3556 * 3496 4739 3083 * * * 3798 28 0 * * * * * * 3676 0 0 Q 29 1465 5066 * * * * * 5078 2280 * 4569 4727 * 3590 3720 5284 3854 4695 * * 29 0 * * * * * * 3676 0 0 E 30 * * 3464 137 * * * * * * * * * * * * * * * * 30 0 * * * * * * 3676 0 0 S 31 4108 * * * * 3239 * * * * * * * 4791 * 322 * * * * 31 0 * * * * * * 3676 0 0 L 32 * * * * * * * 2246 * 620 3729 * * * * * * 3985 * * 32 0 * * * * * * 3676 0 0 E 33 * * 2830 470 * * * * * * * 3396 * 4552 * * * * * * 33 0 * * * * * * 3676 0 0 V 34 * * * * * * * 3741 * * 4695 * * * * * * 174 * * 34 0 * * * * * * 3676 0 0 A 35 0 * * * * * * * * * * * * * * * * * * * 35 0 * * * * * * 3676 0 0 I 36 4734 * * * * * * 876 3712 * 4248 4734 * 3741 * * 4791 2836 * * 36 0 * * * * * * 3676 0 0 Q 37 * * 2583 4552 * * * * * * * 3754 * 640 * 3741 * * * * 37 0 * * * * * * 3676 0 0 C 38 * 0 * * * * * * * * * * * * * * * * * * 38 0 * * * * * * 3676 0 0 L 39 * * * * * * * 799 * 1234 * * * * * * * * * * 39 0 * * * * * * 3676 0 0 E 40 1991 * * 986 * * * * * * * * * 3241 4552 3396 * * * * 40 0 * * * * * * 3676 0 0 T 41 5029 * 1893 2667 * * 4108 * * * * 3757 * * * 2825 1892 * * * 41 0 * * * * * * 3676 0 0 A 42 728 * * * * * * * * * * * * * * 2904 3265 2656 * * 42 0 * * * * * * 3676 0 0 F 43 * * * * 568 * * * * * * * * * * * * * * 1620 43 0 * * * * * * 3676 0 0 G 44 3283 * * 2096 * 1930 3664 * 2015 * * 3746 * * * * * * * * 44 0 * * * * * * 3724 0 0 V 45 * * * * 4200 * * 1546 * 2186 * * * * * * * 1383 * * 45 70 4397 * 3322 152 * * 3724 1000 0 T 46 4420 * 1823 2815 * * 3726 * 4639 * * 4707 * 4914 * 1992 3474 * * * 46 0 * * * * * * 3754 0 0 V 47 3812 * 3931 3523 * * * 5059 4699 * * 3431 1327 4627 4158 4651 * 5208 * 4235 47 0 * * * * * * 3707 0 0 E 48 3086 * 2743 1996 4562 4869 * * 4202 * * 3222 * * * 2942 3132 * * * 48 0 * * * * * * 3734 0 0 D 49 * * 563 2561 * * * * * * * * * 4427 * 3222 * * * * 49 208 3921 3868 1800 488 * * 3615 1605 0 S 50 3236 4645 2721 2667 * * * 4045 * * * * 3360 4852 * 2771 2948 * * 3716 50 180 3089 * 2192 356 * 0 3487 1572 1000 D 51 1654 * 1717 4092 * * 3292 * 3919 * * * * * * 3499 3992 * * * 51 120 3648 * 1514 622 0 * 3472 1134 1000 L 52 2722 * * 3901 3643 * 3997 * * 1418 * * 3702 * * * * 2414 * * 52 0 * * * * * * 3799 0 0 A 53 2098 * 2452 * 3802 * 4616 4055 3702 3499 4456 * * 2818 4100 * * * * * 53 0 * * * * * * 3799 0 0 L 54 4552 * * 3787 * 3238 * 3997 4456 4716 * 2850 3643 * 4523 3702 3335 2362 * * 54 67 4456 * 2000 415 * * 3799 1000 0 P 55 * * * 4100 * 1599 * * 4616 4523 * 3997 2760 * * 2031 * 3787 * * 55 93 * 3997 * * * * 3799 0 0 Q 56 3922 * 3628 * * * 4425 4264 3739 3809 * * 2417 1783 2937 * * * * * 56 0 * * * * * 0 3715 0 1000 T 57 * * 3651 * * 3963 * * * * * 2904 1560 * 3628 2549 2924 * * * 57 0 * * * * 0 * 3715 0 1000 L 58 * * * * * * 3901 3643 4523 305 * * * * * * * * * * 58 0 * * * * * * 3799 0 0 P 59 3452 * * * * * * 3901 4552 1719 4556 * 2706 3787 * 4017 4391 3702 * 4616 59 0 * * * * * * 3799 0 0 E 60 3702 * 3190 1406 * * * * * * * 3997 4523 3213 * 3267 3080 * * * 60 0 * * * * * * 3799 0 0 I 61 3702 * * * * * * 1571 * 1205 3471 * * * * * * 3997 * * 61 0 * * * * * * 3799 0 0 F 62 * * * * 448 * * * * 3802 * * * * * * * * * 2358 62 0 * * * * * * 3799 0 0 E 63 3643 * * 1188 * * * * 2087 3952 * * * * * 3443 * 3491 * * 63 0 * * * * * * 3457 0 0 A 64 2141 * * * * * * * * * * * * * * 371 * * * * 64 0 * * * * * * 3060 0 0 A 65 850 * * * * * 3022 * 2778 * * * * * * * 2504 * * * 65 0 * * * * * * 2965 0 0 A 66 2716 * * * * * * * * 2713 * * * * * 2524 1671 2270 * * 66 0 * * * * * * 2703 0 0 T 67 * * * * * * * * 2134 * * * * * * 878 2134 * * * 67 0 * * * * * * 2239 0 0 G 68 * * * * * 0 * * * * * * * * * * * * * * 68 0 * * * * * * 1407 0 0 K 69 * * * * * * * * 0 * * * * * * * * * * * 69 0 * * 0 * * * 1407 0 0 //