HHsearch 1.5 NAME c4ce4X_ FAM FILE c4ce4X_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4ce4X_.a3m DATE Sat Jan 11 09:11:52 2014 LENG 87 match states, 87 columns in multiple alignment FILT 111 out of 243 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.2 EVD 0.4501 1.0479 SEQ >ss_dssp CCCEECSSSCCSCCCBSEEEEEECSSCCHHHHHHHHHHTSCCCEEEEEEEEECCCEEEETTTTEEEECCCEEEEEEEECTTCBCCCC >sa_dssp EDCDDCCDDCEDECEEBCBBCDBCEEDDDDDBDDCBDEEEEDEBEDBECEEDEBEEEEEEEEEDEDDDEDDBBACBDCDEEEECEDE >ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCC >ss_conf 964212211246799988999977546989999999998687055898984079620024567864278826999990899812269 >Consensus xxxxxxxxxxxxxxPxNxvxFxVxxxatKxeIKxavExiyxVkVxxVnTxixxGKxKRxxxrxxxgkrxdyKKAiVtLxxGqxxxxx >c4ce4X_ XXXXXXXXXXXXXXPEDTVQFRIPMEMTRVDLRNYLERIYNVPVAAVRTRVQYGSNRRRDHRNIRIKKPDYKVAYVQLALGQXXXXX >UniRef50_Q09727(27-84:161) Uncharacterized protein C31A2.08 n=1 Tax=Schizosaccharomyces pombe RepID=YA48_SCHPO E=2e-05 s/c=0.87 id=28% cov=62% --------------------FRVPLHVNKFDVRDYLQHVYNLKVVSVKSRIYQGKLFRNQLGQVKRPQSEKRV-------------- >UniRef50_C9S7M8(36-102:186) Putative uncharacterized protein n=1 Tax=Verticillium albo-atrum VaMs.102 RepID=C9S7M8_VERA1 E=4e-05 s/c=0.73 id=29% cov=76% --------------PPNWATFEVPLRFNKFDIRDYLWNLYGVETTAVRSWVKMPPvERKLDGRGAAYHPKSIKFMTVELT-------- >UniRef50_B1AIM2(27-89:105) 50S ribosomal protein L23 n=15 Tax=Ureaplasma RepID=RL23_UREP2 E=9e-06 s/c=0.81 id=20% cov=74% -----------------TLTFIVDKNANKYQIREAFIAIFGLKPLKIRTTNRRPAKIRTSTARPGYTKA-KKIAYVVMPVG------ >UniRef50_Q85FI0(20-82:93) 50S ribosomal protein L23, chloroplastic n=5 Tax=Embryophyta RepID=RK23_ADICA E=0.0005 s/c=0.72 id=21% cov=67% --------------------FQVDLKLTKTGMKDWIERFFDVKVEGINSS-RMTSKNGKKKNKLNITYVSYKKMIVRL--------- >UniRef50_C6V4D1(30-86:94) Ribosomal protein L23 n=2 Tax=Neorickettsia RepID=C6V4D1_NEORI E=0.0003 s/c=0.81 id=28% cov=41% -----------------------PVSATKKQVRSlFLERFKGIKILAVNSVLTCGKSKR----------------------------- >UniRef50_A8J6R9(85-153:226) Mitochondrial ribosomal protein L23 n=1 Tax=Chlamydomonas reinhardtii RepID=A8J6R9_CHLRE E=2e-10 s/c=0.97 id=27% cov=68% ------------------VAFKTTPDVTKLEIAAFLQSVYGMNVERVSTINYLGRRRlaiSRNGKRLWWREDDWKKAYV----------- >UniRef50_Q5FFU2(25-88:96) 50S ribosomal protein L23 n=5 Tax=Anaplasmataceae RepID=Q5FFU2_EHRRG E=2e-06 s/c=0.84 id=18% cov=57% -------------------------------IKKAFKVVFGLDVVRINILNQKGKKK--YFKGIIGHRKDRKKVYFSLLKDQ----- >UniRef50_Q18GF1(22-72:84) 50S ribosomal protein L23P n=10 Tax=Euryarchaeota RepID=RL23_HALWD E=2e-05 s/c=0.99 id=19% cov=41% ----------------NKLQFIVDTDATKDEIENEIESRYEITIIDTKTQI------------------------------------ >UniRef50_A9B414(22-90:98) 50S ribosomal protein L23 n=45 Tax=Bacteria RepID=RL23_HERA2 E=6e-16 s/c=1.23 id=29% cov=78% ---------------EGKYTFEVAQEANKPMIKAAVQQIFNVNVKAVNTMNVKGKLKVRRTRNGQqsGYSRSWKKAIVTLAPGE----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * X 1 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 1 * * * * * * * 0 0 0 X 2 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 2 * * * * * * * 0 0 0 X 3 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 3 * * * * * * * 0 0 0 X 4 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 4 * * * * * * * 0 0 0 X 5 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 5 * * * * * * * 0 0 0 X 6 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 6 * * * * * * * 0 0 0 X 7 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 7 * * * * * * * 0 0 0 X 8 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 8 * * * * * * * 0 0 0 X 9 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 9 * * * * * * * 0 0 0 X 10 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 10 * * * * * * * 0 0 0 X 11 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 11 * * * * * * * 0 0 0 X 12 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 12 * * * * * * * 0 0 0 X 13 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 13 * * * * * * * 0 0 0 X 14 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 14 * * * * * * * 0 0 0 P 15 * * * * * * * * * * * * 0 * * * * * * * 15 0 * * * * * * 3473 0 0 E 16 * * * 1637 * 5012 * * 2852 * * 1878 2236 * 5333 * * * * * 16 0 * * * * * * 4469 0 0 D 17 * * 3088 * * 4102 * * 6049 * * 448 * * 5229 5649 * * * 5092 17 0 * * * * * * 4704 0 0 T 18 5847 4929 * 5355 * * 4979 * 2149 6497 * * * 4145 4213 6029 1821 2497 5439 4372 18 0 * * * * * * 4707 0 0 V 19 3188 * * * 5496 * * 2589 * 2297 5029 * * * * * * 1516 * 3080 19 10 * 7164 * * * * 4921 0 0 Q 20 3547 * * 5785 * 5890 6396 * 3809 5561 5763 * 6131 2827 4850 3564 2169 1944 * * 20 0 * * * * 0 * 4951 0 1000 F 21 * * * * 112 * * 6166 * 4375 * * * * * * * * * 6308 21 0 * * * * * * 5124 0 0 R 22 6601 * 4105 3500 7074 * 4423 2817 2570 3928 6502 4927 * 3935 3080 6508 6606 3223 5721 4710 22 0 * * * * * * 5124 0 0 I 23 5208 5097 * * * * * 4219 * 6524 * * * * * * 3862 303 * * 23 0 * * * * * * 5123 0 0 P 24 4095 * 1853 5228 6931 6511 4448 * 5490 5055 * 3883 1946 4989 4602 3586 5610 5881 * * 24 0 * * * * * * 5140 0 0 M 25 4488 6301 * * * * 6721 3871 2976 2763 3967 4756 2176 4924 3530 4805 4519 4062 6734 * 25 16 6532 * 1585 585 * * 5140 1000 0 E 26 4958 * 2550 3532 * 4507 5006 * 2388 6730 * 3700 * 4122 2936 3021 5668 * 6615 5886 26 0 * * * * * * 5155 0 0 M 27 1406 6623 * * 4067 * * * * 3222 2236 * * * * 3794 6567 2825 * 6713 27 0 * * * * * * 5163 0 0 T 28 5785 * 6698 * * 5383 4760 * 6569 * * 1670 * * 6827 2844 1189 * * * 28 0 * * * * * * 5163 0 0 R 29 * * * * * * * * 173 * * 5769 * 6005 3666 * * * * * 29 0 * * * * * * 5163 0 0 V 30 4497 * 4949 5640 4411 5511 4413 3954 4692 2964 6450 6636 3126 4169 4467 5002 2550 4699 * 3666 30 0 * * * * * * 5163 0 0 D 31 5150 * 1790 1539 * 5830 * * * 5962 7133 5556 * 2359 6637 4987 * 5582 6762 6636 31 0 * * * * * * 5163 0 0 L 32 5463 * * * 5484 * * 681 * 3155 4605 * * * * * * 2491 * * 32 0 * * * * * * 5167 0 0 R 33 4574 * * 4912 * * * * 771 * * * * 5989 1831 6493 * 5544 6695 * 33 0 * * * * * * 5167 0 0 N 34 3066 * 3273 3067 * * 4567 6475 3032 6657 * 2849 * 3097 3662 3415 4933 6498 * * 34 18 6369 * 0 * * * 5179 1000 0 Y 35 1169 6336 * 4608 4501 * * 6373 * 5015 * 6696 * * * 5965 * 6075 4898 1553 35 0 * * * * * * 5179 0 0 L 36 * * * * 3032 * * 2566 * 1499 5461 * * * * * * 1589 * * 36 0 * * * * * * 5179 0 0 E 37 6875 5899 6212 754 5883 * * 5956 3217 4841 * 6459 * 4282 6318 5383 4222 * 6544 5089 37 0 * * * * * * 5179 0 0 R 38 3804 * 5348 3821 5184 5321 4461 5944 1873 4535 5222 4577 * 3941 3561 3348 3872 7475 * 6373 38 0 * * * * * * 5179 0 0 I 39 3745 5795 * * 3795 * * 1992 5751 1722 4779 6478 * 5810 4605 * 6131 3027 * 5738 39 0 * * * * * * 5179 0 0 Y 40 * * * * 1145 * * * 6369 4962 * * * * * 6555 * 6479 * 1054 40 24 5937 * 0 * * * 5179 1406 0 N 41 6343 * 2978 4000 * 1632 * * 2413 * * 2343 * 5364 6209 4246 * * * * 41 0 * * * * * * 5179 0 0 V 42 6318 * * * * * * 3080 5951 2827 6081 * * 6498 * * 4850 618 * * 42 0 * * * * * * 5179 0 0 P 43 6479 * 4222 3683 * 6336 7332 * 1314 * * 3370 2965 5208 4047 4691 3546 * * * 43 15 6558 * 0 * * * 5179 1000 0 V 44 5023 * * * * * * 3218 * 5791 * * 4212 * * * 4829 406 * * 44 0 * * * * * * 5179 0 0 A 45 3412 * 4261 3304 * 6800 * 2769 3441 3491 5609 4666 * 4902 4892 4371 3388 2910 * 6373 45 0 * * * * * * 5179 0 0 A 46 3184 * 2806 4840 * 4732 * * 1793 * * 4319 * 7008 3230 2495 6924 6800 5973 6515 46 0 * * * * * * 5179 0 0 V 47 5973 6489 * * * * * 2356 * * 5986 * * * * * 6075 421 * * 47 0 * * * * * * 5179 0 0 R 48 5872 6459 * 5774 * * 4944 * 4407 * * 1022 * 5370 1819 6081 4093 * * * 48 0 * * * * * * 5179 0 0 T 49 5694 * * * * * * 4318 * 6209 * * * * * 2407 723 3026 * * 49 27 * 5756 * * * * 5177 0 0 R 50 5214 4636 * 6946 5080 * 4170 3588 5125 2409 3672 7082 * 3182 3871 3116 5414 3365 6301 5236 50 29 * 5642 * * * 0 5127 0 1801 V 51 6344 * * * * * 7075 1465 6682 4463 4262 1686 * * 4677 6761 6100 2866 * * 51 47 * 4970 * * 430 1955 5122 0 2761 Q 52 4351 6412 * 4984 4644 * 6363 4961 3000 3568 4230 * * 3596 3129 * 4407 2240 * 3251 52 50 5169 7366 3034 188 1708 527 5531 1528 2297 Y 53 6818 6118 4240 5658 4928 * 4468 5476 2483 3968 2945 4718 3354 3414 3701 4014 * 4657 * 5456 53 24 * 5944 * * 801 1231 5693 0 1997 G 54 5856 * 6214 * * 693 6133 * 4864 * * 5284 2377 * * 3905 5867 * * * 54 51 4851 * 2801 223 1481 640 5680 1996 1691 S 55 3481 * * 4462 * 6553 6477 * 847 * * * 3762 5484 3616 4022 4372 * * * 55 31 5563 * 728 1336 699 1381 5891 1535 1395 N 56 4794 6187 * 5383 4973 5874 6755 3446 2766 4512 5664 4390 3623 4591 2695 3923 3122 5019 * 5090 56 13 * 6808 * * * 0 5692 0 1000 R 57 5641 * * 5231 6199 * 6465 4935 1000 6221 6862 5750 * 6833 1941 6292 6081 6154 5852 5202 57 127 4661 4479 2041 401 697 1383 5915 1943 1291 R 58 * * 5448 * * 5737 * 6211 2790 5302 6827 5320 * 4264 729 5090 * 4922 * 5418 58 204 4403 3566 1837 474 * 0 5895 2199 2176 R 59 3587 4779 4681 5678 * 6401 6021 4141 3170 4612 4659 3237 5878 6447 2092 4536 3881 4175 * 6519 59 203 3983 3882 1205 821 1339 726 5525 2117 3098 D 60 6405 5888 3451 4049 5149 2095 5864 5360 3188 * 6358 3307 * 4327 3207 4256 6109 5657 5979 4963 60 157 * 3280 * * 694 1388 5528 0 3321 H 61 6212 * 6462 * 2704 3404 3972 * 3004 4445 * * 4206 3452 3877 3635 3752 3618 * 4535 61 78 * 4256 * * 1611 572 5536 0 3317 R 62 6176 * * * 4772 2996 * * 2581 4910 * 3834 * 5125 1668 * 2878 5677 * 4193 62 58 4675 * 2024 407 676 1419 5554 1602 3165 N 63 4670 * 4603 6170 6682 2220 6001 * 3271 5139 3835 2483 * 4547 2574 5400 5941 6177 * 5622 63 50 * 4870 * * 264 2582 5544 0 2227 I 64 3989 * * * 3208 3101 4817 2999 4412 4450 4242 4973 3254 * 4341 4604 4534 4433 5548 3877 64 0 * * * * * 0 5531 0 2101 R 65 4578 * * 4360 3905 4262 * 3408 3069 2764 4370 5609 4283 4586 3399 4857 4569 4667 6059 4562 65 26 5806 * 1000 1000 875 1137 5531 1426 2101 I 66 6147 * * 6362 5584 1199 5156 4121 6582 * * 6999 5339 * 5025 5421 3912 3995 4483 2636 66 30 5625 * 1000 1000 0 * 5549 1614 1380 K 67 * * * * 5562 * 3786 6582 1457 6000 4355 4460 5224 5392 2494 3642 4917 6627 * 3827 67 33 * 5476 * * * * 5539 0 0 K 68 * * 4247 3284 6578 5811 * * 2239 6468 * * 4385 5321 1681 5240 2882 5251 * 5631 68 47 6866 5398 1000 1000 975 1026 5520 1000 1771 P 69 3250 4986 3372 3751 * 6261 * * 3257 6093 * 4424 1785 6055 4372 3313 5295 4877 * * 69 79 5722 4873 1000 1000 1554 601 5529 1000 1800 D 70 4181 * 1508 4093 * 3021 6074 * 6472 * 5632 3391 * 4406 3296 3771 5608 * * 5199 70 23 * 5968 * * 0 * 5476 0 2507 Y 71 * * * * 2985 * * 3633 4547 5441 * * * 7224 4598 * 4779 5072 2227 1324 71 36 5331 * 0 * 0 * 5520 1084 1000 K 72 * * * * * * * * 116 * * * * * 3700 * * * * * 72 0 * * * * * * 5539 0 0 V 73 * * * 5784 5939 * * 3693 679 4514 * * * * 3150 * * 3223 * * 73 0 * * * * * * 5539 0 0 A 74 370 * * * 6094 * * 4926 * * 3257 * * * * * * 3758 * * 74 0 * * * * * * 5522 0 0 Y 75 * * * * 3229 * 5582 1583 * 5177 6371 * * * * * 3610 3794 * 1535 75 0 * * * * * * 5522 0 0 V 76 5714 * * * 6463 * * 2526 * 5316 * * * * * * * 375 * * 76 0 * * * * * * 5522 0 0 Q 77 6710 * 5011 3877 5893 * 5959 4863 3560 * * * * 3823 3025 4796 1238 3951 * 5561 77 0 * * * * * * 5505 0 0 L 78 * * * * 6081 * * 6327 * 442 2829 * * * * * * 3385 * * 78 0 * * * * * * 5505 0 0 A 79 1826 * * 6056 * 3930 * 6180 2190 5947 * 5886 3054 5339 3857 4061 4613 4617 * 6016 79 0 * * * * * * 5174 0 0 L 80 4761 * 2853 1799 5469 * * * 2495 5755 * * 2895 3689 3880 * 6044 5399 * * 80 0 * * * * * * 4810 0 0 G 81 * * 3396 * * 176 * * * * * 5645 * * * * * * * * 81 0 * * * * * * 4810 0 0 Q 82 * * 2433 1887 * * * * * * * * * 877 * * * * * * 82 0 * * * * * * 4440 0 0 X 83 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 83 * * * * * * * 1000 0 0 X 84 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 84 * * * * * * * 1000 0 0 X 85 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 85 * * * * * * * 1000 0 0 X 86 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 86 * * * * * * * 1000 0 0 X 87 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 87 0 * * 0 * * * 1000 0 0 //