HHsearch 1.5 NAME c4ce43_ FAM FILE c4ce43_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4ce43_.a3m DATE Sat Jan 11 09:16:46 2014 LENG 59 match states, 59 columns in multiple alignment FILT 107 out of 144 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.2 EVD 0.5082 3.1874 SEQ >ss_dssp CEEEEECCSCCTTSCHHHHHHHHHHTCSSTTCCEEEECCHHHHHHHHHSGGGCEEEEEC >sa_dssp EDCCACBDDDCEEDDEEBCDCBEEADBEEDEDDDDCEDDEECDDCBEDAEDABECEDEE >ss_pred CEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHCCEEEEEEEEC >ss_conf 93999972156798989999999707665387699809989985997332137878609 >Consensus KxxxVtxvksxigxpxxxrxtlxxLGLxkxxxxvxxxdtPxixGmixkVkhLVxVexvx >c4ce43_ KLHIVTRIKSTKRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIKPLK >UniRef50_Q9UA63(58-118:197) Putative uncharacterized protein W04B5.4 n=2 Tax=Caenorhabditis RepID=Q9UA63_CAEEL E=1e-07 s/c=0.95 id=30% cov=102% KLWMAWLYRDTSAEPKWTKKHVENLfGADfKVGRMEVFRNTELINTELWKIKHLIELRPVE >UniRef50_C5CGI4(3-61:62) 50S ribosomal protein L30 n=10 Tax=Bacteria RepID=RL30_KOSOT E=0.0002 s/c=0.79 id=23% cov=102% KKLKIKLVKSPIGYNRRQRATLKALGLRKISDEVVHDDSPQIRGMINAVIHMLEVKEIE >UniRef50_O59856(4-60:97) Probable 60S ribosomal protein L33, mitochondrial n=1 Tax=Schizosaccharomyces pombe RepID=RM33_SCHPO E=6e-07 s/c=0.97 id=19% cov=98% --FRVRLERSAIGLSSKVRSVLHSLRLTKRHSVVYCDVNPINAGRIFKVKELVSVSTVK >UniRef50_A4S0L8(4-60:83) Predicted protein n=2 Tax=Ostreococcus RepID=A4S0L8_OSTLU E=2e-07 s/c=0.99 id=29% cov=95% ----VTLRRGTAGKPKTILQTLSALGLRKTRDARIVPNDAGARGKLNQVKHLVSVETLE >UniRef50_Q9U0Z7(257-313:409) Hypothetical transmembrane protein L5683.03 n=5 Tax=Trypanosomatidae RepID=Q9U0Z7_LEIMA E=1e-06 s/c=0.95 id=25% cov=93% -VFIVTCIDHPFKFSWEVNRMLRELRLEFMGQTTVVPDIPPVRKRIWRVRHVVRV---- >UniRef50_O26132(1-57:152) 50S ribosomal protein L30P n=5 Tax=Euryarchaeota RepID=RL30_METTH E=1e-05 s/c=0.89 id=21% cov=90% -MFAVVRVRGSAGVRRDIADTMEMLRLNRINHAVLVEDTPSYLGMLQKAKDYI------ >UniRef50_Q1ISA4(22-71:74) 50S ribosomal protein L30 n=2 Tax=Acidobacteria RepID=RL30_ACIBL E=1e-05 s/c=1.02 id=31% cov=83% -------IRSAIQAPVKHKLVIKGLGFTRLNQVIVREDSPSIRGMVAKVPHLVEI---- >UniRef50_B3T584(4-55:155) Putative ribosomal protein L30p/L7e n=1 Tax=uncultured marine microorganism HF4000_ANIW141A21 RepID=B3T584_9ZZZZ E=0.0008 s/c=0.86 id=24% cov=85% ----VLNVRGTINAPYGVRQTLDCLKISRRHRATIVKDHPTLRGMLKRSKEFI------ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 93 * * * * * 4001 * * * * * 1 0 * * * * * * 4214 0 0 L 2 * * * * * * * 5282 4179 1269 3398 * * 4072 3566 5028 3099 3081 * * 2 0 * * * * * * 4736 0 0 H 3 * * * * 1526 * 3040 3564 * 2238 * * * * * * * 4743 3633 3098 3 0 * * * * * * 5067 0 0 I 4 3600 * * * 4781 * 6078 3407 2797 3593 2893 * * * 1777 * 5815 3304 * * 4 0 * * * * * * 5205 0 0 V 5 4978 * * * * * * 1210 * 5850 * * * * * * * 947 * * 5 0 * * * * * * 5198 0 0 T 6 * 5501 * 5440 * * 6123 5213 3180 5604 * * * 4019 3996 5678 890 4594 4115 * 6 0 * * * * * * 5198 0 0 R 7 * 5211 * * * * * * 5439 1153 6006 5604 * 2008 2388 * * * 5850 7116 7 0 * * * * * * 5198 0 0 I 8 4917 5984 * 6747 * * * 2144 4521 4590 * 6447 * * 4016 6915 3474 1285 * 4362 8 0 * * * * * * 5198 0 0 K 9 5815 * 5219 * * 5164 * * 1129 * * * * 5434 1161 * * * * * 9 0 * * * * * * 5202 0 0 S 10 5777 * 5021 * * 2900 5219 * * * * * 4057 * 4719 572 5700 * * * 10 0 * * * * * * 5202 0 0 T 11 2869 * 6101 * 3609 5609 * 4555 * 1906 6967 6503 3613 * 4911 3702 2634 4853 * 5048 11 21 6114 * 0 * * * 5202 1000 0 K 12 3547 * * * 4653 * 6371 911 2942 5348 * 5007 5697 * 4772 5021 6712 4667 * 6718 12 0 * * * * * * 5202 0 0 R 13 4004 6818 * * * 603 4645 * 4374 * * 5187 * 6750 3440 4700 * * * 6075 13 0 * * * * * * 5202 0 0 R 14 3110 4361 * 4032 5219 * 6393 5561 5138 4126 4237 3684 * 4295 2074 5607 3511 3625 * 5632 14 0 * * * * * * 5202 0 0 P 15 * * 5313 * * 6026 6987 5238 3056 4624 * 6062 1049 7039 3685 3508 3809 5543 * * 15 0 * * * * * * 5202 0 0 Y 16 4451 * 5901 3137 5876 * 4171 6943 2501 * 5860 * 2575 4176 4191 4772 * 6750 3569 2823 16 0 * * * * * * 5202 0 0 W 17 6151 * 3449 4123 6845 4846 4763 * 2202 6488 * 4044 5693 5312 3527 4482 3939 5732 2573 4665 17 0 * * * * * * 5202 0 0 E 18 6883 * 6021 3180 * * 2443 3155 6494 * 5300 6584 * 1587 * 6397 3592 3570 * 6516 18 0 * * * * * * 5202 0 0 K 19 6450 7118 * 7120 * 6465 * 4265 1491 5029 * 4750 * 6279 1224 6402 5954 5774 * * 19 0 * * * * * * 5207 0 0 D 20 2478 * 2813 4120 * 3760 * * 2308 4326 * 4699 * 4318 2572 5074 6849 * * * 20 0 * * * * * * 5202 0 0 I 21 4582 7030 * * * * 5097 2746 * 6183 5211 5012 * * * 4180 969 2893 * * 21 0 * * * * * * 5296 0 0 I 22 4286 5213 * * * * * 2795 * 1035 3516 * * * * * * 2305 * * 22 0 * * * * * * 5296 0 0 K 23 3374 * 4129 2761 6521 * 4481 4859 1816 7153 6741 6128 * 5031 2367 6755 5302 4840 * * 23 0 * * * * * * 5296 0 0 M 24 1943 4792 5309 3321 6396 2654 * 6482 4959 5560 4105 5097 * 5646 * 2443 5591 4998 * * 24 0 * * * * * * 5296 0 0 L 25 * * * * 4934 * * 4682 * 266 3722 * * * * * * * * 5558 25 43 5098 * 0 * * * 5297 1000 0 G 26 * * 7130 * * 386 5837 * 3712 * * 5302 * * 3202 * * * * * 26 0 * * * * * * 5297 0 0 L 27 5098 * * * 4376 * * 4456 * 189 * * * * * * * * * * 27 25 5837 * 0 * * * 5297 1000 0 E 28 7016 * 3444 4408 * 2948 4187 * 2017 * * 4178 * * 2120 4887 3649 * * 5447 28 94 3989 * 692 1393 * * 5297 1993 0 K 29 * * 6543 5166 5212 4934 5165 * 902 * * 6391 * 6187 1714 * * * * 6917 29 57 4680 * 1354 716 * * 5297 1743 0 A 30 6732 6512 5558 * 6386 6090 6391 1978 4142 3535 3136 * 5070 5837 2597 * 4082 2859 * * 30 31 5558 * 1585 585 * * 5297 1000 0 H 31 * * 6041 7339 4983 2029 2401 * * 6459 6744 1707 * 4735 3906 4081 6401 * * 6569 31 0 * * * * * * 5297 0 0 T 32 4456 * 3040 6569 * * 2947 * 3144 * * 5042 * 1909 3044 3064 5508 * * 5644 32 0 * * * * * * 5297 0 0 P 33 3778 5066 6574 3784 * * 7365 3080 5609 * 4336 * 4931 4624 7043 2770 2207 2831 5558 6153 33 15 6574 * 0 * * * 5297 1000 0 Q 34 5754 * * 5101 * * * 5064 4487 5240 6154 6808 * 5503 3282 4315 3328 889 * 6190 34 0 * * * * * * 5296 0 0 V 35 5243 6983 5795 2360 4201 * * 2116 6263 4123 * * * * * 5758 5256 1894 * 3578 35 0 * * * * * * 5296 0 0 H 36 * 5254 * * 4096 * 2532 7386 3183 2268 * * * 3995 3762 * * 1976 * 5156 36 0 * * * * * * 5296 0 0 K 37 5306 * 3462 2883 6744 * * 5459 1730 7034 * 4750 2437 3889 3642 5990 * 5495 * * 37 0 * * * * * * 5296 0 0 N 38 4739 * 1221 5087 7055 7248 6060 * 4895 6263 * 1675 * 6464 * * 6514 3430 * * 38 0 * * * * * * 5296 0 0 I 39 * 5205 5103 * * * 5692 3732 * 5710 * 2299 * * 7097 2461 1211 7422 * * 39 0 * * * * * * 5296 0 0 P 40 3615 * 5384 4488 * * * * 6346 * * * 420 6558 * 4584 5122 6779 * * 40 0 * * * * * * 5296 0 0 S 41 2633 6915 4947 2401 7728 5755 * 5428 5459 4408 6941 * 5220 2897 * 2085 4520 4508 * * 41 0 * * * * * * 5296 0 0 V 42 5814 * * * 4682 * * 1569 * 3626 3760 3702 * 6528 * 5913 3404 2138 * 5291 42 0 * * * * * * 5296 0 0 N 43 3082 4645 * * * * 6777 * 4684 3626 5882 2472 * 3977 1271 5710 * 5740 * * 43 0 * * * * * * 5296 0 0 A 44 4893 * * 5459 * 479 5703 * 4444 * * 4862 * 5840 4723 5002 4634 * * * 44 0 * * * * * * 5296 0 0 K 45 5804 * 5583 5101 * * * 5459 3675 3484 1034 5745 * 3126 3431 6942 * * * 5699 45 0 * * * * * * 5296 0 0 L 46 6388 * * * * * * 1312 * 1179 * * * * * * * 2800 * * 46 0 * * * * * * 5296 0 0 K 47 3499 * 5532 6779 4550 * 4138 * 3533 5248 5567 2300 * 4145 3532 4404 4877 * 2495 4544 47 0 * * * * * * 5296 0 0 V 48 3863 * 5710 4602 6346 5459 6464 6915 964 5308 * * * 3679 3440 5346 4111 5270 * * 48 0 * * * * * * 5296 0 0 V 49 4965 5408 * * * * * 2295 * 4664 * * * * * 5692 5411 603 * * 49 0 * * * * * * 5296 0 0 K 50 4537 7002 * 6446 * 6784 5513 7183 1031 5874 * 5949 4620 4298 2842 2887 * * * 6490 50 0 * * * * * * 5296 0 0 H 51 * * 4858 2993 7162 * 532 * * 6312 * 7698 6621 6160 5721 6414 * * * 3851 51 0 * * * * * * 5178 0 0 L 52 * * * * 4421 * * * * 273 4014 * * * * * * 5226 * 4754 52 0 * * * * * * 5178 0 0 I 53 * * * * * * * 1987 * 2831 * * * * * * * 720 * * 53 0 * * * * * * 5178 0 0 R 54 * * 5778 2411 * * 5726 * 1811 6703 5302 6675 * 4661 2790 2916 3675 4318 * * 54 0 * * * * * * 5075 0 0 I 55 * 6437 * * * * * 2054 * 4193 * * * * * * * 529 * * 55 0 * * * * * * 5079 0 0 K 56 * * * 1140 * * * * 2627 * * * * 3662 3979 5737 2785 3677 * * 56 0 * * * * * * 4949 0 0 P 57 * * * 1270 * * * * 4690 * * 4105 1426 * * 4774 4027 5765 * * 57 0 * * * * * * 4856 0 0 L 58 6056 * * * * * * 2103 * 2869 * * * * * * 5600 750 * * 58 0 * * * * * * 4856 0 0 K 59 * * * 1565 * * * * 1598 * * * * 2670 2519 * * * * * 59 0 * * 0 * * * 4251 0 0 //