HHsearch 1.5 NAME c4ce42_ FAM FILE c4ce42_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4ce42_.a3m DATE Sat Jan 11 09:17:58 2014 LENG 76 match states, 76 columns in multiple alignment FILT 68 out of 72 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.8 EVD 0.4607 0.8292 SEQ >ss_dssp CHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC >sa_dssp EECDDBCEEDCEEDCDEECEDDCEDCEECCDECDEBEEEEEECEDDEEBEECDEDCECBDEABDCCDDDDEEEEEE >ss_pred CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >ss_conf 9888999730089999999999999979842799999518899982379999999999999999999999998419 >Consensus aWxxxELRxKSxxDLHkLWyvlLKErNxLxTxxxxxxxxxxxxxxxxRxxkVxxSMxxIkxVlxERxxAxxxxxtg >c4ce42_ SWTCQQLRNKSNEDLHKLWYVLLKERNMLLTLEQEAKRQRLPMPSPERLEKVVDSMDALDKVVQEREDALRLLQTG >UniRef50_A2QCC7(125-207:273) 54S ribosomal protein L4, mitochondrial n=20 Tax=Eurotiomycetidae RepID=RM04_ASPNC E=2e-05 s/c=0.61 id=42% cov=101% SWSIQELREKSWDDLHSLWWVCVKERNRIATSDMERKRLKAGYGeweSSERDRVIRVTQNGIKHVLRERwyawEEAQRLYRKG >UniRef50_Q6CWC4(90-163:332) 54S ribosomal protein L4, mitochondrial n=5 Tax=Saccharomycetaceae RepID=RM04_KLULA E=4e-14 s/c=1.07 id=34% cov=96% -WTIPELRRKSFTDLHSLWYTCLKERNVLARENHLVQFNFEAQTEAYQDisEKIRTTMWRIRHVLSERDWAFKIA--- >UniRef50_A9S4X1(81-127:137) Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S4X1_PHYPA E=0.0002 s/c=1.00 id=39% cov=58% -----------------------------LIMKPMLLSQNMRMPYPERFPKVRKTMCRIKQVLTERalveEDASRR---- >UniRef50_A0CYR6(56-130:312) Chromosome undetermined scaffold_31, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0CYR6_PARTE E=2e-16 s/c=1.16 id=43% cov=91% SWKVEELRLKSTEDLTKLWYVMLKEKNLLLSDGIFFKKVVGVKGRMGKLVQLKISMARLKTVVQERDR-------- >UniRef50_Q6CF20(79-154:340) 54S ribosomal protein L4, mitochondrial n=1 Tax=Yarrowia lipolytica RepID=RM04_YARLI E=4e-21 s/c=1.34 id=42% cov=95% -WSVAELRRKSFEDLHALWYVCLKERNILLkeervTTRMHFENQNGGYRSEH--DRVGETMVNIRHVLAERYRAFEEVQ-- >UniRef50_D2V747(41-113:155) Predicted protein n=1 Tax=Naegleria gruberi RepID=D2V747_NAEGR E=3e-20 s/c=1.36 id=46% cov=97% AWSIKEIRSKSLSDLQKLWIVLMKERNMLLTCRLLAKSMGGRMTHPERLVKVRTSMARIKEVIAERERDAKEV--- >UniRef50_A8PW51(122-203:229) Putative uncharacterized protein n=1 Tax=Malassezia globosa CBS 7966 RepID=A8PW51_MALGO E=7e-23 s/c=1.32 id=45% cov=100% AWLAPELRRKSSADLHTLWYVLLLERNKLATSWEELKRHRadgsahmLGQSLSHRHHRVRKSMARIKYVLNERRLALMEAQR- >UniRef50_Q38EM7(33-103:471) Putative uncharacterized protein n=2 Tax=Trypanosoma brucei RepID=Q38EM7_9TRYP E=4e-18 s/c=1.30 id=45% cov=91% SWTVEVLRNKSLADLQHIWFLLLKERNMLKSMKEHYLRHQEelgAMPAPSRLKMIDESMRNIKRVVKERDE-------- >UniRef50_B6KCC1(50-123:236) Mitochondrial 39S ribosomal protein L47 domain-containing protein n=3 Tax=Toxoplasma gondii RepID=B6KCC1_TOXGO E=7e-21 s/c=1.36 id=41% cov=99% AWPACLLRMKSFEDLHKLWYICLKEKNLLMGERWAARQHKQEMKQPERLQKVRRTMRRILIVLTKREIQQQCLR-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 956 * * * * * * * * * * * * * * 1045 * * * * 1 0 * * * * * * 3607 0 0 W 2 * * * * * * * * * * * * * * * * * * 0 * 2 0 * * * * * * 3802 0 0 T 3 5007 * * 5636 * * * * 2395 3654 * 6437 3314 6392 3882 2241 1960 * * 5736 3 0 * * * * * * 3802 0 0 C 4 1424 5003 * * * * * 2888 3686 4834 * * * * 5847 5518 3375 2233 * * 4 0 * * * * * * 3802 0 0 Q 5 3565 4723 3491 2103 5405 4604 * * 3830 * * * 4062 3239 5011 2536 5915 5624 6070 * 5 0 * * * * * * 3802 0 0 Q 6 * * 4481 407 * * * * * 3335 6070 * * 4344 * 5730 * 5703 * * 6 0 * * * * * * 3802 0 0 L 7 * * * * * * * 5148 * 41 * * * * * * * * * * 7 0 * * * * * * 3802 0 0 R 8 * * * * * * * * * * * * * * 0 * * * * * 8 0 * * * * * * 3802 0 0 N 9 6437 * * 4280 5736 4410 4600 3345 4404 1802 5636 3899 * 3316 2992 5148 6564 5081 5980 * 9 0 * * * * * * 3802 0 0 K 10 * * * * * * * * 74 * * * * 5238 5429 * * * * * 10 0 * * * * * * 3802 0 0 S 11 * * 4486 * * 5645 * * 5624 * * 5915 * * * 154 * * * * 11 0 * * * * * * 3802 0 0 N 12 * * 5710 * 1549 * 5945 * * 3916 * 2506 * * * 4466 3908 * 2161 4470 12 0 * * * * * * 3802 0 0 E 13 4817 * 2364 1430 * * * * 4233 * * 4147 5710 3501 * 3245 5090 4406 * * 13 0 * * * * * * 3802 0 0 D 14 5238 * 151 4197 * * * * * * * * * * * * 5786 * * * 14 0 * * * * * * 3802 0 0 L 15 * * * * * * * * * 0 * * * * * * * * * * 15 0 * * * * * * 3802 0 0 H 16 * * * * * * 302 * * 6546 * 6867 * 3390 5405 * 4863 * 5947 * 16 0 * * * * * * 3802 0 0 K 17 3454 5342 * 5283 * 4291 5703 5843 1066 * * * * 3404 5974 3160 3817 * * * 17 0 * * * * * * 3802 0 0 L 18 * * * * 5474 * * 4071 * 123 * * * * * * * * * * 18 0 * * * * * * 3794 0 0 W 19 * * * * * * * * * * * * * * 6514 * * * 77 4602 19 0 * * * * * * 3794 0 0 Y 20 * * * * 2896 * 5955 5153 * * * * * * * * * * 2642 597 20 0 * * * * * * 3794 0 0 V 21 4703 * * 6046 * * * 3285 * 3712 5757 4156 * * * 5650 5781 611 * * 21 0 * * * * * * 3794 0 0 L 22 * 1531 * * * * * * * 952 4482 * * * * 4833 4632 5894 * * 22 15 * 6552 * * * * 3794 0 0 L 23 5965 4260 * * * * * * * 335 5149 * * * * * * 3404 * 5920 23 0 * * * * * 0 3795 0 1000 K 24 * * * * * * * 5714 414 5941 5843 * * * 2346 * * * * * 24 0 * * * * * 0 3795 0 1000 E 25 * * * 0 * * * * * * * * * * * * * * * * 25 0 * * * * * 0 3795 0 1000 R 26 * * * * * * * * 1542 6247 * * * 5302 694 * * * * * 26 0 * * * * * 0 3795 0 1000 N 27 * * * * * * 5640 * * * * 29 * * * * * * * * 27 0 * * * * * 0 3795 0 1000 M 28 4921 * * * 5838 * * 4845 3862 2511 1363 * * * 2576 * * 3133 * * 28 0 * * * * * 0 3803 0 1000 L 29 * * * * * * * 3039 * 187 * * * * * * * * * * 29 31 * 5549 * * * 0 3803 0 1000 L 30 1634 * 6141 * 5991 5673 5660 * 4697 1181 3557 * * 5098 * 6084 * * * * 30 21 6102 * 2322 322 * 0 3785 1000 1158 T 31 * * * * * 4049 * 6781 * * * * * * 3645 3059 453 * * * 31 55 5830 5656 2585 263 500 1772 3785 1000 1158 L 32 3807 5174 4230 1639 * * * 5188 * 3142 2753 * * 3179 * 3398 4960 * * * 32 76 4848 5931 2432 296 * 0 3780 1517 1154 E 33 * * 5328 2666 * 4803 5573 * 2409 5215 6131 3138 5802 3403 2048 5094 * * 4879 * 33 31 5573 * 1000 1000 * 0 3770 1000 1462 Q 34 4273 * 5983 2290 5675 * 3077 3933 5802 3754 4693 * 6782 2379 * * 6024 * 4109 3070 34 0 * * * * * 0 3770 0 1462 E 35 3282 * 4967 1092 3792 * 4907 4836 * 2955 4860 * * 4887 * * * 5453 * 4811 35 19 * 6268 * * * 0 3770 0 1462 A 36 1642 3762 * * 4322 5646 4986 * 5740 3151 5954 * * * 2760 3261 6013 4591 * 4379 36 0 * * * * * 0 3767 0 1625 K 37 4381 * 5762 5134 5000 * 5365 4782 1664 3337 * 3685 * 4591 2158 * * 4904 * 5504 37 0 * * * * 1558 598 3767 0 1625 R 38 4036 * 4208 6239 5768 4140 5802 * 3473 * * 3767 * 3497 1139 4456 6589 5907 * * 38 81 4700 5974 735 1325 1089 916 3770 1447 1462 Q 39 6247 6324 * 4253 * 4746 3448 6450 3548 2680 4417 3456 * 2039 * 4144 * 3292 * * 39 26 5826 * 1585 585 * 0 3775 1000 1474 R 40 5421 6247 3560 6186 5804 2322 * * 3954 6324 4729 3987 * 3105 2280 3891 6526 4621 * 5145 40 40 5180 * 2201 354 * 0 3775 1304 1474 L 41 2973 * 5720 2608 * 3915 * 3178 4700 2401 4358 5677 * 5027 5183 5605 3997 4149 * 5721 41 76 4280 * 1814 483 967 1034 3775 1575 1474 P 42 3436 * 6065 4752 5789 2572 5270 6470 3866 6539 5917 * 2289 4156 2577 * 4343 4455 * 6252 42 22 * 6032 * * * 0 3780 0 1154 M 43 6293 * 4539 * 3099 * * 3457 5675 5781 1374 * 6382 4269 * * * 2948 5839 3292 43 28 5722 * 1585 585 * 0 3773 1000 1439 P 44 4242 * 5592 5241 * 2250 * 5602 5651 4177 * * 1184 * 3758 4888 4440 * * * 44 132 3520 * 1883 456 938 1064 3773 1967 1439 S 45 2938 * 4302 3771 5270 3857 5174 5931 6065 5963 * 2638 * 3134 5682 2442 5478 6013 * 4070 45 119 3656 * 2200 354 635 1490 3780 2277 1154 P 46 3100 * * 4029 * 5087 4803 * 4098 6190 5710 4045 1084 5777 * 3973 5769 * * 4912 46 23 6007 * 1585 585 * 0 3805 1000 1000 E 47 * * 3268 1178 5493 3189 3429 * 6284 * * 5555 * 4353 5873 4270 4583 5769 * 5841 47 102 4182 6229 1508 625 * 0 3805 1589 1000 R 48 * * * * * * * * 4767 5323 5764 * * 4293 240 * * 5482 * * 48 0 * * * * * 0 3800 0 1168 L 49 5764 * 2774 * 5065 4993 5955 3136 * 1351 4116 4371 * * 6092 3958 * 5025 * 4777 49 42 5114 * 1000 1000 500 1772 3800 1475 1168 E 50 5672 * 3476 2784 6284 3985 4409 6613 2528 6011 6280 4634 4893 5676 2513 6576 3562 4423 * * 50 64 4521 * 1000 1000 * 0 3805 1508 1000 K 51 4340 * * 4941 * * 5953 * 938 5953 4141 * * 4043 3779 4495 3692 4270 * * 51 0 * * * * * 0 3805 0 1000 V 52 5686 5004 * * * * * 2905 * 4168 * * * * * * * 395 * * 52 0 * * * * * 0 3847 0 1000 V 53 4035 * 5717 4532 * 4660 5928 5535 2641 * 5280 3890 5660 3419 1354 * 5946 5313 * * 53 16 6540 * 3170 170 0 * 3850 1000 1000 D 54 * * 4662 2667 * * * 4588 1656 4633 5848 4893 * 3941 2950 * 3460 3891 * * 54 46 5005 * 2518 277 * * 3848 1433 0 S 55 6586 * * * * * * * * * * * * * * 916 1122 * * * 55 0 * * * * * * 3848 0 0 M 56 * * * * * * * * * 4893 249 * * 3167 6200 * * * * * 56 0 * * * * * * 3848 0 0 D 57 1592 5211 4739 4014 * 5032 6349 * 2803 4923 * 4334 * 4373 2935 5876 * 6164 3982 * 57 0 * * * * * * 3848 0 0 A 58 2570 * * * * 4511 4893 * 5587 * 6149 2275 * 5266 1129 5988 6200 * * * 58 0 * * * * * * 3848 0 0 L 59 * * * * * * * 454 * 2097 * * * * * * * 4782 * * 59 0 * * * * * * 3848 0 0 D 60 * * 4203 3921 * * * 5953 716 2883 * * * * 3070 * * * * * 60 0 * * * * * * 3848 0 0 K 61 4578 * 4006 4515 4384 5509 2065 5669 4935 3890 6303 * * 3278 4736 5489 2466 6038 * 4273 61 0 * * * * * * 3848 0 0 V 62 6579 * * * * * * * * * * * * * * * 5192 56 * * 62 0 * * * * * * 3848 0 0 V 63 * * * * 5876 * * 3604 * 670 4599 * * * * * 5728 2237 * * 63 0 * * * * * * 3848 0 0 Q 64 4589 * 5876 3939 * 4434 5150 * 3350 4217 * 2924 * 4129 2904 3434 2292 * 5030 * 64 0 * * * * * * 3848 0 0 E 65 * * * 116 * * * * 5669 * * * * * 4117 * * * * * 65 0 * * * * * * 3848 0 0 R 66 * * * * * * * * * * * * * * 0 * * * * * 66 204 3125 5878 1938 436 * * 3848 2718 0 E 67 4107 * 3156 1463 * * 5113 * 5813 * * 3340 * 2817 3837 5823 * 5529 4623 5073 67 0 * * * * * 0 3876 0 1000 D 68 4742 * 2112 4089 * 6140 * 4436 4407 2886 * 4290 * 5040 2385 5578 4444 4741 5555 5002 68 0 * * * * 0 * 3745 0 1000 A 69 203 * 4718 * * * * 5242 * * * * * 4821 * 4998 * * * * 69 0 * * * * * * 3659 0 0 L 70 4577 * * 4684 3776 * * 3456 5119 2338 * * * 4148 4287 6206 * 3826 4020 1861 70 0 * * * * * * 3695 0 0 R 71 * * 5573 2136 5665 * 4239 5226 2529 5136 4002 5027 * 3161 2693 5485 4259 * * 5947 71 0 * * * * * * 3675 0 0 L 72 * 4447 * 1564 * * * 4218 * 1856 4947 * * 4362 3041 4163 * 5172 * * 72 0 * * * * * * 3988 0 0 L 73 1133 * * * * * * 4927 * 1372 * * * * * * * 3284 * 5500 73 0 * * * * * * 3618 0 0 Q 74 * * * 1704 * * * * 2513 4474 * * * 1485 3112 * * * * * 74 0 * * * * * * 3410 0 0 T 75 * * * * * * * * 2139 * 4388 * * * 2871 * 765 * * * 75 0 * * * * * * 3216 0 0 G 76 * * * * * 0 * * * * * * * * * * * * * * 76 0 * * 0 * * * 2448 0 0 //