HHsearch 1.5 NAME c4ccvA_ FAM FILE c4ccvA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4ccvA_.a3m DATE Sat Feb 22 08:15:31 2014 LENG 115 match states, 115 columns in multiple alignment FILT 5 out of 9 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 1.8 EVD 0.4097 -0.0595 SEQ >ss_dssp CCCEEEECSCCGGGHHHHHHHHHHHHHTCGGGTTEEEEEEEEEEEEECSSEEEEEEEEEEEEGGGGSTTCCCEEEEEEEEEEEETTCCSSSCCSEEEEEE EEEEGGGSTTTTCCC >sa_dssp EEEEEDDCEECEDBDDBADEBBEDCCEECEEBECBEBCECDDABCCDCEECBCCCABAAADCCDCEEEEDDDBCAEBDACBBBCDEDEDCDECEDDECEB ECDBDCEDEEECDEE >ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHCCCCCEEEEEEHEEEHHHEECCCCCCEEEEEEEEECCCHHHCCCCCEEEEEECEEEEEECCCCCCCCCCEEEEE EEECCCCCCCCCCCC >ss_conf 9669965406105656679999986425443001330100000100267652389999850577213564862456710078851345689800089986 874332236347749 >Consensus xPViiDxxentExyrxxAekALxxYkxexxxxasFxVdrvERvxrxrGGErtxyxvDFSvrNcsxxxfxRxpxfGFCraDlxyxvxxsdLenPxxixvnC EvFxxxexgxixgxx >c4ccvA_ SPVLFDFIEDTEPFRKSADKALEVYKSESEAYASFRVDRVERVTRVKGGERTNYYVDFSVRNCSRSHFHRHPAFGFCRADLSFDVEASNLENPEDVIISC EVFNFEEHGNISGFR >UniRef50_P33433(104-163:396) Histidine-rich glycoprotein (Fragments) n=4 Tax=Bos taurus RepID=HRG_BOVIN E=8e-24 s/c=1.85 id=65% cov=52% --------------------------------------------RARGGEGTSYFLDFSVRNCSSHHFPRHHIFGFCRADLFYDVEASDLETPKDIVTNC EVF------------ >UniRef50_UPI0000F2E2E2(43-292:520) PREDICTED: similar to Histidine-rich glycoprotein precursor (Histidine-proline-rich glycoprotein) (HPRG) n=1 Tax=Monodelphis domestica RepID=UPI0000F2E2E2 E=5e-53 s/c=0.40 id=43% cov=101% PPVIIDYLDNKEQYRSQAEEALKQYKENDASASSFQVVKVERVVQVRGGERSGLYVDFSIRNHSTEAplppFSRScPVFGFCRADFVYNLGNSDLNNPDH LTVDCEIFDVEKDGIVPGQS >UniRef50_P04196(41-356:525) Histidine-rich glycoprotein n=21 Tax=Eutheria RepID=HRG_HUMAN E=1e-133 s/c=0.57 id=66% cov=101% SPVLIDFFEDTERYRKQANKALEKYKEENDDFASFRVDRIERVARVRGGEGTGYFVDFSVRNCPRHHFPRHPnVFGFCRADLFYDVEALDLESPKNLVIN CEVFDPQEHENINGVP >UniRef50_UPI00015562AE(43-362:553) PREDICTED: similar to Histidine-rich glycoprotein precursor (Histidine-proline-rich glycoprotein) (HPRG) n=2 Tax=Mammalia RepID=UPI00015562AE E=1e-108 s/c=0.54 id=49% cov=100% IhPVIIDYFENTEEYGGLAEKALDKYNSESGYSALFKVDRVERAVRGRGGERTVYFVDFSITNCSK-RVARYPSprrcdfVGFCNGDLAYSVGVTNLENP ENIEVNCEIFNNTqthsllkkdkiENGKKGMIY # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * 1935 * * * * 1857 * * 1113 * * * * 1 438 1935 * 0 * * * 1857 1000 0 P 2 * * * * * * * * * * * * 0 * * * * * * * 2 0 * * * * * * 1857 0 0 V 3 * * * * * * * * * * * * * * * * * 0 * * 3 0 * * * * * * 1857 0 0 L 4 * * * * * * * 895 * 1113 * * * * * * * * * * 4 0 * * * * * * 1857 0 0 F 5 * * * * 2104 * * 382 * * * * * * * * * * * * 5 0 * * * * * * 1857 0 0 D 6 * * 0 * * * * * * * * * * * * * * * * * 6 0 * * * * * * 1857 0 0 F 7 * * * * 1113 * * * * * * * * * * * * * * 895 7 0 * * * * * * 1857 0 0 I 8 * * * * 1025 * * 2104 * 1857 * * * * * * * * * * 8 0 * * * * * * 1857 0 0 E 9 * * 1857 466 * * * * * * * * * * * * * * * * 9 0 * * * * * * 1857 0 0 D 10 * * 1113 * * * * * * * * 895 * * * * * * * * 10 0 * * * * * * 1857 0 0 T 11 * * * * * * * * 1857 * * * * * * * 466 * * * 11 0 * * * * * * 1857 0 0 E 12 * * * 0 * * * * * * * * * * * * * * * * 12 0 * * * * * * 1857 0 0 P 13 * * * 1935 * * * * * * * * 2104 1857 2122 * * * * * 13 0 * * * * * * 1857 0 0 F 14 * * * * 2104 * * * * * * * * * * * * * * 382 14 0 * * * * * * 1857 0 0 R 15 * * * * * 1935 * * * * * * * * 438 * * * * * 15 0 * * * * * * 1857 0 0 K 16 * * * * * 1935 * * 1113 * * * * * * 1857 * * * * 16 0 * * * * * * 1857 0 0 S 17 * * * * * * * * * 1935 * * * 983 * 2104 * * * * 17 0 * * * * * * 1857 0 0 A 18 0 * * * * * * * * * * * * * * * * * * * 18 0 * * * * * * 1857 0 0 D 19 * * 2104 895 * * * * * * * 2122 * * * * * * * * 19 0 * * * * * * 1857 0 0 K 20 * * * 1857 * * * * 466 * * * * * * * * * * * 20 0 * * * * * * 1857 0 0 A 21 0 * * * * * * * * * * * * * * * * * * * 21 0 * * * * * * 1857 0 0 L 22 * * * * * * * * * 0 * * * * * * * * * * 22 0 * * * * * * 1857 0 0 E 23 * * 1935 1113 * * * * 1857 * * * * * * * * * * * 23 0 * * * * * * 1857 0 0 V 24 * * * * * * * * 1025 * * * * 1857 * * * 2104 * * 24 0 * * * * * * 1857 0 0 Y 25 * * * * * * * * * * * * * * * * * * * 0 25 0 * * * * * * 1857 0 0 K 26 * * * * * * * * 438 * * 1935 * * * * * * * * 26 0 * * * * * * 1857 0 0 S 27 * * * 983 * * * * * * * * * * * 1017 * * * * 27 0 * * * * * * 1857 0 0 E 28 * * * 466 * * * * * * * 1857 * * * * * * * * 28 0 * * * * * * 1857 0 0 S 29 * * 1857 * * * * * * * * 2122 * * * 1017 * * * * 29 0 * * * * * * 1857 0 0 E 30 1857 * 2122 2104 * 1935 * * * * * * * * * * * * * * 30 0 * * * * * * 1857 0 0 A 31 2104 * 2122 * * * * * * * * * * * * 1857 * * * 1935 31 0 * * * * * * 1857 0 0 Y 32 1857 * * * 2122 * * * * * * * * * * 1935 * * * 2104 32 0 * * * * * * 1857 0 0 A 33 466 * * * * * * * * * * * * * * 1857 * * * * 33 0 * * * * * * 1857 0 0 S 34 * * * * * * * * * 1935 * * * * * 438 * * * * 34 0 * * * * * * 1857 0 0 F 35 * * * * 0 * * * * * * * * * * * * * * * 35 0 * * * * * * 1857 0 0 R 36 * * * * * * * * 1935 * * * * 1857 1113 * * * * * 36 0 * * * * * * 1857 0 0 V 37 * * * * * * * * * * * * * * * * * 0 * * 37 0 * * * * * * 1857 0 0 D 38 * * 466 * * * * * * * * * * * * * * 1857 * * 38 0 * * * * * * 1857 0 0 R 39 * * * * * * * * 1857 * * * * * 466 * * * * * 39 0 * * * * * * 1857 0 0 V 40 * * * * * * * 2122 * * * * * * * * * 377 * * 40 0 * * * * * * 1857 0 0 E 41 * * * 0 * * * * * * * * * * * * * * * * 41 0 * * * * * * 1857 0 0 R 42 * * * * * * * * * * * * * * 0 * * * * * 42 0 * * * * * * 1857 0 0 V 43 1935 * * * * * * * * * * * * * * * * 438 * * 43 0 * * * * * * 1857 0 0 T 44 2122 * * * * * * * * * * * * * * * 2104 895 * * 44 0 * * * * * * 1857 0 0 R 45 * * * * * * * * * * * * * 2068 393 * * * * * 45 0 * * * * * * 1783 0 0 V 46 2447 * * * * 2169 * * * * * * * * * * * 751 * * 46 0 * * * * * * 1783 0 0 K 47 * * * * * * * * 2411 * * * * * 301 * * * * * 47 0 * * * * * * 1783 0 0 G 48 * * * * * 0 * * * * * * * * * * * * * * 48 0 * * * * * * 1783 0 0 G 49 * * * * * 0 * * * * * * * * * * * * * * 49 0 * * * * * * 1783 0 0 E 50 * * * 0 * * * * * * * * * * * * * * * * 50 0 * * * * * * 1783 0 0 R 51 * * * * * 1510 * * * * * * * * 624 * * * * * 51 0 * * * * * * 1783 0 0 T 52 * * * * * * * * * * * * * * * 2068 393 * * * 52 0 * * * * * * 1783 0 0 N 53 * * * * * 1300 * * * * * 2411 * * * 2447 * 2169 * * 53 0 * * * * * * 1783 0 0 Y 54 * * * * * * * * * 2068 * * * * * * * * * 393 54 0 * * * * * * 1783 0 0 Y 55 * * * * 802 * * * * * * * * * * * * * * 1230 55 0 * * * * * * 1783 0 0 V 56 * * * * * * * * * 2447 * * * * * * * 292 * * 56 0 * * * * * * 1783 0 0 D 57 * * 0 * * * * * * * * * * * * * * * * * 57 0 * * * * * * 1783 0 0 F 58 * * * * 0 * * * * * * * * * * * * * * * 58 0 * * * * * * 1783 0 0 S 59 * * * * * * * * * * * * * * * 0 * * * * 59 0 * * * * * * 1783 0 0 V 60 * * * * * * * 1118 * * * * * * * * * 891 * * 60 0 * * * * * * 1783 0 0 R 61 * * * * * * * * * * * * * * 363 * 2169 * * * 61 0 * * * * * * 1783 0 0 N 62 * * * * * * * * * * * 0 * * * * * * * * 62 0 * * * * * * 1783 0 0 C 63 * 393 * * * * 2068 * * * * * * * * * * * * * 63 0 * * * * * * 1783 0 0 S 64 * * * * * * * * * * * * 2575 * * 265 * * * * 64 0 * * * * * * 1783 0 0 R 65 * * * * * * * * 2169 * * * * * 1491 2447 2068 * * * 65 363 * 2169 * * * * 1783 0 0 S 66 * * * 1713 * * 1146 * * * * * * * * 2041 * * * * 66 0 * * * * 0 * 1606 0 1000 H 67 2068 * * * * * 891 * * * * * * * 2169 * * * * * 67 393 2068 * 2000 415 * * 1783 1000 0 F 68 * * * * 363 * * * * * * * * * * * * 2169 * * 68 0 * * * * * * 1783 0 0 H 69 2169 * * * * * 2411 * * * * * 1510 * * 2068 * * * * 69 0 * * * * * * 1783 0 0 R 70 * * * * * * * * * * * * * * 0 * * * * * 70 0 * * * * * * 1783 0 0 H 71 * * * * * * 891 * * * * * * * * 2068 * * * 2169 71 393 2068 * 0 * * * 1783 1000 0 P 72 * * * * * * 2447 * * * * * 292 * * * * * * * 72 265 2575 * 0 * * * 1783 1000 0 A 73 2411 * * * * * * 2447 * * * * * * * 2169 * 1300 * * 73 363 2169 * 2585 263 * * 1783 1000 0 F 74 * * * * 363 * * * * * * * * * * * * 2169 * * 74 0 * * * * * * 1783 0 0 G 75 * * * * * 0 * * * * * * * * * * * * * * 75 0 * * * * * * 1783 0 0 F 76 * * * * 0 * * * * * * * * * * * * * * * 76 0 * * * * * * 1783 0 0 C 77 * 0 * * * * * * * * * * * * * * * * * * 77 0 * * * * * * 1783 0 0 R 78 * * * * * * * * * * * 2169 * * 363 * * * * * 78 0 * * * * * * 1783 0 0 A 79 363 * * * * 2169 * * * * * * * * * * * * * * 79 0 * * * * * * 1783 0 0 D 80 * * 0 * * * * * * * * * * * * * * * * * 80 0 * * * * * * 1783 0 0 L 81 * * * * 2068 * * * * 393 * * * * * * * * * * 81 0 * * * * * * 1783 0 0 S 82 2169 * * * 1510 * * * * * * * * * * 2411 * 2068 * * 82 0 * * * * * * 1783 0 0 F 83 * * * * 2411 * * * * * * * * * * * * * * 301 83 0 * * * * * * 1783 0 0 D 84 * * 891 * * * * * * * * 2068 * * * 2169 * * * * 84 0 * * * * * * 1783 0 0 V 85 * * * * * * * * * 2068 * * * * * * * 393 * * 85 0 * * * * * * 1783 0 0 E 86 * * * 891 * 1118 * * * * * * * * * * * * * * 86 0 * * * * * * 1783 0 0 A 87 891 * * * * * * * * * * 2068 * * * * * 2169 * * 87 0 * * * * * * 1783 0 0 S 88 * * * * * * * * * 2575 * * * * * 714 2169 * * * 88 0 * * * * * * 1783 0 0 N 89 * * 762 * * * * * * * * 1285 * * * * * * * * 89 0 * * * * * * 1783 0 0 L 90 * * * * * * * * * 0 * * * * * * * * * * 90 0 * * * * * * 1783 0 0 E 91 * * * 393 * * * * * * * 2068 * * * * * * * * 91 0 * * * * * * 1783 0 0 N 92 * * * * * * * * * * * 624 * * * 2575 2447 * * * 92 0 * * * * * * 1783 0 0 P 93 * * * * * * * * * * * * 0 * * * * * * * 93 0 * * * * * * 1783 0 0 E 94 * * 2068 1285 * * * * 1510 * * * * * * * * * * * 94 0 * * * * * * 1783 0 0 D 95 * * 1429 * * * 2068 * * * * 1358 * * * * * * * * 95 0 * * * * * * 1783 0 0 V 96 * * * * * * * 1301 * 1300 * * * * * * * 2411 * * 96 0 * * * * * * 1783 0 0 I 97 * * * 2169 * * * 2411 * * * * * * * * 2068 1510 * * 97 0 * * * * * * 1783 0 0 I 98 * * * * * * * 1491 * * * * * * * * 2447 1118 * * 98 0 * * * * * * 1783 0 0 S 99 * * 2068 * * * * * * * * 802 * * * 2411 * * * * 99 0 * * * * * * 1783 0 0 C 100 * 0 * * * * * * * * * * * * * * * * * * 100 0 * * * * * * 1783 0 0 E 101 * * * 0 * * * * * * * * * * * * * * * * 101 0 * * * * * * 1783 0 0 V 102 * * * * * * * 1118 * * * * * * * * * 891 * * 102 0 * * * * * * 1783 0 0 F 103 * * * * 0 * * * * * * * * * * * * * * * 103 0 * * * * * * 1783 0 0 N 104 * * 983 * * * * * * * * 1017 * * * * * * * * 104 0 * * * * * * 1857 0 0 F 105 * * * * 2104 * * * * * * 1935 2122 * * * * 1857 * * 105 0 * * * * * * 1857 0 0 E 106 * * * 975 * * * * * * * * * 2122 * * 1935 * * * 106 438 1935 * 3459 138 * * 1857 1000 0 E 107 * * * 466 * * * * 1857 * * * * * * * * * * * 107 0 * * * * * * 1857 0 0 H 108 * * 1857 * * * 1113 * * * * 1935 * * * * * * * * 108 0 * * * * * * 1857 0 0 G 109 * * * 2122 * 377 * * * * * * * * * * * * * * 109 0 * * * * * * 1857 0 0 N 110 * * * * * * * 1857 1935 * * 1113 * * * * * * * * 110 0 * * * * * * 1857 0 0 I 111 * * * * * * * 1113 1935 * * * * * * * * 1857 * * 111 0 * * * * * * 1857 0 0 S 112 * * * * * 1935 * * * * * 2122 1857 * * 2104 * * * * 112 0 * * * * * * 1857 0 0 G 113 * * * * * 438 * * * * 1935 * * * * * * * * * 113 0 * * * * * * 1857 0 0 F 114 * * * * 2104 * * 1935 * * * * * 1857 * * * 2122 * * 114 0 * * * * * * 1857 0 0 R 115 * * * * * * * * * * * * 2122 * 2104 1857 * * * 1935 115 0 * * 0 * * * 1857 0 0 //