HHsearch 1.5 NAME c4cbfB_ FAM FILE c4cbfB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4cbfB_.a3m DATE Sat Nov 9 08:23:22 2013 LENG 74 match states, 74 columns in multiple alignment FILT 10 out of 14 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.1 EVD 0.4629 1.5982 SEQ >ss_dssp CCSSCCSCCSCCCCTTCTTTHHHHHGGGGTSTTHHHHSCTHHHHHHHHHHTTSSCSSSTTTTHHHHTTSSSSCC >sa_dssp EEEEEEEEEEEEEEEEEDEEDEECEEEEDEECECCDEEDEDDDEEADECAEEECEEEECCEDDBDEECEDDEBE >ss_pred CCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC >ss_conf 92125555588655310211004699999999777863803999999999998455046999999999844579 >Consensus SVxlxxHxxxxLxtrxxxWxxxxxxxxxlqrvExWxxrNpgxaxxavxlaxllgxxxxqrvixxiLlllvxPaY >c4cbfB_ SVALTPHSGMGLETRAETWMSSEGAWKHAQRVESWILRNPGFALLAGFMAYMIGQTGIQRTVFFVLMMLVAPSY >UniRef50_P33478(206-278:3396) Methyltransferase/RNA-directed RNA polymerase NS5 n=6644 Tax=root RepID=POLG_DEN1S E=3e-21 s/c=1.40 id=62% cov=100% SVALAPHVGLGLETRTETWMSSEGAWKQIQRVETWALRHPGFTVIALFLAHAIGTSITQKGIIFILLMLVTPS- >UniRef50_B5KM05(201-274:3418) Polyprotein (Fragment) n=1 Tax=Barkedji virus RepID=B5KM05_9FLAV E=5e-15 s/c=1.11 id=43% cov=101% SVAIAPHGNGGLSTRKDKWLAADASMLHLQKVERWMISNPGYAAVAVFLGYMLGTTTVQKAVLVILLLMVAPAY >UniRef50_Q1X881(211-284:3412) Methyltransferase/RNA-directed RNA polymerase NS5 n=397 Tax=Flavivirus RepID=POLG_YEFVN E=4e-10 s/c=0.89 id=37% cov=101% AIDLPTHENHGLKTRQEKWMTGRMGERQLQKIERWLVRNPFFAVTALAIAYLVGNNTTQRVVIALLVLAVGPAY >UniRef50_B9TRQ0(211-284:3442) Polyprotein n=705 Tax=Flavivirus RepID=B9TRQ0_9FLAV E=3e-24 s/c=1.51 id=43% cov=101% SVGISAHGSGGLAHKKTRWMSVDASMEHFQRTERWVLRNPGYALIAGLMGWMLGSNRTQKVMFIILLLLVIPAY >UniRef50_P05769(218-291:3434) Methyltransferase/RNA-directed RNA polymerase NS5 n=2839 Tax=Flavivirus RepID=POLG_MVEV5 E=8e-23 s/c=1.46 id=36% cov=101% SITVQTHGESTLVNKKDAWLDSTKATRYLTKTENWIIRNPGYALVAVVLGWMLGSNTGQKVIFTVLLLLVAPAY >UniRef50_C3VP79(217-291:3435) Polyprotein n=26 Tax=Flaviviridae RepID=C3VP79_9FLAV E=5e-22 s/c=1.40 id=41% cov=101% SVALAPHGTGNLHTgEAPMWKSHTDASKYLQRVERWALRNPGYLGILVAIGWLLGKTTAQRVIYITLLVLIGPAY >UniRef50_P29838(207-279:776) Envelope protein E (Fragment) n=153 Tax=Flavivirus RepID=POLG_LANVY E=7e-07 s/c=0.75 id=26% cov=100% -VLIPSHAQRDLTGRGHQWLEGEAVKAHLTRVEGWVWKNKLFTLSLVMVAWLMVDGLLPRILIVVVALALVPAY >UniRef50_Q04538(204-277:3415) Methyltransferase/RNA-directed RNA polymerase NS5 n=425 Tax=root RepID=POLG_POWVL E=3e-06 s/c=0.71 id=21% cov=101% SVVIPTHAQKDMVGRGHAWLKGDNIRDHVTRVEGWMWKNKLLTAAIVALAWLMVDSWMARVTVILLALSLGPVY >UniRef50_Q7T918(222-295:3425) Polyprotein n=3 Tax=Flavivirus RepID=Q7T918_9FLAV E=4e-16 s/c=1.16 id=40% cov=101% SVALTNHVEETLNTRGERWAVDKIGKQQFEKIERWIIRNPLYALAVVGISYMLGSNVGQRIIICILLLLVAPAY # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 3068 * * * * * * * * * * * * * * 183 * * * * 1 0 * * * * * * 2954 0 0 V 2 * * * * * * * 2313 * * * * * * * * * 324 * * 2 0 * * * * * * 3060 0 0 A 3 1099 * 3202 * * 3472 * * * 3084 * * * * * * 3434 3014 * * 3 0 * * * * * * 3060 0 0 L 4 * * * * * * * 1269 * 1022 * * * * * * * 3434 * * 4 0 * * * * * * 3060 0 0 T 5 1823 * * * * * * * * * * * 1513 3434 * 3472 2441 * * * 5 0 * * * * * * 3060 0 0 P 6 3472 * * * * * * * * * * 3365 1435 * * 3084 1621 * * * 6 0 * * * * * * 3060 0 0 H 7 * * * * * * 0 * * * * * * * * * * * * * 7 0 * * * * * * 3060 0 0 S 8 2048 * * 3202 * 1436 * * * * * * * * * 3521 * 2374 * * 8 0 * * * * * * 3060 0 0 G 9 * * * 2399 * 2451 * * * * * 2383 * 2048 * 3472 3268 * * * 9 0 * * * * * * 3060 0 0 M 10 * * * 3365 * 1852 3202 * 3014 3384 3521 * * * 3084 3434 * * * * 10 0 * * * * * * 3060 0 0 G 11 * * 2048 * * 1105 * * * * * 3268 * * * * 2399 * * * 11 0 * * * * * * 3060 0 0 L 12 * * * * * * * * * 191 3014 * * * * * * * * * 12 0 * * * * * * 3060 0 0 E 13 3472 * * 2451 * * 3268 * 3202 * * 3365 * * * 3590 3084 2208 * * 13 0 * * * * * * 3060 0 0 T 14 * * * * * 2048 3472 * * * * 3434 * * * * 797 * * * 14 158 3268 * 0 * * * 3060 1000 0 R 15 * * * 3268 * * * * 2453 * * * * * 487 * * * * * 15 0 * * * * * * 3060 0 0 A 16 2389 * * * * 1561 * * 1912 * * * * 3202 * * 3384 * * * 16 0 * * * * * * 3060 0 0 E 17 * * 2510 1363 * * 2048 * * * * * 3268 * * * 3472 * * * 17 0 * * * * * * 3060 0 0 T 18 2208 * * * * * * * 2383 * 3268 * * 3084 2417 * 2451 * * * 18 0 * * * * * * 3060 0 0 W 19 * * * * * * * * * * * * * * * * * * 0 * 19 0 * * * * * * 3060 0 0 M 20 3365 * * * * * * * 3268 1261 1389 * * * * * * * * * 20 0 * * * * * * 3060 0 0 S 21 3590 * 3434 3084 * * * * 3014 * * * * * * 1408 3202 3365 * * 21 0 * * * * * * 3060 0 0 S 22 3590 * 3365 * * 1513 3268 * * * * * * * * 1860 * 3472 * * 22 0 * * * * * * 3060 0 0 E 23 * * 1752 1733 * * * * 3365 * * * * * 3202 * 2348 * * * 23 0 * * * * * * 3060 0 0 G 24 1780 * 3268 * * 2451 * 3365 3434 * 3202 3014 * * * * * * * * 24 0 * * * * * * 3060 0 0 A 25 1399 * * * * 2281 * 3014 * * * * * * * 2530 * 3084 * * 25 0 * * * * * * 3060 0 0 W 26 * * * 3202 * * * * 2217 * 2530 * * * 3014 3268 3434 * 2451 * 26 0 * * * * * * 3060 0 0 K 27 3084 * 3014 3472 * * * * 1802 3590 * * * 3365 2313 * * * * * 27 0 * * * * * * 3060 0 0 H 28 * * * * * * 994 * * * * * * 1729 * * * * * 2348 28 0 * * * * * * 3060 0 0 A 29 3521 * * * 2417 * * 3384 * 983 * * * * * * * 3014 * * 29 0 * * * * * * 3060 0 0 Q 30 * * * 3365 * * * * * * * * * 815 * * 1581 * * * 30 0 * * * * * * 3060 0 0 R 31 * * * * * * * * 1391 * * * * * 693 * * * * * 31 0 * * * * * * 3060 0 0 V 32 * * * * * * * 2281 * * * * * * * * 2453 709 * * 32 0 * * * * * * 3060 0 0 E 33 * * * 0 * * * * * * * * * * * * * * * * 33 0 * * * * * * 3060 0 0 S 34 * * * * * 2048 * * * * * 3434 * * 1051 3521 3384 * * * 34 0 * * * * * * 3060 0 0 W 35 * * * * * * * * * * * * * * * * * * 0 * 35 0 * * * * * * 3060 0 0 I 36 2325 * * * * * * 1853 * 3202 2273 * * * * * * 2265 * * 36 0 * * * * * * 3060 0 0 L 37 * * * * * * * 1875 * 1408 * * * * * * * 3202 2048 * 37 0 * * * * * * 3060 0 0 R 38 * * * * * * * * 2048 * * * * * 567 3590 * * * * 38 0 * * * * * * 3060 0 0 N 39 * * * * * * 3384 * * * * 145 * * * * * * * * 39 0 * * * * * * 3060 0 0 P 40 * * * * * * * * 2048 * * * 399 * * * * * * * 40 0 * * * * * * 3060 0 0 G 41 * * * * 3202 856 * * * 1561 * * * * * * * * * * 41 0 * * * * * * 3060 0 0 F 42 * * * * 1288 * * * * 3014 * * * * * * * * * 1100 42 0 * * * * * * 3060 0 0 A 43 840 * * * * * * * * 3268 * * * * * * 1567 * * * 43 0 * * * * * * 3060 0 0 L 44 2273 * * * * 3268 * * * 1044 * * * * * * * 2290 * * 44 0 * * * * * * 3060 0 0 L 45 2178 * * * * * * 1787 * 3521 * * * * * 3084 3202 2510 * * 45 0 * * * * * * 3060 0 0 A 46 843 * * * * * * 3014 * 2173 * * * * * * * 3365 * * 46 0 * * * * * * 3060 0 0 G 47 * * * * * 2496 * * * 2290 * * * * * * * 694 * * 47 0 * * * * * * 3060 0 0 F 48 1572 * * * 1911 3365 * * * 3472 3084 * * * * * * 3434 * * 48 0 * * * * * * 3060 0 0 M 49 * * * * * * * 1691 * 1339 2496 * * * * * * 3084 * * 49 0 * * * * * * 3060 0 0 A 50 907 * * * * 1436 * * * * * * * * * 3365 * * * * 50 0 * * * * * * 3060 0 0 Y 51 * * * * * * 3384 * * * * * * * * * * * 921 1412 51 0 * * * * * * 3060 0 0 M 52 3384 * * * * * * * * 1138 1152 * * * * * * * * * 52 0 * * * * * * 3060 0 0 I 53 * * * * * * * 2451 * 1100 2048 * * * * * * 3202 * * 53 0 * * * * * * 3060 0 0 G 54 * * * * * 399 * * * * * * * * * * * 2048 * * 54 0 * * * * * * 3060 0 0 Q 55 * * 2048 * * * * * 3268 * * 3202 * 3521 * 1838 2483 * * * 55 0 * * * * * * 3060 0 0 T 56 * * * * * 3084 * * * * * 1364 * * * 2187 1868 * * * 56 0 * * * * * * 3060 0 0 G 57 * * * * * 3521 * 3384 * 3084 * * * * 3472 * 1365 3365 3014 * 57 0 * * * * * * 3060 0 0 I 58 3268 * * * * 2399 * 3521 * 3084 3014 * * * * * 1763 3590 * * 58 0 * * * * * * 3060 0 0 Q 59 3014 * * * * * * * * * * * 3084 399 * * * * * * 59 0 * * * * * * 3060 0 0 R 60 * * * * * * * * 1468 * * * * * 647 * * * * * 60 0 * * * * * * 3060 0 0 T 61 3590 * * * * 3384 * 2217 * * * * * * * * 3521 946 * * 61 0 * * * * * * 3060 0 0 V 62 * * * * * * * 1361 * 3084 3472 * * * * * 3014 1843 * * 62 0 * * * * * * 3060 0 0 F 63 * * * * 1890 * * 1253 * 3590 * * * * * * * 3014 * 3268 63 0 * * * * * * 3060 0 0 F 64 3202 3365 * * 2451 * * 1654 * * * * * * * * 3434 2315 * * 64 0 * * * * * * 3060 0 0 V 65 * * * * * * * 1450 * 2104 * * * * * * 3268 1749 * * 65 0 * * * * * * 3060 0 0 L 66 * * * * * * * * * 181 * * * * * * * 3084 * * 66 0 * * * * * * 3060 0 0 M 67 2048 * * * * * * * * 830 3521 * * * * * * 3202 * * 67 0 * * * * * * 3060 0 0 M 68 * * * * * * * * * 487 2451 * * * * * * 3268 * * 68 0 * * * * * * 3060 0 0 L 69 2141 * * * * * * * * 820 3590 * * * * 3014 * * * * 69 0 * * * * * * 3060 0 0 V 70 * * * * * * * 3268 * 2048 * * * * * * * 612 * * 70 0 * * * * * * 3060 0 0 A 71 1475 * * * * 1572 * 3472 * * * * * * * * 3384 3084 * * 71 0 * * * * * * 3060 0 0 P 72 * * * * * * * * * * * * 0 * * * * * * * 72 0 * * * * * * 3060 0 0 S 73 528 * * * * * * * * * * * * * * 2451 * 3014 * * 73 0 * * * * * * 3060 0 0 Y 74 * * * * * * * * * * * * * * * * * * * 0 74 0 * * 0 * * * 3027 0 0 //