HHsearch 1.5 NAME c4c92D_ FAM FILE c4c92D_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4c92D_.a3m DATE Sat Oct 19 08:23:34 2013 LENG 84 match states, 84 columns in multiple alignment FILT 108 out of 465 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.5 EVD 0.4466 0.2340 SEQ >ss_dssp CHHHHHHHTSTTCEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEEHHHHHHTTSCSSTTCCEEEEEEEECGGGEEEEEECCC >sa_dssp EEDBCEBDECDEDEBCABBEECBBBCBCADDBCDECBACACEACDCDDECCDEDEDEDDEEDDDEDEECDBEBEDBDDCEDCEE >ss_pred CCCHHHHHHHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEECCC >ss_conf 900777988489889999849969999999987856759976899923687654444555524752059990780899981597 >Consensus xlPlxlLxxxxgxxVxVxLkxgxxxxGxLxxxDxxmNixLxdxxexxxxxxxxxxxxxxxxxxxxlxxxxiRGxxIxxixlpdx >c4c92D_ MLPLYLLTNAKGQQMQIELKNGEIIQGILTNVDNWMNLTLSNVTEYSEESAINSEDNAESSKAVKLNEIYIRGTFIKFIKLQDN >UniRef50_UPI000186E352(22-91:144) conserved hypothetical protein n=1 Tax=Pediculus humanus corporis RepID=UPI000186E352 E=2e-06 s/c=0.76 id=23% cov=85% ---LCLVKALENRCTTIDLRNEMSVTGKITEVDAYMNIVLSDAAVFDTDGECQY-----------FPVLHVQARNIRNVHIPDN >UniRef50_Q00UL7(55-151:173) Putative Sm protein F (ISS) n=1 Tax=Ostreococcus tauri RepID=Q00UL7_OSTTA E=1e-08 s/c=0.62 id=20% cov=88% --PSDFLRAIEGKTVLVRLNSGADYRgarsrrsiGVLACLDGYMNIAMEqtedsttrarrvgrarDATRLTMACTLDAQEYVNGQLKNKYGDAFIRGNN- -------- >UniRef50_A8BZP8(6-75:90) Small nuclear ribonucleoprotein Sm D3, putative n=3 Tax=Giardia intestinalis RepID=A8BZP8_GIALA E=8e-09 s/c=0.88 id=24% cov=85% --PIQLLFEAIDMCVSVETRTGSIYEGKLVSVEPTLSVTISNCTITHP-----------TGQKETAQTVMLRGSEVRFVSVPN- >UniRef50_A8QCC6(13-86:168) Small nuclear ribonucleoprotein-associated protein homolog F9F13.90-Arabidopsis thaliana, putative n=1 Tax=Brugia malayi RepID=A8QCC6_BRUMA E=4e-08 s/c=0.80 id=22% cov=88% -----------NRKMKVVLLDSRTFVGYFKAFDKHMNILLCDCEELRRIKPKPGKKIAEGEEKRTLGLVLLRGEHIVSMTVQSN >UniRef50_C4QFF3(336-403:850) Mername-AA168 protein (M67 family) n=1 Tax=Schistosoma mansoni RepID=C4QFF3_SCHMA E=2e-06 s/c=0.78 id=22% cov=80% ----------IGKPVTVILLDETRITGRLCSCDGLMNLQLDSGVIIRK------PDSDRLNAVIVVETIMIFGKRIRYVTVP-- >UniRef50_Q9Y7M4(10-93:93) Probable U6 snRNA-associated Sm-like protein LSm3 n=38 Tax=Eukaryota RepID=LSM3_SCHPO E=4e-12 s/c=0.86 id=19% cov=99% --PLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEivTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAPPRN >UniRef50_Q3LVZ4(17-101:101) mRNA splicing factor n=1 Tax=Bigelowiella natans RepID=Q3LVZ4_BIGNA E=3e-06 s/c=0.62 id=18% cov=85% -----------NSKIIISSNDNHKFYGFIRGFDKHCNLMLEDVTEIWKEETTDARSLKKKVVIkeKFIPKLFFRGDAVILITI--- >UniRef50_Q6BIX4(1-76:99) DEHA2G06886p n=3 Tax=Saccharomycetales RepID=Q6BIX4_DEBHA E=4e-06 s/c=0.69 id=25% cov=68% -----------------------LFEGTLQGFDNSTNVIINNCIERLIYP-----DEQDDNQEIPLGLYLMRGGNIVCIGEVDD >UniRef50_Q4CXB7(84-161:163) U6 snRNA-associated Sm-like protein LSm3p n=5 Tax=Trypanosoma RepID=Q4CXB7_TRYCR E=5e-06 s/c=0.67 id=25% cov=94% MDPFAFIVQGLEKPVRVHTVSNETVDGTLLAVDDHCNVMLRGWKVVG-DDTKGVEGPASSSLLAPIR--FIRGAQIKTITL--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 3211 * * 637 * * * * * * 2005 * * 1 0 * * * * * * 4743 0 0 L 2 * * 4429 * 5123 * * 2566 * 771 4135 * * * 5111 * * 4933 * 4279 2 0 * * * * * * 5500 0 0 P 3 * * * * 3542 * * * * * * * 177 * * * * * * 5074 3 63 * 4556 * * * * 6217 0 0 L 4 * * * * 3591 * * 2157 4933 935 5781 5906 * 5779 * 5067 5850 * * 4770 4 0 * * * * 0 * 6306 0 1089 Y 5 4376 4406 3593 3201 * * 5887 * 2360 5779 * 5612 5060 4173 4460 2334 3562 5865 * 4985 5 37 5301 * 3459 138 * * 6562 1000 0 L 6 5936 * 6039 * 2805 * * 4082 6232 1064 6400 * * * * * 6305 2157 * 5265 6 40 5194 * 1585 585 * * 6813 1000 0 L 7 * * * * 3958 * * 2956 * 470 5499 * * * * * * 3991 * * 7 0 * * * * * * 7178 0 0 T 8 4755 5178 4957 4212 5810 * 3560 * 2510 4262 * 4495 6063 3457 2134 4611 4080 5070 * 6531 8 21 6144 * 1585 585 * * 7178 1000 0 N 9 3223 * 4190 2989 * 5393 5247 * 2882 4870 * 2880 * 4141 5083 2527 3370 * * * 9 0 * * * * * * 7178 0 0 A 10 2111 3993 * 6013 3313 4917 * 4089 * 2272 4379 5673 * * * 3136 5983 5947 5192 4322 10 0 * * * * * * 7187 0 0 K 11 6033 * * 3133 * * * 2718 3363 2458 * * * 3336 3924 6214 4514 2201 * * 11 33 5453 * 0 * * * 7321 1000 0 G 12 * * 3874 3638 6257 954 * * 6256 * * 1896 * 6223 5212 * * * * * 12 0 * * * * * * 7711 0 0 Q 13 6650 * 6963 3477 5666 * 2863 * 1608 6227 6567 4993 * 3715 3071 3811 4001 * * 5454 13 46 4991 * 481 1819 * * 7768 1560 0 Q 14 * 5642 5941 3364 * * * 3950 3545 3933 * 4575 3086 3347 2420 4800 3983 3623 * 5289 14 0 * * * * * * 7768 0 0 M 15 * * * * * * * 2155 * 3389 4064 * * * * 6567 4718 807 * * 15 0 * * * * * * 8042 0 0 Q 16 * * * 6625 5825 * 4970 4215 3918 2623 5288 6814 * 5576 2865 3189 2298 3231 6000 5055 16 0 * * * * * * 8042 0 0 I 17 6649 6493 * * * * * 1668 * 4415 * * * * * * * 696 * * 17 0 * * * * * * 8042 0 0 E 18 5076 * 4549 1523 * * 4081 4953 2865 4686 4771 5133 * 4696 4094 6224 4668 3647 * 5850 18 0 * * * * * * 8042 0 0 L 19 6883 5055 * * 4815 * * 5134 * 693 4001 * * * * 6228 2558 4912 * * 19 13 * 6749 * * * * 8048 0 0 K 20 5146 * 5458 6842 6543 * 5364 6504 1348 4783 6888 3802 6566 4922 2239 4515 4131 5683 * 6768 20 11 7019 * 1000 1000 0 * 8061 1000 1000 N 21 5201 * 1710 5967 * 3216 5025 * 6571 * * 1731 * * 6646 3249 3894 * 5745 * 21 8 7530 * 0 * * * 8048 1000 0 G 22 6416 * 2958 3703 * 823 6468 * 4733 * * 2998 * 7308 6654 5784 * * * 6819 22 0 * * * * * * 8048 0 0 E 23 4990 5778 5136 3280 6716 * 5501 4066 3079 4477 4967 * * 7379 1874 3566 3135 4418 * 6883 23 9 7295 * 0 * * * 8048 1000 0 I 24 4768 * 5443 2895 6582 5435 4874 4759 4040 2985 6076 * * 4864 4817 3398 2399 3068 * 5272 24 0 * * * * * * 8058 0 0 I 25 4440 * * * 3329 * * 2182 * 2429 6174 * * * * * 6737 2477 * 2026 25 0 * * * * * * 8060 0 0 Q 26 6201 7185 5091 3404 6572 * 6174 3144 4554 5684 6352 4005 * 5074 2551 3871 3474 2996 5335 3778 26 16 6510 * 3000 193 * * 8060 1000 0 G 27 5684 * * * * 28 * * * * * * * * * * * * * * 27 13 6823 * 2585 263 * * 8060 1000 0 I 28 * * * 6077 5050 * 4656 2732 3438 4497 6094 7024 * 5180 3427 4915 1910 2729 * 4823 28 34 5437 * 2000 415 * * 8060 1428 0 L 29 * * * * 3970 * * 3261 * 546 4884 * * * * * 6667 3277 * * 29 0 * * * * * * 8060 0 0 T 30 5129 5214 4934 3504 6663 6925 4798 3141 2232 3942 4302 6843 * 4241 4382 4961 4194 2928 * * 30 0 * * * * * * 8060 0 0 N 31 2391 3738 5323 3947 6361 2420 * * * 5549 6845 3427 * 5697 5425 2107 5363 6201 * 6636 31 0 * * * * * * 8060 0 0 V 32 3958 3353 * * 2092 * * 3838 * 3928 * * * * * 4735 4511 1883 6799 3237 32 0 * * * * * * 8060 0 0 D 33 * * 220 3746 * 6312 * * * * * 6388 * * * 5114 * 6240 * * 33 0 * * * * * * 8060 0 0 N 34 4004 * 3029 3796 * 3438 4846 4718 3280 * * 3568 3364 2569 3617 5392 * 5651 * * 34 0 * * * * * * 8060 0 0 W 35 4277 6666 4551 6388 2453 5579 2666 6831 6673 3546 5119 3727 * 4452 4923 6966 4409 * 5314 2685 35 0 * * * * * * 8060 0 0 M 36 4373 4538 * * 5358 5450 * * 6583 2957 1024 5873 7102 5187 6569 3865 4968 5135 5007 6996 36 13 6831 * 0 * * * 8060 1000 0 N 37 * * 4323 * * * 6575 * * * * 141 * * * 5722 6201 * * * 37 0 * * * * * * 8060 0 0 L 38 6133 3660 * * 6240 * * 1889 * 1719 2743 * * * * 6909 5622 2819 * * 38 14 * 6663 * * * * 8060 0 0 T 39 5621 6697 * 4662 5293 * 4528 2565 4131 4199 5341 4929 * 4176 6866 5044 2929 1915 6627 5451 39 0 * * * * * 0 8056 0 1000 L 40 * * * * 6584 * * 3483 * 318 3545 * * * * * * 6348 * * 40 0 * * * * * 0 8056 0 1000 S 41 4437 6763 3054 2656 * 5030 6588 4811 3247 5536 * 5354 * 4595 3998 2533 2896 5772 * 6927 41 28 6474 7002 4000 93 * 0 8056 1000 1000 N 42 * 6625 1380 3687 * 4391 4524 * 4450 * * 1771 * 4938 * 4720 * * * 5177 42 0 * * * * 850 1167 8056 0 1527 V 43 1915 2491 * * * 5767 * 4373 * * * * 6170 * * 5896 2919 1660 6488 * 43 11 * 6996 * * * 0 8060 0 1000 T 44 5724 5513 5715 3519 * * * 3120 3091 6680 7265 * * 4533 3985 3886 2063 2471 * 6558 44 33 6083 6970 1000 1000 * 0 8064 1000 1602 E 45 6170 4815 5755 1115 4442 * 5657 3525 * 4131 6795 * * 5074 3469 * 6842 3290 * 5590 45 65 6750 4854 1000 1000 * 0 8061 1000 1920 Y 46 * 5538 6857 6517 4700 * 5692 3072 4546 3304 5649 * 6627 5219 3646 7010 2034 2967 7086 3130 46 95 5473 4590 1796 490 * 0 8031 1742 3149 S 47 6591 * 3035 5581 * 3965 4975 3098 4872 3782 5028 5605 * 4612 3325 3484 3802 4166 4165 3992 47 96 6434 4245 0 * 2953 199 7851 1000 3896 E 48 5720 * 5205 3895 4432 4874 6839 4099 2790 6588 4715 4081 2481 4851 3006 4948 3707 6552 * 5091 48 125 4896 4344 2679 245 3214 165 7785 2229 4506 E 49 4151 * 1996 2462 * 3946 4223 5340 * 4386 * 2897 4790 5956 6337 4740 5451 4670 * 5498 49 177 * 3118 * * 3301 154 7847 0 4520 S 50 5076 5171 2973 3893 * 3285 6274 5038 3070 4785 * 4011 3092 4285 4217 3201 5959 4737 * * 50 35 * 5391 * * * 0 7689 0 5019 A 51 3742 * 3797 3044 6780 3864 5301 5379 2797 4581 * 3628 4692 5914 4061 3433 3626 4332 * * 51 34 * 5424 * * 3934 98 7651 0 5128 I 52 4596 5819 3632 3203 5808 4478 * 3851 3028 3325 6076 4013 5310 3786 3855 4703 3954 4299 * * 52 25 * 5865 * * 3442 139 7521 0 5135 N 53 * * 4852 3631 4537 3008 4801 4578 4601 4664 * 3675 3179 4304 3992 3539 3742 5246 * 3845 53 125 6342 3822 2000 415 3217 164 7279 1000 5010 S 54 2399 * 4763 4038 5600 3520 4962 6313 3780 5063 * 4046 4815 5217 4504 3398 4163 3606 * 4114 54 232 4538 3244 3019 190 3589 125 7250 1749 5584 E 55 6093 5310 5292 2057 5121 4966 4820 * 2239 4956 5812 5063 4928 4309 3582 4466 5113 3930 * * 55 178 * 3104 * * 3420 142 7088 0 5898 D 56 6008 * 2607 2495 5784 3988 * 5048 2802 4332 6022 4218 * 5599 * 3298 4597 4577 5837 4432 56 66 * 4489 * * 2679 245 7293 0 6185 N 57 5143 * 3783 3665 * 2767 * 3904 3567 4156 4984 3656 4274 6439 5619 2937 3627 5608 * 4658 57 93 6140 4370 3700 115 4501 65 7051 1000 5872 A 58 2737 5545 5030 4440 5372 3863 * * 2759 3753 * 5640 5320 4298 5001 3609 4219 2959 * 4449 58 87 5053 5147 3865 103 2579 264 7328 1565 5896 E 59 3490 5103 2896 3393 * 3987 5515 4403 2767 6069 * 3753 4991 5122 3609 4099 4940 * * 4291 59 98 * 3925 * * 3399 144 7135 0 5651 S 60 4498 5748 5909 6263 * 2338 * 4401 3482 4419 * 3071 4045 5974 3807 3376 3497 5891 * 4122 60 50 5831 5928 4524 64 1803 487 7144 1000 5804 S 61 5324 * 3933 3066 * 2223 6002 4612 3333 * * 2794 3881 5255 * 4559 4530 4274 * 4488 61 63 6133 5137 2585 263 4384 71 7151 1000 5223 K 62 3896 * 5292 3479 6169 5764 4548 4167 3084 5004 4488 4044 4561 2757 3847 3972 4300 4100 * * 62 25 5864 * 5492 32 2705 240 7268 1000 5378 A 63 4304 * 4040 4715 3273 6480 * 4298 2927 3951 5851 * 3842 5182 4717 4981 2494 3146 * 6146 63 56 4708 * 2794 225 3014 191 7159 1730 5196 V 64 3782 * * 4731 5024 6374 6368 3421 4442 3894 4465 5103 * * 2118 3430 3919 3188 4543 6406 64 69 6031 5000 2000 415 1825 478 7166 1000 5140 K 65 6356 * 6389 4380 3447 6483 3408 6175 2151 * 4750 4192 4707 4635 3541 2856 3753 5435 * * 65 0 * * * * 1746 511 7196 0 4774 L 66 5209 6442 * * 3605 * 5599 2534 * 1312 3664 * * * * 5739 * 3111 * 3840 66 0 * * * * 1411 680 7260 0 4304 N 67 5324 * 3462 2772 * 1619 * * 3953 * * 4552 3271 3557 4776 3895 * 6263 * * 67 18 * 6334 * * 1505 626 7347 0 3557 E 68 * * 4005 2626 6880 * 6450 * 3894 2261 5091 3232 * 4060 3386 4598 3167 5663 * 5950 68 16 6520 * 0 * 1040 961 7357 1000 3058 I 69 4055 3574 * 6643 4053 * * 2682 * 2701 3822 * * * * 6814 5022 1806 * 3651 69 0 * * * * 1356 715 7341 0 2052 Y 70 * * * * 1849 * 4532 3848 * 2700 3720 4838 * * * 4534 6484 2532 * 3086 70 0 * * * * 0 * 7356 0 1557 I 71 * 4848 * * 5904 * * 1205 * 2405 6471 * * * * * * 1667 * * 71 0 * * * * * * 7381 0 0 R 72 6409 * * * 5474 * * 6438 3552 * 6011 * 6091 4262 368 6397 * * * * 72 0 * * * * * * 7360 0 0 G 73 4143 5516 * 5652 6129 262 * * * * * 5891 * * * 4769 * * * * 73 0 * * * * * * 7360 0 0 T 74 5133 5648 2393 3982 * 5334 * 6412 4244 * * 2551 5436 5358 3607 2065 3849 * * * 74 0 * * * * * * 7372 0 0 F 75 4640 6709 * 5051 5117 5665 3870 * 6381 4974 4435 1936 * 3623 5452 2173 3497 4735 * * 75 0 * * * * * * 7373 0 0 I 76 * * * * * * * 697 * 6316 * * * * * * 6219 1485 * * 76 0 * * * * * * 7366 0 0 K 77 5118 * * 5054 * * * 3493 3262 3183 6290 * * 4948 1562 5201 5305 2310 * * 77 0 * * * * * * 7234 0 0 F 78 6828 5180 * * 2143 * 5670 5874 * 2547 5427 5041 * 4133 * 3609 4586 6338 * 1822 78 30 5584 * 0 * * * 7234 1000 0 I 79 * * * * 3938 * * 1342 * 3810 3662 * * * * * * 1359 * * 79 0 * * * * * * 7227 0 0 K 80 3770 5562 4905 5153 * 3695 2849 3163 4566 5228 5804 * * 3770 2996 3398 3543 4973 * 5762 80 16 6493 * 0 * * * 7058 1000 0 L 81 * * * 4430 4003 * * 1847 * 1369 4624 * 4021 * * * 5835 3231 * * 81 26 5819 * 1000 1000 * * 6993 1000 0 Q 82 5717 * 3917 5871 * * * * 5820 * 5516 4312 696 3777 5991 5851 6068 3845 * * 82 0 * * * * * * 6834 0 0 D 83 6047 * 665 2907 * * * * 3726 * * 4501 5541 * 5104 4311 * * * * 83 0 * * * * * * 6457 0 0 N 84 * * 914 2251 * * * * * * * 1948 * * * * * * * * 84 0 * * 0 * * * 5144 0 0 //