HHsearch 1.5 NAME c4c92B_ FAM FILE c4c92B_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4c92B_.a3m DATE Sat Oct 19 08:25:57 2013 LENG 105 match states, 105 columns in multiple alignment FILT 126 out of 332 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.6 EVD 0.4156 -0.7653 SEQ >ss_dssp CCCTTCSSTTCHHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEECCCSSSCCCTTCCCEEECGGGEEEEECCGGGCCHHHHHHHHHHHH HHHTC >sa_dssp EEBEBCEDEEDAECABBDDACEDEBCABBEDECDBDBCADCBCEEDBBDACECDDDEDEEDEEEDEDEDCEBECEDCDDCDDEDECCDDECCECADECCE ECDEE >ss_pred CCCEECCCHHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCEEEEEEECCHHCCHHHHHHHHHHHH HHCCC >ss_conf 9740003024689999998579889999839969999999865876189998999836787530023338997153899994700043688753325778 74159 >Consensus xxxxxxxxxxxlxxxfLxxlxgxxVxVxLkxgxxxxGxLxxxDxxMNlxLxdaxxxxxxxxxxxxxxxxvfIRGsxIryVxlpxxxxdxxxlxxxxrkex xxxKx >c4c92B_ SENLYFQGSGSLFFSFFKTLVDQEVVVELKNDIEIKGTLQSVDQFLNLKLDNISCTDEKKYPHLGSVRNIFIRGSTVRYVYLNKNMVDTNLLQDATRREV MTERK >UniRef50_Q16J66(22-107:141) Putative uncharacterized protein n=3 Tax=Culicini RepID=Q16J66_AEDAE E=8e-06 s/c=0.60 id=21% cov=83% -----------------QCLVNRNILIDLRNESSVAGKITNVDGFMNISMENVVLID--QLGKHFRMEEFMIYPRYVRYIHIPESIEIVPALEEHIKRET TRKPR >UniRef50_Q54F84(29-123:137) Putative uncharacterized protein DDB_G0291015 n=1 Tax=Dictyostelium discoideum RepID=Y1015_DICDI E=5e-10 s/c=0.69 id=24% cov=86% ---------------VFTALRGTQITIQLRSNCEIYGTITNVDAYLNIELSDAKLTNTRyKNKRDEHVQEILIQSRNIRFIQIPD-KIDLNSLLYLYSKQ LSQSKK >UniRef50_A8P264(17-127:163) Probable U6 snRNA-associated Sm-like protein LSm4, putative n=2 Tax=Bilateria RepID=A8P264_BRUMA E=3e-21 s/c=0.92 id=26% cov=97% --NLAFLGLkalrnlemLQLPLSLLRTAQNHPMLVELKNGETYNGHLVACDAWMNIHLRDAICTSRDG-DRFLKMQEVYVRGSTIKYLRIPDDVVELvkE EVKEVRRQQKDQQR- >UniRef50_A4RU45(14-93:123) Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4RU45_OSTLU E=5e-13 s/c=0.94 id=25% cov=73% ---------------FIQALVGTTVVIECRDDVALRGHLEQCDEGMHCTLTNAIRVTPEG--HKTKLERVFVRARMIRYVHFAPTIDPLELIE------- ----- >UniRef50_C5LSK9(11-95:100) Small nuclear ribonucleoprotein, putative n=2 Tax=Perkinsus marinus ATCC 50983 RepID=C5LSK9_9ALVE E=2e-10 s/c=0.79 id=22% cov=77% ---------------FLREVRGCGVRVRLNDGTDYTGQLLALDGFMNLAMDDAIEFPDgvNSGSEGRRYGQAVIRGNNVLYISMLERKQEEEQADDA--- ------- >UniRef50_Q4DHE4(10-103:117) U6 snRNA-associated Sm-like protein LSm5p n=4 Tax=Trypanosoma RepID=Q4DHE4_TRYCR E=5e-07 s/c=0.59 id=26% cov=81% --------------------LGYRLSVELDDGSTLIGRLVSLGPTSNLILTDVERVRPLKRRRGSSKTECynsvlFVRGSSVVSVHHTNNItTDRSVVDT LTDRQMETSK- >UniRef50_C4M4I4(8-75:81) Small nuclear ribonucleo protein G, putative n=1 Tax=Entamoeba histolytica HM-1:IMSS RepID=C4M4I4_ENTHI E=1e-06 s/c=0.80 id=23% cov=63% ----------------LKHYLEKRILVKIHGKRSIIGVLSGYDEYMNLVLDEAYDASNPDTDKHIPIGMIMIRGNSILSVE------------------- ----- >UniRef50_P47017(48-140:172) Sm-like protein LSm1 n=16 Tax=Saccharomycetales RepID=LSM1_YEAST E=7e-07 s/c=0.59 id=21% cov=82% --------------------VDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDrgiFMIRGENVVMlgeVDIDKEDQPLEAMER IPFKEAWLTKQ # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 1000 0 0 E 2 * * * 0 * * * * * * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 N 3 * * * * * * * * * * * 0 * * * * * * * * 3 0 * * * * * * 1653 0 0 L 4 * * * * * * * * * 0 * * * * * * * * * * 4 0 * * * * * * 1653 0 0 Y 5 1014 * * * * * * * * * * * * * * * * * * 986 5 0 * * * * * * 1653 0 0 F 6 * * * * 0 * * * * * * * * * * * * * * * 6 0 * * * * * * 1653 0 0 Q 7 * * * * * * * * * 1014 * * * 986 * * * * * * 7 0 * * * * * * 1653 0 0 G 8 * * * * * 0 * * * * * * * * * * * * * * 8 0 * * * * * * 1653 0 0 S 9 * * * * * * * * * 1014 * * * * * 986 * * * * 9 986 1014 * 3000 193 * * 1653 1000 0 G 10 * * * * * 986 * * * 1014 * * * * * * * * * * 10 0 * * * * * * 1653 0 0 S 11 * * * * * * * * * * * * * 876 * 1136 * * * * 11 0 * * * * * * 2686 0 0 L 12 * * * * 3255 * * * * 160 * * * * * * * * * * 12 0 * * * * * * 3552 0 0 F 13 * * * * 602 * * 2937 * * * * 2980 * * * * * * 3572 13 0 * * * * * * 3709 0 0 F 14 2929 * * * 2005 * * * * 1322 * * * 4171 * * * 4239 * 3168 14 0 * * * * * * 4316 0 0 S 15 4074 4766 4882 2442 * * 3072 4229 5030 * * 3527 * * * 1618 3827 * * * 15 0 * * * * * * 4911 0 0 F 16 * * * 4898 1042 * * * * 2081 * * * * * * * 2990 * 3075 16 0 * * * * * * 5537 0 0 F 17 * * * * 3145 * * 3795 * 482 * * 5296 * * * * 4349 * 5346 17 0 * * * * * * 5738 0 0 K 18 3413 * * 4647 * 5545 6332 * 1728 5890 6227 4236 * 2260 2331 5301 6119 * * * 18 0 * * * * * * 5739 0 0 T 19 2438 6480 5338 3980 * 3737 5426 * 2653 5997 5887 4539 * 4070 5226 2175 3725 * * * 19 0 * * * * * * 5891 0 0 L 20 4037 6145 * * 3808 6678 5408 4339 * 1134 4093 5445 * 5625 6648 6380 6099 4004 * 3128 20 0 * * * * * * 5914 0 0 V 21 6490 * * 4714 * * * 2246 3997 2204 4358 * * 3058 4275 5774 5147 2371 * * 21 0 * * * * * * 5906 0 0 D 22 * * 2933 4008 * 1006 5567 * 6291 * * 2146 * 5597 5761 6645 * * * * 22 0 * * * * * * 5911 0 0 Q 23 * 6843 * 3277 6739 7237 3292 * 1805 5532 5869 5970 * 3295 2893 4564 3529 * * 3971 23 11 7049 * 1000 1000 * * 5878 1000 0 E 24 * 5900 5825 2917 6255 6048 7012 4059 3124 5277 * 4757 4061 3613 2570 3480 3522 4937 * 4630 24 10 7151 * 1000 1000 * * 5886 1000 0 V 25 * * * * * * * 2067 * 3708 4319 * * * * * 3816 827 * * 25 0 * * * * * * 5898 0 0 V 26 * 5493 6810 4135 5091 * 4963 3957 4359 2932 6116 6174 * 4739 3455 3374 2147 3151 * 6100 26 0 * * * * * * 5853 0 0 V 27 6385 5484 * * * * * 1779 * 3558 * * * * * * * 763 * * 27 0 * * * * * * 5849 0 0 E 28 6732 * 4043 1402 6827 * 5164 4664 2678 4529 4592 5408 * 6993 3550 * 4081 4454 * 6274 28 0 * * * * * * 5849 0 0 L 29 * 5025 * * 6664 * * 4014 * 573 4497 * * * * 6846 3089 4443 * 6855 29 0 * * * * * * 5849 0 0 K 30 5209 6281 6384 6509 * * 5422 5500 1270 5846 6212 3377 * 4217 2449 4652 4663 5247 * 7054 30 39 5217 * 235 2732 * * 5849 2003 0 N 31 4890 * 1772 5684 * 3444 6343 * 6657 6980 * 1390 * * 6718 3862 4323 * 5487 * 31 0 * * * * * * 5849 0 0 D 32 6119 * 2978 3185 * 869 6295 * 5332 * * 3292 * * 7173 4499 * * * 6589 32 9 7371 * 0 * * * 5849 1000 0 I 33 5842 5902 4689 3216 6166 * 6812 4525 4541 4435 5423 5909 * 4824 2121 3015 2677 3664 * * 33 7 7688 * 0 * * * 5849 1000 0 E 34 4646 * 5252 2857 6987 * 6718 3712 5354 4008 5040 6699 * 4134 4262 3440 2400 2926 * 4230 34 0 * * * * * * 5849 0 0 I 35 5844 * * * 3736 * * 2220 * 2617 5699 * * * * * 6614 2130 * 1879 35 0 * * * * * * 5849 0 0 K 36 5467 * 6729 3414 5194 * 4385 3297 3673 5819 5226 4981 * 4158 2423 3980 3114 3727 * 4447 36 0 * * * * * * 5848 0 0 G 37 * * * * * 0 * * * * * * * * * * * * * * 37 0 * * * * * * 5848 0 0 T 38 * * * 5386 6069 * 5482 2819 2661 3809 6249 6702 * 4389 3600 6563 1915 3152 * 5241 38 0 * * * * * * 5848 0 0 L 39 * * * * 6282 * * 2999 * 438 6016 * * * * 6283 * 3384 * * 39 0 * * * * * * 5848 0 0 Q 40 4921 5204 4049 3232 6693 7000 5672 4070 3419 3473 4596 6812 * 4178 3816 4016 3277 2724 * * 40 0 * * * * * * 5850 0 0 S 41 2674 5270 4354 3462 6216 2445 6063 * 6731 5660 6056 3478 * 5950 5570 2076 5774 5912 * 5470 41 0 * * * * * * 5848 0 0 V 42 4212 3129 * * 2372 * * 3549 * 4134 * * * * * 4177 4503 1711 * 3453 42 0 * * * * * * 5848 0 0 D 43 * * 234 3614 * 6384 * * * * * 5797 * 6503 * 6249 * 6170 * * 43 20 6207 * 0 * * * 5848 1486 0 Q 44 3095 6758 3071 3767 * 2866 4744 4970 4260 5377 6755 3658 3633 3338 4581 4127 6259 5753 * * 44 0 * * * * * * 5922 0 0 F 45 3873 6306 4822 5951 2307 5398 2943 * 7081 4404 4910 3296 6014 5051 4931 * 3859 * 5471 2717 45 0 * * * * * * 5922 0 0 L 46 4967 6892 * * 4994 5644 * 6447 * 2923 671 6046 * 6558 * 4953 5228 5092 6602 6328 46 0 * * * * * * 5928 0 0 N 47 * * 4936 * * * 5980 * * * * 147 * * * 4949 5943 * * * 47 0 * * * * * * 5928 0 0 L 48 * 3783 * * 4333 * * 2025 * 1490 4219 * * * * * 4603 2465 * * 48 0 * * * * * * 5928 0 0 K 49 5073 6598 * 4365 7084 * 3940 3318 4330 5024 6437 4638 * 4280 5218 4315 2508 1947 6920 4855 49 0 * * * * * * 5934 0 0 L 50 * * * * * * * 3843 * 383 2872 * * * * * * 5228 * * 50 0 * * * * * * 5934 0 0 D 51 5375 5469 2658 3100 * 6018 * 5493 2488 4941 7176 5894 * 6834 3915 2386 3463 4622 * 6902 51 0 * * * * * * 6005 0 0 N 52 6524 * 1442 3673 6227 5258 5023 * 4407 6672 * 1738 * 4839 6443 4071 * * * 6652 52 21 6963 7278 1585 585 * * 6002 1000 0 I 53 1493 3241 * * * 6563 * 4449 * 7468 * * 5633 * * 5582 3320 1574 * * 53 17 6431 * 1000 1000 * 0 6501 1000 1000 S 54 5527 5740 6975 2854 6646 * 6706 3003 2820 5336 * * * 4114 4355 4138 2510 2802 * 5617 54 17 6377 * 0 * * 0 6497 1000 1000 C 55 5837 5062 5067 1816 4651 * 4684 2723 5587 3828 5484 6359 * 6667 3797 * 6607 2774 * 4483 55 73 5692 5055 3000 193 0 * 6728 1000 1000 T 56 6571 6276 5923 5407 4841 * 5425 2905 4381 3317 5720 6517 6350 4479 3938 4757 2060 2937 * 4757 56 14 * 6682 * * 1460 652 6729 0 2053 D 57 3706 7031 2295 6913 5729 3910 5451 3476 3615 6465 5737 4628 6501 4016 5269 2860 3941 6582 * 4593 57 69 5314 5517 2201 354 631 1497 6730 1679 2176 E 58 3822 6053 3021 3983 5829 5411 6521 5432 2743 * 6119 3977 2544 * 3660 3929 4555 5543 * 4469 58 58 6491 5150 1000 1000 1642 557 6737 1000 2142 K 59 6334 * 2485 2768 5293 2910 4681 * 4466 4543 * 2567 4580 5839 5484 4011 4274 * * 6328 59 95 5366 4665 0 * 752 1299 6708 1744 2819 K 60 5842 * 4013 3491 6254 1446 * 5738 3244 5021 6322 4622 5430 3574 4935 3568 * 5710 * * 60 211 * 2876 * * 1537 609 6615 0 2975 Y 61 5338 * 4292 3087 4301 4460 6527 5367 3740 4070 * 2922 6557 4558 5145 3431 2647 4954 6225 5080 61 101 6252 4193 1585 585 1865 463 6595 1000 4447 P 62 4035 5541 4562 4206 * 4170 * 5058 3561 4568 5902 2802 2807 5044 4157 3419 4355 3703 * * 62 218 6638 2941 3000 193 503 1765 6576 1000 4533 H 63 5334 * 6089 2413 5092 5473 2970 5330 2265 5120 5233 4909 6169 3113 3601 6553 * 5995 6130 5701 63 85 * 4127 * * 1043 959 6601 0 4120 L 64 4659 * 5466 4884 2712 4641 5281 3489 4120 3205 4078 * 4879 4565 4633 4753 4292 2826 * 5286 64 130 5084 4149 2851 215 1027 974 6546 1600 4058 G 65 3269 * 4751 4178 3903 3756 6468 3495 4561 3111 4719 5431 5472 5714 5439 2980 4375 5355 4646 4647 65 106 6442 4082 2000 415 1620 568 6424 1000 4053 S 66 6025 * 5336 * 6059 4609 3586 * 2318 * * 3612 3291 3528 3637 2393 3664 * * * 66 122 5220 4205 1764 503 476 1832 6384 1603 4250 V 67 5156 3991 * 6051 3840 6096 * 3360 6174 1800 4077 * * * 5183 4088 * 2998 6390 2962 67 74 6390 4709 0 * 1320 738 6499 1000 3785 R 68 6681 * 2881 2614 * 2032 5746 6267 3429 * 6419 4341 4108 4335 4238 3987 4937 7650 * * 68 38 5276 * 586 1584 774 1268 6550 1735 3544 N 69 5553 * 2958 2508 * * 4693 * 4719 3951 4455 3275 6275 4245 3330 3479 3267 5298 * * 69 38 6122 6437 1585 585 981 1020 6551 1000 2297 I 70 5040 2966 * 6131 3304 * * 2689 * 2830 4956 * * * * 5226 6579 1789 * 3805 70 20 6161 * 2322 322 647 1468 6544 1000 1970 F 71 6307 * * * 1352 * 4600 4454 * 3130 3332 5669 * * * 4130 4779 4180 * 2978 71 26 5817 * 0 * 0 * 6545 1000 1000 I 72 * * * * * * * 755 * 3053 * * * * * * * 1802 * * 72 0 * * * * * * 6548 0 0 R 73 6319 6255 * * 5407 * 6418 * 3265 6730 5907 * * 3722 514 * 6443 6647 * 6468 73 0 * * * * * * 6548 0 0 G 74 4067 4376 * 5730 6160 304 * * * * * 5918 6468 * * 5539 * * * * 74 0 * * * * * * 6548 0 0 S 75 5133 5725 4099 4071 * * * 5344 4695 * * 2297 * 5380 2924 1624 3720 6406 * * 75 0 * * * * * * 6543 0 0 T 76 6457 * * 4939 4697 * 5642 * 4388 4469 4012 1719 * 3651 5380 2312 3278 7720 * 5267 76 0 * * * * * * 6543 0 0 V 77 * * * * * * * 770 * 6379 * * * * * * 6090 1370 * * 77 0 * * * * * * 6543 0 0 R 78 6000 * 6085 6794 6510 * 6681 5564 2989 2778 6361 * * 6132 1149 5432 4253 3411 * * 78 0 * * * * * * 6531 0 0 Y 79 5874 * * * 2332 6404 4715 5162 * 4162 4043 5107 * 4393 * 3751 6370 6148 6489 1316 79 22 6078 * 1585 585 * * 6599 1000 0 V 80 6325 * * * 3741 * * 1560 * 4298 5659 * * * * * * 991 * * 80 19 6294 * 3170 170 * * 6599 1000 0 Y 81 5361 * 4622 4627 7224 3884 2164 3017 6289 4708 5909 6688 * 3970 3584 2886 5159 4754 * 4363 81 18 * 6353 * * * * 6472 0 0 L 82 * * * 5889 3698 * 5793 1894 * 1231 3960 * * * * * 4483 3576 * * 82 0 * * * * 0 * 6413 0 1000 N 83 5286 * 3060 4819 * * * 5890 6024 5931 * 4651 742 5528 * 4555 4862 4881 * * 83 81 * 4195 * * * * 6395 0 0 K 84 4902 * 1853 3294 * * * * 2588 5856 * 3168 2860 4897 * 3587 5670 * * 5730 84 109 * 3781 * * 0 * 6269 0 2275 N 85 5546 * 2553 1855 * 5630 * 5946 * * * 3067 5191 * 3570 3126 3992 4059 * 5201 85 65 5563 5448 0 * 1846 470 6114 1000 2555 M 86 5345 * 2951 2512 * 4464 5080 2466 3453 3364 4530 4231 * 4030 * * * 3863 * * 86 73 4335 * 0 * 1858 466 6307 1752 2533 V 87 5008 * 3045 5264 * * * 2246 4362 2519 6470 4236 * 4300 * * 5081 2040 * * 87 0 * * * * 546 1666 6331 0 2173 D 88 3699 * 1055 2965 * 5618 5107 4208 5407 5583 * 4903 4348 5474 * * 4702 5478 * * 88 0 * * * * * 0 6360 0 1000 T 89 3851 * 5402 2235 4241 * 6210 3654 5237 2717 * * 4406 * 5041 3765 3106 3670 * 5357 89 23 5965 * 1000 1000 * 0 6422 1000 1000 N 90 3349 * * 1880 5263 4917 4359 * 5649 4515 5729 3080 3577 3140 * 3515 5749 5784 * * 90 0 * * * * 0 * 6372 0 1000 L 91 3759 * * 3081 * * 4867 3194 3210 1791 3836 * * 4955 * 4208 * 3170 * * 91 0 * * * * * * 6355 0 0 L 92 3766 * 5179 3370 * * * 4536 * 1034 3530 * 5021 * * * * 2707 * * 92 0 * * * * * * 6466 0 0 Q 93 * * 3468 2035 * * 3388 3565 3038 5112 * * * 1881 4701 * * 5328 * * 93 151 * 3328 * * * * 6466 0 0 D 94 * * 1897 2280 * 4812 4417 * 5144 * * 4308 4620 3143 4404 3617 4599 * * 4622 94 0 * * * * 612 1532 6193 0 2246 A 95 1688 * * 3960 * 4768 4781 3871 3687 3054 * * * 5296 3971 4911 5162 4028 * 3753 95 0 * * * * 0 * 6284 0 1000 T 96 * 3727 * * * * 4705 2864 * * 3751 4803 2627 4727 3580 4849 2005 * 4744 4867 96 0 * * * * * * 6295 0 0 R 97 * * 4639 4458 4402 * * * 2226 3685 5346 5409 5186 4964 1316 4867 4972 * * * 97 0 * * * * * * 6295 0 0 R 98 * * * 5973 * 4467 * * 1767 4169 4949 5040 4393 2779 1763 4687 * * * * 98 49 4911 * 2585 263 * * 6368 1000 0 E 99 * * 4292 1032 * 4187 * * 3978 * * * * 2056 * * 3307 * * * 99 0 * * * * * * 6404 0 0 V 100 2094 * * 2917 5115 * * 4685 5121 3143 4333 * * 4790 3827 3974 3550 3077 * * 100 0 * * * * * * 6282 0 0 M 101 3939 * 3466 3390 * * * * 2868 4113 2984 4717 * * 2954 3559 4271 4676 4411 4720 101 0 * * * * * * 6195 0 0 T 102 * * * 2612 * 4438 * * 2740 4193 4153 3878 * 2574 3088 * 2506 * * * 102 0 * * * * * * 5861 0 0 E 103 * * 4555 1838 * * 4696 5007 2820 * * 4268 * 3117 2894 3196 4169 * * * 103 0 * * * * * * 5400 0 0 R 104 * * * * * * * * 485 * * * 4197 4557 3054 * 5250 * * 4573 104 0 * * * * * * 5208 0 0 K 105 * * * 2352 * * * * 1798 * * * * 1677 2294 * * * * * 105 0 * * 0 * * * 4255 0 0 //