HHsearch 1.5 NAME c4c8qF_ FAM FILE c4c8qF_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4c8qF_.a3m DATE Sat Oct 19 08:22:54 2013 LENG 77 match states, 77 columns in multiple alignment FILT 106 out of 555 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.7 EVD 0.4578 0.9593 SEQ >ss_dssp CHHHHHHHTTTTSEEEEEETTSCEEEEEECCCCSSCCEEEEEEEEESSCTTSCCCEECSSCEEECGGGEEEEEECCC >sa_dssp EEEEEDCEDAEDDDACAABEEBCBBBBDADDBDEEDCACABEACBBEDCDEDDDDDCDEDEBEBEBECCEDCDCCEE >ss_pred CCCHHHHHHHCCCEEEEEECCCCEEEEEEEEECCCCCEEEEEEEEEEECCCCCCEEEECCEEEECCCCEEEEEEEEC >ss_conf 97567899968986999985993999999999886785998679999458886248871679997896799988729 >Consensus xxxxxxLxxxigxxVxVxlxdgxxxxGxLxxxDxxmNlvLxdxxexxxxxxxxxxxxxxgxvxIRGxxIxxIsxxxx >c4c8qF_ SVTTEFLSDIIGKTVNVKLASGLLYSGRLESIDGFMNVALSSATEHYESNNNKLLNKFNSDVFLRGTQVMYISEQKI >UniRef50_A0CCJ3(2-78:138) Chromosome undetermined scaffold_167, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0CCJ3_PARTE E=2e-13 s/c=0.99 id=21% cov=97% SQKSKFFQ-WIDYRVRITLGDGRMLVGTFLAFDKHLNVILSECEEYRirkQGIHEIETKRTLGMIIVRGDNIISLSAE-- >UniRef50_C1E1N0(33-99:159) Predicted protein n=1 Tax=Micromonas sp. RCC299 RepID=C1E1N0_9CHLO E=4e-08 s/c=0.89 id=21% cov=88% -----FVQALVGHLVVIETRDDVTTRGTLVEVDERMNCTLEGAQRVTVEQALEKKNSKFDRMFVRARLIRYV----- >UniRef50_P40204(2-75:77) Small nuclear ribonucleoprotein G n=19 Tax=Ascomycota RepID=RUXG_YEAST E=2e-07 s/c=0.77 id=23% cov=90% -VSTPELKKYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEINGEDPANNHQLGLQTV-IRGNSII------- >UniRef50_C5KT85(6-72:120) Small nuclear ribonucleoprotein Sm D3, putative n=3 Tax=Perkinsus marinus ATCC 50983 RepID=C5KT85_9ALVE E=2e-11 s/c=1.04 id=25% cov=84% ----KLLHESVGHTVTVEMQTGELYRGHLIHTEDNMNLLIAEVVVTRKDG----KQTSLEQAYIRGSKIRYI----- >UniRef50_Q4P8W1(17-85:382) Putative uncharacterized protein n=1 Tax=Ustilago maydis RepID=Q4P8W1_USTMA E=3e-10 s/c=0.96 id=19% cov=91% ------IKNFVGRTSIVHIPDGRAFRGVFICVDSGKNIILADTDETRLTPEGRTTIRNVGMVMIPGEYVVKVEVQ-- >UniRef50_A2DQD7(8-77:107) Sm protein n=1 Tax=Trichomonas vaginalis RepID=A2DQD7_TRIVA E=2e-07 s/c=0.81 id=24% cov=92% ------LQRLLNGLVTVTTVEGLSFQGILMNYDEHMNLVLRQVEE-IPQDNQQREPKRIGLMVMRGCNVSTVEAVQL >UniRef50_Q06217(42-104:110) Small nuclear ribonucleoprotein Sm D2 n=8 Tax=Saccharomycetaceae RepID=SMD2_YEAST E=7e-06 s/c=0.82 id=25% cov=78% -------------PVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEKKGKNVinrERFISKLFLRGDSVIVV----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * S 1 * * * * * * * * * * * * * * * 0 * * * * 1 0 * * * * * * 2712 0 0 V 2 * * * * * * * 1697 * * * * 3281 3386 * 3677 * 1270 * * 2 0 * * * * * * 4116 0 0 T 3 1966 * * * * 3685 * * 3659 * * * 2318 * * 2718 2092 * * * 3 0 * * * * * * 4446 0 0 T 4 * * * * * * * 2786 3998 * 4611 * * * 4247 1391 1655 * * * 4 0 * * * * * * 5075 0 0 E 5 * * 2473 2077 * 4114 * * 2866 * * * 3194 2317 5692 4093 * * * * 5 0 * * * * * * 6049 0 0 F 6 * * * 4572 1378 * * 3396 4492 3112 4636 * * * * 5359 5796 2857 * 3357 6 0 * * * * * * 6352 0 0 L 7 * * * * 4617 * * 3619 * 319 * * * * * * * 3711 * * 7 0 * * * * * * 6735 0 0 S 8 4548 * 5277 3360 5356 6331 5219 * 2155 4180 4590 3509 * 2900 3099 3882 5492 5599 * * 8 17 * 6375 * * * * 6753 0 0 D 9 3409 6040 3310 2877 6347 4043 6030 * 2384 * 6411 3189 6136 6202 4845 2698 4801 * * * 9 0 * * * * 0 * 6796 0 1000 I 10 3203 4474 * 4959 3303 * 6681 4804 * 1583 6159 * * 6794 * 3538 5261 5153 4436 3011 10 0 * * * * * * 6801 0 0 I 11 6071 6152 * 4386 * * * 1976 4389 2041 4493 * * 4876 4883 6247 4735 2215 * * 11 0 * * * * * * 7037 0 0 G 12 6493 * 2385 3919 * 1200 4873 * 6504 * * 2324 * 6310 6464 5209 * * * * 12 0 * * * * * * 7070 0 0 K 13 7093 5827 * 3444 7185 5783 4376 * 1523 4954 5578 6774 * 3618 2848 3023 5172 * * 5122 13 0 * * * * * * 6966 0 0 T 14 * 5467 6618 3778 * 6050 5942 4894 2321 4072 5817 4461 3763 4224 2302 4158 3840 4297 * * 14 29 5667 * 1000 1000 * * 6962 1437 0 V 15 * * * * * * * 2133 * 3283 5339 * * * * 5626 4694 806 * 6172 15 0 * * * * * * 6962 0 0 N 16 7094 5169 * 4990 6680 * 6436 3360 4439 2878 5093 5803 * 5292 2717 4092 2607 3338 4687 4402 16 13 6792 * 1000 1000 * * 6962 1000 0 V 17 * 5324 * * * * * 1715 * 4337 * * * * * * * 687 * * 17 0 * * * * * * 6964 0 0 K 18 6955 * 4436 1939 * * 4558 3450 2558 5707 4821 5587 * 5624 3110 4921 4369 3655 6789 * 18 0 * * * * * * 6964 0 0 L 19 6727 6695 * * 5492 * * 4122 * 783 3820 * * * * 5477 2595 4484 * 5899 19 12 6932 * 2000 415 * * 7107 1000 0 A 20 4392 6414 4531 * * 6801 5684 4549 1702 5691 * 3543 6401 4695 2410 4500 3670 4529 * 6785 20 9 7369 * 1000 1000 * * 7107 1000 0 S 21 5200 * 1393 4404 * 3402 6321 6243 6629 6921 * 2102 * * * 3088 4414 * 6844 * 21 13 * 6788 * * * * 7107 0 0 G 22 7060 * 3220 4902 * 638 5736 * 6697 * * 3106 * 5609 5561 5457 * * * * 22 0 * * * * 0 * 6961 0 1000 L 23 5288 * 5508 3515 * 5938 5359 4840 3630 3727 5673 6016 6785 5020 1772 3433 3182 4505 * 5757 23 10 7182 * 0 * * * 7107 1000 0 L 24 5568 6161 5128 2507 5954 * * 3901 3282 4384 5372 * * 3737 5549 4041 2832 2508 * 5098 24 26 5814 * 612 1532 * * 7107 1680 0 Y 25 5106 * * * 2876 * * 2553 * 2118 5673 * * * * * 5841 2850 * 1953 25 0 * * * * * * 7107 0 0 S 26 6441 * 6565 3206 5915 * 4468 2831 3083 5678 * 5141 * 5350 2676 4174 3759 2637 * 5037 26 14 6712 * 3000 193 * * 7119 1000 0 G 27 5247 * * * * 38 * * * * * * * * * * * * * * 27 0 * * * * * * 7119 0 0 R 28 6051 * 5894 5631 5427 * * 2285 3064 4088 6119 * * 4110 3491 * 2177 2827 * 5805 28 0 * * * * * * 7119 0 0 L 29 * * * * 3207 * * 3129 * 561 5313 * * * * 6401 5958 4420 * * 29 0 * * * * * * 7119 0 0 E 30 4303 5622 4910 3504 6192 6726 4784 3237 3066 3714 4397 6698 * 4076 3237 4658 3727 3198 * * 30 0 * * * * * * 7119 0 0 S 31 2180 3272 5035 4203 6795 2009 * * * 5465 * 3604 * * 6597 2401 6621 7093 * 6439 31 0 * * * * * * 7119 0 0 I 32 4999 5480 * * 1945 * * 2964 * 3856 * * * * * 4419 3522 2380 6357 2725 32 0 * * * * * * 7119 0 0 D 33 * * 170 4040 * 6438 * * * * * 6371 * * * 6334 * 6104 * * 33 25 5837 * 0 * * * 7119 1475 0 G 34 4330 * 3051 3691 * 3635 4662 4725 3046 * 6623 3087 4276 2825 4128 3810 7226 5823 * * 34 0 * * * * * * 7119 0 0 F 35 5169 * 3761 6371 2453 6395 2658 * 6678 4309 * 4554 6945 3937 4006 4702 4045 6623 5284 2643 35 0 * * * * * * 7119 0 0 M 36 3658 3937 * 6500 4183 4084 * 7013 6395 2629 1379 6747 * 5442 5988 6438 4849 4454 6956 5915 36 0 * * * * * * 7119 0 0 N 37 * * 4385 * * 6367 * * * * * 109 * * * 6305 * * * * 37 0 * * * * * * 7119 0 0 V 38 * 4653 * * 5262 * * 1977 * 1441 3485 * * * * * 4554 2474 * * 38 0 * * * * * * 7119 0 0 A 39 4447 6044 * 6393 5901 * 4784 2551 5225 3867 5585 6439 * 4598 6281 4087 3269 1477 * * 39 0 * * * * * * 7119 0 0 L 40 * * * * 5231 * * 3250 * 364 3453 * * * * * * * * * 40 11 * 7013 * * * * 7119 0 0 S 41 4213 6653 3144 2769 5523 4679 6866 6814 3282 5367 * 4421 * 4365 4218 2544 3433 4654 * 5767 41 30 * 5612 * * * 0 7118 0 1000 S 42 6795 * 1296 3848 * 5882 6473 * 4303 * * 1913 * 3772 6710 3828 * * * 5899 42 12 * 6883 * * 1534 611 7085 0 1948 A 43 1610 2364 * 6205 * * * 5310 * * * * 5613 * * 4602 3055 1957 * * 43 17 * 6423 * * * 0 7127 0 2112 T 44 7003 4842 4419 3758 * 6418 * 3432 3921 5801 5722 6738 * 4713 4238 4747 1917 2318 * 5243 44 166 6178 3401 0 * * 0 7115 1000 2429 E 45 6741 6503 4647 871 * * 6169 3962 6431 * 6116 * * 3671 4186 6888 4965 3836 * 4475 45 110 6737 3966 0 * 1810 484 7033 1000 4416 H 46 6288 * 7001 4580 3832 * 5178 3552 4250 3917 5480 * 6488 5384 2915 3974 2418 3383 6672 3486 46 191 4770 3520 2927 203 821 1205 7097 2013 4741 Y 47 4645 6302 * 5486 4324 * 5358 2440 6142 3266 5821 6194 4702 6193 3079 4266 4049 2836 4187 4670 47 84 5121 5182 1799 489 2116 378 6890 2009 4531 E 48 5358 * 3384 3913 4780 4881 5031 4862 2965 5252 4711 5190 3149 6658 3432 3535 4803 4130 * 3971 48 76 5863 4859 3412 142 2030 405 7042 1646 4399 S 49 5262 * 2608 2981 * 2846 4970 6419 4638 4944 6469 3969 6526 3455 6525 3758 3498 4170 * 5518 49 62 5948 5266 2852 215 1178 842 7066 1540 4602 N 50 3893 6943 2942 3599 6273 3473 6115 6693 3009 5773 5547 3919 3436 3922 6021 3172 4934 4744 * * 50 13 * 6757 * * 704 1372 7028 0 4046 N 51 3833 * 3364 2445 * 4612 5059 4643 3465 * * 2728 4303 4397 3920 4283 4787 5163 * 5878 51 108 4638 4979 3161 171 * 0 7093 2759 2766 N 52 4913 * 3431 3566 6264 2741 * 4438 3014 4295 * 2638 3928 4559 4835 4288 5259 5309 * * 52 31 7014 6205 2000 415 1075 929 7072 1000 3771 K 53 * * 4098 2963 5404 2769 5537 4491 3200 4813 * 3718 4116 4027 4262 3874 4111 5974 6151 5089 53 122 5389 4131 3024 189 * 0 6932 1515 3066 L 54 4880 * 5796 3490 4932 3097 6251 5457 3335 5962 * 2734 4687 6552 5600 4128 3068 2891 6771 5835 54 93 4969 5032 1499 630 2154 367 6852 2045 4128 L 55 4605 * 5889 2605 4694 5056 4017 5109 2827 3310 5720 6549 5527 4385 * 3616 3648 3712 6168 5274 55 86 4869 5402 1846 470 1451 657 6856 2032 4160 N 56 4293 6414 3635 3055 4515 4808 6627 4586 3362 4908 5756 3985 4561 3621 4463 4687 3427 3437 * * 56 57 5792 5595 2352 315 1256 783 6894 1629 3853 K 57 4752 * 6756 5672 * 4891 5658 3993 2971 3667 5689 4248 4792 5815 1920 4303 4442 3153 6348 * 57 92 6318 4348 1585 585 1688 536 6946 1000 3481 F 58 4199 * 4800 4202 4294 4255 5520 6505 2672 4634 4732 3981 4961 3629 4669 3367 4348 4866 * 3500 58 34 * 5439 * * 2211 351 6924 0 3834 N 59 6076 5046 * 6663 3820 5347 4857 2710 5304 1543 6628 4517 * * 5008 5233 * 3688 * 3257 59 48 6525 5515 2585 263 1722 521 6858 1000 3927 S 60 * * 3147 4559 * 1021 * * 4124 * * 4813 3904 5292 4788 3058 * 6580 * * 60 30 5587 * 973 1027 2134 373 6864 1718 3847 D 61 6560 * 3588 3088 6586 * 5458 5037 4451 2467 4400 3711 6159 5411 3047 4353 3122 4618 * 6428 61 11 6990 * 2322 322 432 1949 6877 1000 3532 V 62 3947 3681 * 6783 5093 * * 2788 * 2435 4002 * * * * 6360 4636 1629 * 4295 62 17 * 6407 * * 1119 890 6962 0 1550 F 63 6202 * * * 1522 * * 3221 * 2531 3479 * * * * 5111 5423 2664 * 4104 63 0 * * * * 0 * 6953 0 1755 L 64 * 5919 * * 6240 * * 1014 * 2254 6376 * * * * * * 1981 * * 64 0 * * * * * * 6979 0 0 R 65 6215 * * * * * 6555 * 3974 * 5946 5613 3908 * 371 5515 6152 * * * 65 0 * * * * * * 6946 0 0 G 66 5788 4807 * * * 105 * * * * * * * * * 5959 * * * * 66 0 * * * * * * 6945 0 0 T 67 6334 6301 2425 2610 * * 5470 5156 5930 * * 2140 * 6350 4197 2420 3692 * * * 67 21 6131 * 1000 1000 * * 6937 1000 0 Q 68 4441 * 6458 4858 6690 5086 3560 * 4761 5794 5685 1768 * 3149 6013 2439 4112 6799 * 4762 68 14 6648 * 3700 115 * * 6937 1000 0 V 69 * * * * 6146 6196 * 1009 * 5805 * * * * * * * 1128 * * 69 29 5638 * 1000 1000 * * 6890 1538 0 M 70 4758 * 5014 5475 * * * 2873 3887 2268 4599 * * * 2670 4521 5071 2145 * * 70 0 * * * * * * 6805 0 0 Y 71 6759 * * 5412 2546 * 4604 6551 5029 2937 4621 6127 * * * 3268 3683 4046 * 1807 71 0 * * * * * * 6655 0 0 I 72 * * * * 5144 * * 795 * 3468 5583 * * * * * 6316 1881 * * 72 25 5890 * 2000 415 * * 6595 1000 0 S 73 3324 * * 4333 * 3165 5311 * 5642 5950 * 4634 * 5769 3540 1294 2998 * * * 73 0 * * * * * * 6126 0 0 E 74 2436 * 3399 1707 * * * * * 3673 * * 4754 4581 * * 2713 3259 * * 74 0 * * * * * * 5503 0 0 Q 75 4569 * 4207 2909 * * * * * 4256 4720 * * 2390 * * 4470 1341 * 4337 75 0 * * * * * * 5163 0 0 K 76 * * 2356 2520 * * * * 857 * * * * 3677 * * * * * * 76 0 * * * * * * 4563 0 0 I 77 * * * * * * * 879 * 1682 * * * * * * * 2791 * * 77 0 * * 0 * * * 3275 0 0 //