HHsearch 1.5 NAME c4c0gB_ FAM FILE c4c0gB_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4c0gB_.a3m DATE Sat Oct 12 08:28:14 2013 LENG 97 match states, 97 columns in multiple alignment FILT 102 out of 142 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.3 EVD 0.4713 1.6709 SEQ >ss_dssp CCTTSHHHHTTSCHHHHHHHHHHSTTSHHHHHHHHHHHHTTCEEETTTTEEEEESSCCSEECSSEEEEEEEEEETTTTEEEEEEEEEEEGGGBSSCC >sa_dssp EEDCDCECBEEDDCDDAADBBBEEEEDDBCEBABDAADEDEADCACEDDCAACDDEEBEDEDEECBCBCACBBBDDECCDEDDEDBDBCBECBECEE >ss_pred CCCCCHHHHHHCCCCCEEEHHHHCCCHHHHHHHHHHHHHCCCEEECCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCEEEECCCCEECHHHHCCCC >ss_conf 9765479997228001111223189979999999999854978814211468874887746786035779997076554858268789347842389 >Consensus xxxxsxxxfxkfxxeTLFyiFYxxpxxxxQxxAAxELxxRxWryhkxxxxWfxrxxxpxxxxxxxExgxyxyFDxxxWxxxxkxxFxxxyxxLexxx >c4c0gB_ AHSDTVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYXXWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRD >UniRef50_A8IMK5(580-667:721) Predicted protein n=1 Tax=Chlamydomonas reinhardtii RepID=A8IMK5_CHLRE E=3e-07 s/c=0.64 id=31% cov=91% -------YLSKFKEETLFYMFYSMPGDEAQLLAADELSVRGWWFHRRYKLWMLHAPGAATQKSQRgERGSFLIFDINQWEIVQKADLEILYEDIE--- >UniRef50_Q5KKD7(300-395:444) Putative uncharacterized protein n=1 Tax=Filobasidiella neoformans RepID=Q5KKD7_CRYNE E=3e-15 s/c=0.86 id=29% cov=89% ---------QNFAEDTLFLAFYMSPQDVLQLRVAEELYARGWRYHTELQTWLTsptlasidlSKADRSSGQPNWIRGPFAYLDTRTWvRQRTAEDFTIDA NVLE--- >UniRef50_Q24DA4(141-218:243) NOT2 / NOT3 / NOT5 family protein n=1 Tax=Tetrahymena thermophila SB210 RepID=Q24DA4_TETTH E=1e-12 s/c=0.95 id=22% cov=79% ----NPTLIKKLPEDTLFYIFYNYPDETQQFAAVQVLYEKGWKYNHNMLTWIKEIEEV-----GKNLYKFSFFNFKEWKTLKADN------------ >UniRef50_C6LN16(120-188:211) Putative uncharacterized protein n=1 Tax=Giardia intestinalis ATCC 50581 RepID=C6LN16_GIALA E=1e-10 s/c=0.98 id=26% cov=72% --SDSLDTIYTLDEDTLFLIWIVMPGTQLQEIAGAALERLGWYYDVDSSVWYLCDVQNKV----------LYYDTATMSRK---------------- >UniRef50_B7XJ77(67-141:161) Glucose-6-phosphate 1-dehydrogenase n=1 Tax=Enterocytozoon bieneusi H348 RepID=B7XJ77_ENTBH E=5e-11 s/c=0.92 id=30% cov=78% -----------FNDETLFYIFYAMNETEMQIQAFNELIQRKYLYSTKLEEFFVK---PSFIADNLNVQTLTVFNPYKW---EKENIEIVFDD----- >UniRef50_Q8SSK2(76-148:161) GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION n=1 Tax=Encephalitozoon cuniculi RepID=Q8SSK2_ENCCU E=6e-10 s/c=0.89 id=24% cov=76% --------MDNLHEETLFYIFYSFPNDRLQIKAYDNILKKKYVFCKMYKCFVTFN---SPATADHVKRSIVMFDPFSWSKVSLE------------- >UniRef50_C4R9C7(440-531:537) Subunit of the CCR4-NOT complex n=1 Tax=Pichia pastoris GS115 RepID=C4R9C7_PICPG E=3e-18 s/c=1.01 id=29% cov=95% --ADLHSLVQRVDTATLFYAFYFASTPYERVVSKNVLVNlRHWKLHHNQKLWFQRFGQPKSVGEGFEIADFKVFDAASWSLKEMLNYKFEYSFL---- >UniRef50_A2FBH3(101-185:193) Putative uncharacterized protein n=1 Tax=Trichomonas vaginalis RepID=A2FBH3_TRIVA E=2e-13 s/c=0.91 id=29% cov=87% -----PEMFQYYDIYILFYIFYYFPNSPYQYFAAKELKSRGWTFLNESQQWVHLISHVYETTDKDIIGKFEIFDrsPDVWDVVVRNSYSI--------- >UniRef50_A5DSP0(529-643:647) Putative uncharacterized protein n=1 Tax=Lodderomyces elongisporus RepID=A5DSP0_LODEL E=5e-13 s/c=0.66 id=29% cov=81% ---NSVHYMQKFDDDLLFCCFYYgedgCMDNFAKWNAAKELTKRGWVFNEELSQWCLKstgkttgkigrsrsssiaptalaggnsasDQSLTENNGGGEK EMYtKYFDEKTWLIR---------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 H 2 * * * * * * 0 * * * * * * * * * * * * * 2 0 * * * * * * 1510 0 0 S 3 1807 * * * * * * * * * * * * * * 486 * * * * 3 0 * * * * * * 2370 0 0 D 4 * * 846 4907 * * * * * * * 1617 * * 3568 * * * * * 4 0 * * * * * * 3627 0 0 T 5 * * 4771 * * * * * * 4115 * 2739 * * * 734 3107 4701 * * 5 0 * * * * * * 4122 0 0 V 6 4282 * * 4612 * * 4685 * 5119 2280 * * 1231 * 5787 3522 5431 3648 * * 6 0 * * * * * * 4569 0 0 E 7 3744 * 2949 1638 * * 3272 * 3729 5318 * 4771 * 4274 5263 3022 4914 * * * 7 0 * * * * * * 4681 0 0 F 8 * * * * 2934 * * 2184 5143 2340 3210 4676 5854 * * * 4635 3153 * 3236 8 0 * * * * * * 4957 0 0 Y 9 * * * * 959 * * 3715 * 3675 2508 * * * * * 6705 4335 * 3377 9 0 * * * * * * 5364 0 0 Q 10 4673 * 4183 2950 * 7105 4719 * 2831 5102 6296 6271 * 2282 3083 2684 5126 * * 5164 10 22 7226 6932 1000 1000 * * 5579 1000 0 R 11 * * * 5456 * 5522 5091 * 1299 4808 * 3475 * 3103 2849 4316 4130 5940 * 6045 11 0 * * * * 0 * 5611 0 1000 L 12 7211 * * * 1158 * * 5438 * 1681 3899 * * * * * * 4843 * 3206 12 13 6777 * 0 * * * 5645 1000 0 S 13 4792 * 1869 2947 * 5877 4018 * 4584 6493 * 3333 4449 3467 6718 2805 4617 * * * 13 0 * * * * * * 5645 0 0 T 14 5169 * 2610 2031 6591 * * 5714 * 2342 5828 4406 4888 6085 * 6233 2751 4223 * 6918 14 0 * * * * * * 5645 0 0 E 15 5821 * 1540 1098 3759 * 6074 * * 5877 6051 * * 6771 * 5215 * * * 6124 15 0 * * * * * * 5645 0 0 T 16 4563 6749 * 6945 5352 * * 4821 * 3783 * * * 7019 * 5202 392 6496 * * 16 0 * * * * * * 5641 0 0 L 17 * * * * * * * * * 30 * 5616 * * * * * * * * 17 0 * * * * * * 5659 0 0 F 18 * * * * 175 * * * * 3867 4453 * * * * * * * * * 18 0 * * * * * * 5659 0 0 F 19 * 6178 * * 1429 * * * * 4574 * * * * * 6457 * * 5541 889 19 0 * * * * * * 5659 0 0 I 20 4205 3618 * * 4762 * 5161 895 * 3672 3653 5935 * * * * 6404 3725 * * 20 0 * * * * * * 5659 0 0 F 21 * * * * 139 * * * * * * * * * * * * * 5285 3913 21 0 * * * * * * 5659 0 0 Y 22 * * * * 5065 * 5901 5285 * * * * * * * * * * * 108 22 0 * * * * * * 5659 0 0 Y 23 4868 5432 * * 3215 * 5161 * 6769 * 5430 3026 * 6457 * 2423 3194 3991 * 1827 23 36 5332 * 3075 182 * * 5659 1499 0 L 24 4113 3651 * * 3510 5611 3686 * 6438 3473 2300 5254 6222 3251 5204 3687 7332 5103 * 3519 24 11 7012 * 3807 107 * * 5659 1000 0 E 25 5516 6786 6707 5009 * 6866 * 4172 5096 6222 4870 5205 936 3171 * 4571 5379 4410 * 6207 25 0 * * * * * * 5659 0 0 G 26 * * 4439 5085 * 1294 6728 * 3407 * * 3539 * 4347 2602 6072 3351 * * * 26 37 5293 * 1000 1000 * * 5659 1463 0 T 27 * * 1352 3244 * * * * * 7199 * 5071 3168 * 6521 3512 1964 * * * 27 16 6509 * 1000 1000 * * 5659 1000 0 K 28 4800 * 5779 2924 4352 * * 3468 4517 2802 4509 * 6292 4282 5662 4268 4418 3326 * 2631 28 0 * * * * * * 5659 0 0 A 29 3133 * 6507 3198 * * 7527 4528 4847 1973 3034 6791 * 2235 * 4875 * 6728 6957 4932 29 0 * * * * * * 5659 0 0 Q 30 * * * * * * 5294 * 3727 * * * * 206 4951 * * * * * 30 0 * * * * * * 5659 0 0 Y 31 4360 * 5356 2917 4021 5843 6139 3655 5359 2012 4232 6843 * 5276 6102 * 5253 4833 4369 2862 31 16 * 6521 * * * * 5659 0 0 L 32 3652 5827 6734 6542 3672 * 6951 2949 5070 1879 4463 3582 * 4871 5933 * * 3953 * 3046 32 0 * * * * 0 * 5647 0 1000 A 33 228 6102 * * * * * * * * * * * * * 3977 5162 4627 * * 33 0 * * * * * * 5659 0 0 A 34 425 * * * 5007 4079 * 6798 5966 * * * * * * 4555 7078 4953 * 4117 34 0 * * * * * * 5659 0 0 K 35 2874 5631 4329 4107 * 6595 5837 4615 2258 4695 5901 3747 * 3199 2810 5301 5271 5939 * 6791 35 0 * * * * * * 5659 0 0 A 36 3706 * * 526 * 6791 * 5065 * 4633 6390 4638 * 5137 6553 * 7549 4543 * 6572 36 0 * * * * * * 5659 0 0 L 37 * * * * * * * 4235 * 79 * * * * * * * * * * 37 14 6659 * 0 * * * 5659 1000 0 K 38 4311 4520 * 5285 * 5610 3994 3548 2189 4814 5692 5935 * 5356 5036 4095 4364 4491 7004 2273 38 10 * 7147 * * * * 5659 0 0 K 39 3264 * 5193 2826 * 5358 6508 5192 2538 6679 * 2889 * 3949 2626 3553 6328 6015 * 6955 39 23 5964 * 0 * 0 * 5662 1000 1000 Q 40 7148 * * * 6553 * * * 3048 4830 6582 6239 * 3879 498 6404 * * * 6073 40 0 * * * * * * 5659 0 0 S 41 6553 * 3976 3483 * 1246 5966 * 3064 6843 * 2973 * 6239 * 2946 * * * * 41 0 * * * * * * 5659 0 0 W 42 * * * * 4045 * * * * * * * * * * * * * 180 4147 42 0 * * * * * * 5659 0 0 R 43 * 6923 * * 5692 6102 * 4621 2614 4066 * * * 5434 1052 * 4565 3341 5493 5285 43 0 * * * * * * 5659 0 0 F 44 * * * * 1447 * * * * 5089 * * * * * * * 4138 4984 956 44 0 * * * * * * 5659 0 0 H 45 * 5662 3978 * * * 709 * * 4618 * 2968 * 5901 * 3197 * * * 6558 45 0 * * * * * * 5659 0 0 T 46 6071 * 5933 5066 * 6863 4685 4486 967 6553 5826 4664 6558 * 4545 4634 2910 4614 * * 46 13 * 6791 * * * * 5659 0 0 K 47 5623 6375 3494 2075 5242 5314 6755 5979 2041 * 5645 3985 7214 4530 4428 5656 4784 4422 * 4658 47 0 * * * * * 0 5651 0 1000 Y 48 6375 5920 5561 3106 5758 3669 4892 7180 5151 2108 5626 5020 * 4866 6023 4337 4294 * 7189 2131 48 0 * * * * * 0 5651 0 1000 X 49 5588 5926 5270 4341 5912 4383 5266 * 2153 4162 5517 4347 * 2319 2954 4339 4321 * 5926 * 49 0 * * * * * 0 5658 0 1000 X 50 3857 3818 * 5175 6461 * 6366 4435 4190 2565 4666 6326 * 2867 6646 6383 2147 3448 * 6558 50 0 * * * * * 0 5658 0 1000 W 51 * * * * 4280 * * * * * * * * * * * * * 101 5927 51 31 * 5577 * * 0 * 5651 0 1000 F 52 * 6126 5903 * 1041 * 6494 4026 * 2539 3901 * * * * * * 3278 * 3867 52 57 4682 * 3152 172 * 0 5623 1938 1376 Q 53 5705 * * 6475 5131 * 4846 4654 2747 2646 5236 5134 * 2956 3773 4570 2382 5826 6638 4672 53 56 5913 5559 3170 170 1092 914 5621 1000 1376 R 54 6469 5269 * 6210 4780 * 5275 * 2026 4713 6357 * 3585 5819 1132 5892 * 5877 * * 54 108 4190 5835 3259 159 * 0 5606 2641 1476 H 55 3502 * 2562 3598 5264 6813 3840 3806 4853 4021 6509 3121 * 3309 4832 5111 6592 3854 * 5878 55 75 5126 5485 327 2301 * 0 5574 1681 1848 E 56 4843 * 4096 2691 * 2331 6949 6553 4398 * * 4629 2947 3546 * 3258 4076 3893 * * 56 184 3211 6387 1303 750 1953 431 5526 2880 2320 E 57 3769 * 2876 1747 * 4534 4180 5649 4888 4853 6252 3532 5505 3248 6447 4397 5643 * * * 57 144 4745 4115 1230 801 2007 413 5556 1831 2290 P 58 4411 * * 4794 * 4778 * 6951 3744 4736 5965 3663 1135 5797 5843 5135 5831 3263 * 5354 58 52 * 4817 * * 1743 512 5517 0 3161 K 59 4804 * 4484 * * 6587 * 4987 1878 3540 * 3722 4301 3844 4758 2929 3699 4183 * 5429 59 85 4638 5869 1000 1000 * 0 5498 1975 3212 T 60 5526 * * 3122 3210 5920 * 4821 5353 4221 5424 4208 3904 3605 5054 3838 3963 2456 * 4249 60 87 * 4088 * * * 0 5491 0 3371 I 61 4546 * 4624 6746 5642 4897 * 2275 3055 3818 6686 5402 4289 3857 6986 3259 3125 3730 * * 61 35 5373 * 1177 842 3483 135 5405 1536 3763 T 62 4121 6644 5698 6366 * 3882 * 6471 6608 6270 * 1811 * 5012 * 3449 1524 5642 * 5407 62 59 4641 * 432 1950 3369 147 5425 1758 3727 D 63 3761 * 2308 1956 * 3676 6273 * 4841 5123 * 4679 2992 5122 * 3664 5952 5416 * * 63 31 5541 * 1635 560 2936 202 5441 1686 3615 E 64 4385 * 3602 3161 * 3020 6393 4650 3104 5055 * 3329 * 3571 5056 3876 3295 4886 * 5713 64 57 5574 5812 1350 718 * 0 5467 1426 3515 F 65 5692 3906 4336 4858 2766 3575 4667 * 4271 4602 6693 5743 * 4661 6589 2830 5945 4819 5640 2505 65 70 4895 6189 0 * 2404 302 5466 1749 3626 E 66 * * 6318 575 * 5612 * 3845 4536 * * 4910 * 4019 * 5175 6184 5323 * 5524 66 0 * * * * 2889 209 5479 0 3471 Q 67 4940 4648 * 4773 6301 6765 * 3955 2726 4945 * 6214 * 2682 2195 3917 6207 2818 * 6429 67 64 5331 5762 1018 982 2678 245 5490 1642 3345 G 68 3081 * * 4327 * 556 * * * * * 6220 * 5562 4720 4658 6366 6208 * 6142 68 62 5597 5531 3170 170 2535 273 5462 1000 3359 T 69 5460 5349 2977 3422 * 5132 6299 * 3864 5004 5873 4409 4498 5631 * 2131 2684 4810 6335 5015 69 40 5204 * 3590 125 1781 496 5421 1767 3393 Y 70 * 5992 * * 1890 * * 5279 * 5542 * * * * * * * 6333 3196 874 70 23 5984 * 0 * 583 1588 5457 1000 2958 I 71 5901 5388 5473 4655 4420 * 6457 3160 2308 3218 5883 3904 * 5414 4435 6349 4356 3024 6039 3940 71 0 * * * * 601 1553 5601 0 1834 Y 72 * 4953 * 6621 2530 * * 2994 * 6024 4809 * * * * 5373 * 3004 6711 1154 72 0 * * * * 0 * 5627 0 1000 F 73 * * * * 142 * * * * 5132 * * * * * * * * 4675 5276 73 0 * * * * * * 5644 0 0 D 74 * * 451 4775 * * * * 4097 * * 2830 * 6370 * 5576 * * * * 74 37 5302 * 2704 240 * * 5644 1692 0 Y 75 4256 6570 * 6142 3834 * 5557 3787 * 4548 4531 5453 2002 4798 * 5692 3148 4824 6213 2444 75 105 3830 * 882 1129 * * 5644 2513 0 E 76 3963 * 3165 1968 4490 7315 6243 6201 4207 5796 5050 2597 5576 4612 5921 4632 5114 4374 6456 5934 76 152 3318 * 826 1198 * * 5644 2688 0 K 77 5974 * 4010 4451 * 4713 4580 4715 2592 6715 * 2851 * 4705 5759 2724 2166 6226 * * 77 137 3616 6765 0 * * * 5644 2630 0 W 78 * * * * 6471 * * * * * 5272 * * * * 5016 * * 102 * 78 59 5882 5449 0 * 0 * 5643 1000 1000 G 79 5637 3145 4192 3468 * 6190 6252 6035 2827 3800 6455 4409 * 5442 4164 2484 3227 6299 5510 6724 79 0 * * * * 913 1093 5614 0 1567 Q 80 5079 * * * 5449 * 6568 2252 2330 3875 5332 4808 5675 2817 3668 7491 3788 3799 * 6713 80 0 * * * * * 0 5608 0 1000 R 81 5033 6738 6492 3487 * * 6632 3005 2845 4302 4306 * * 5434 1960 * 6217 2388 * * 81 0 * * * * 0 * 5605 0 1000 K 82 4849 6825 4449 2883 * * * 4187 3246 5070 * 4821 3752 4683 1901 3140 5156 5197 * * 82 0 * * * * * * 5513 0 0 K 83 4373 * * 5549 * * * 5360 872 5470 5758 6136 6010 * 2112 * 6245 6260 * 4990 83 122 * 3625 * * * * 5396 0 0 E 84 4554 5142 3035 1591 5886 6725 5028 4885 5482 3908 5615 3575 * 5335 * 2979 5591 5735 * * 84 210 6150 3041 1000 1000 0 * 5316 1000 2427 G 85 6502 * 1362 6026 * 4818 4188 * * * 6163 1438 6141 5034 * 4750 6027 * * 6149 85 0 * * * * 0 * 5294 0 2663 F 86 * 6533 * * 460 * 6237 5079 * 4819 5258 6012 * * * * * 6454 * 2931 86 0 * * * * * * 5233 0 0 T 87 6248 * 4179 3386 * * 5592 4577 2887 4183 * 5015 * 3701 4048 4290 2109 3250 * 5223 87 0 * * * * * * 5188 0 0 F 88 * * * * 1297 * * 2435 * 1398 * * * * * 5995 * 6271 * * 88 0 * * * * * * 5182 0 0 E 89 6890 * 1896 2035 3965 * 6670 6931 4631 3889 5744 4925 6311 4592 3639 6390 6945 4261 * 5017 89 0 * * * * * * 5138 0 0 Y 90 4528 6525 6200 * 3178 * 5333 5765 4344 * * 4726 4106 * * 4969 * * * 733 90 0 * * * * * * 5073 0 0 R 91 3924 4992 2237 3032 * * 5213 5242 3549 * 6200 3146 * 3951 4832 2558 5682 6180 * * 91 0 * * * * * * 5073 0 0 Y 92 5388 5814 2255 4535 3603 * 3650 3778 3492 4336 4714 * * 3923 * 5587 * 5194 5094 2727 92 0 * * * * * * 5059 0 0 L 93 * * * * 4660 * * 3549 * 287 4179 * * * * * * * * * 93 0 * * * * * * 4989 0 0 E 94 4143 * 2864 457 * * * * 4855 * * * * * 5185 5987 * * * * 94 0 * * * * * * 4717 0 0 D 95 3736 * 1529 2901 * * 5337 * 3239 * * 2450 * 3517 * * 4519 * * * 95 0 * * * * * * 4377 0 0 R 96 * * 4598 4615 * * * * 2049 * * 2811 * 3963 1090 * * * * * 96 0 * * * * * * 3525 0 0 D 97 * * 496 1781 * * * * * * * * * * * * * * * * 97 0 * * 0 * * * 1999 0 0 //