HHsearch 1.5 NAME c4bpo9_ FAM FILE c4bpo9_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4bpo9_.a3m DATE Sat Jul 20 08:34:01 2013 LENG 93 match states, 93 columns in multiple alignment FILT 35 out of 39 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.5 EVD 0.4082 -0.4187 SEQ >ss_dssp CCCCCCCCCCSCCCCCCCCCCCTTGGGGGEEECTTCCEEECSCBCTTTTTTCBCEECSSEEECTTTCCEEECCHHHHHHHHHHHHHHHHHHHC >sa_dssp EEEEEEEEEEEEEEEEEEEEEEEECEEECDDEDEEEEEDEECDDAEECDEECCBCDDDCDBDAEEDECEDEEDEDDBEEDDDDDDEEDEEEEE >ss_pred CCCHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEEHHHHCCCCCCCEEEECCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCC >ss_conf 950121001477646553222034555568987998585412208764784585046443324551149998006678649999865453049 >Consensus xkkrkkkxytTpKkxkHxxKkvKLavLkyYKVdxnGKvxrlrxxCpxCgxGvFMAxHxDRxyCGKCxlTxxxxxxxxkxnxxxxxxxxxxxxx >c4bpo9_ KKKKKKKSYTTKKKTKHRHVHTKLGALAFYKLENNGKVSLQQKGCPKCGPGIFMAKHYDRHYCGKCHLTLKIDAETAKKNLEELKKKQDAKKS >UniRef50_B0E930(87-132:139) 40S ribosomal protein S31, putative n=2 Tax=Entamoeba RepID=B0E930_ENTDI E=4e-09 s/c=1.36 id=44% cov=48% -----------------------LACLTHYNVTSAGKVERLRKCCANkkCGVACFLAQHKDRLTCGKCH-------------------------- >UniRef50_UPI0000DC1016(77-145:145) UPI0000DC1016 related cluster n=1 Tax=Rattus norvegicus RepID=UPI0000DC1016 E=5e-15 s/c=1.19 id=47% cov=62% -RKRKMKSYTTPKKNKHE--KVKLAVLKYYEVDKNGKIKNVLLM------NVVMGSHFDRHYYGKC--------------------------- >UniRef50_A8BNY1(83-136:137) Putative uncharacterized protein n=2 Tax=Giardia intestinalis RepID=A8BNY1_GIALA E=3e-13 s/c=1.41 id=37% cov=55% ---------------KHEPKKVRLACLKYYTIKGD-TAEPTREYCPNCGPGIRIARHADRCHCGRC--------------------------- >UniRef50_A2FZV8(62-134:134) Ribosomal protein S27a, putative n=5 Tax=Trichomonas vaginalis RepID=A2FZV8_TRIVA E=5e-10 s/c=0.90 id=40% cov=77% --------FVSKKRVPHQRKKEKLKILKLFKIGKDGSVEAQRKECPHCK-GCFLAKHKDgRQYCGNCHYTVDKEGKQIKSN------------- >UniRef50_Q6A1P6(91-154:177) Putative uncharacterized protein n=1 Tax=Euplotes vannus RepID=Q6A1P6_EUPVA E=1e-11 s/c=1.11 id=33% cov=53% ----------------HKHENIKMRVLSYFEVDKNGKIEKLKQESPE-QAGCYLADHKDRMHCGK---------------------------- >UniRef50_Q3LWK0(24-87:91) Ribosomal protein S27a n=1 Tax=Bigelowiella natans RepID=Q3LWK0_BIGNA E=3e-11 s/c=1.08 id=30% cov=61% ----------TPKKISHIRKKVKCSILNIIKINSNGLQVNEICRNKSCFYSCFLANHSNRNSCGRC--------------------------- >UniRef50_A2SR71(2-56:60) 30S ribosomal protein S27ae n=4 Tax=Euryarchaeota RepID=RS27A_METLZ E=4e-08 s/c=1.08 id=41% cov=55% -----------KKVVKATPKRSEL-----YTVDAQGKATTSHRACPRCGAGVFMGEHKDRFSCGKC--------------------------- >UniRef50_O26368(10-51:51) 30S ribosomal protein S27ae n=13 Tax=Archaea RepID=RS27A_METTH E=0.0005 s/c=1.08 id=44% cov=39% ----------------------------------DGKLVRKNPFCVRCSNGVFMADHGDRYACGKCGYT------------------------ >UniRef50_Q173F2(57-132:132) Putative uncharacterized protein (Fragment) n=5 Tax=Coelomata RepID=Q173F2_AEDAE E=2e-10 s/c=0.88 id=38% cov=78% -KKRKKNNYSTPTSSTggRRPNLPSSSS----KVDEHGKI-HLRRECTseSCCAGVVMATHEDRHYCSKCHLTLIYSKQEEK--------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 0 * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 K 2 * * * * * * * * 237 * * * * * 2721 * * * * * 2 0 * * * * * * 1834 0 0 K 3 * * * * * * * * 0 * * * * * * * * * * * 3 0 * * * * * * 1951 0 0 K 4 * * * * * * * * 1737 * * * * * 515 * * * * * 4 0 * * * * * * 1951 0 0 K 5 * * * * * * * * 211 * * * * * 2875 * * * * * 5 0 * * * * * * 1951 0 0 K 6 * * * * * * * * 194 * 2989 * * * * * * * * * 6 0 * * * * * * 1951 0 0 K 7 * * * * * * * * 269 * * 2557 * * * * * * * * 7 0 * * * * * * 1951 0 0 S 8 2852 * * * * * * * * * * 2044 * * * 1224 * 2390 * * 8 0 * * * * * * 2236 0 0 Y 9 * * * * 2895 * * * * * * * * * * * * * * 208 9 0 * * * * * * 2338 0 0 T 10 3441 * * * * * * * * * * * * * * 2374 784 2895 * * 10 0 * * * * * * 2338 0 0 T 11 3599 * * * * * * * * * * * * * * 3157 312 * * * 11 0 * * * * * * 2589 0 0 K 12 * * * * * * 3678 * 1869 * * * 626 * * * * * * * 12 0 * * * * * * 2731 0 0 K 13 * * * * * * * * 158 * * * * * * * 3268 * * * 13 0 * * * * * * 2731 0 0 K 14 * * * * * * * * 485 * * * * * 3412 3268 * 3507 * * 14 0 * * * * * * 2731 0 0 T 15 * * * * * 3763 * 1874 * * * 2784 * * * 2458 3443 2093 * * 15 0 * * * * * * 2731 0 0 K 16 * * * * * * * * 516 * * * 3623 * * 3062 3327 * * * 16 151 3327 * 1000 1000 * * 2861 1000 0 H 17 3872 * * * * * 281 * * * * * * * 3201 * * * * * 17 0 * * * * * * 3027 0 0 R 18 * * * 2420 * * * 3199 1798 * * * * 4392 1984 * 3105 * * * 18 80 * 4220 * * * * 3027 0 0 H 19 * * * * * * 1730 * 2939 * * * 1926 * 1712 * * * * * 19 0 * * * * * 0 3001 0 1000 V 20 * * * 3765 * * * * 489 * * 3713 * * 3976 * * 3751 * * 20 0 * * * * 0 * 3001 0 1000 H 21 * * * * * * 3789 * 583 3024 * 3859 * * 3872 * * * * * 21 0 * * * * * * 3027 0 0 T 22 * * * 2286 * * * 3859 * * * * 3783 * * 3872 3789 964 * * 22 0 * * * * * * 3027 0 0 K 23 * * * 2972 * * * * 462 * * * * * 3755 3783 * * * * 23 0 * * * * * * 3027 0 0 L 24 * 3273 * * * * * * * 499 2884 * * * * 4219 * * * * 24 69 * 4415 * * * * 3112 0 0 G 25 966 * * * * 3183 * * 3546 * * * * * 2864 2690 * * * * 25 0 * * * * * 0 3130 0 1000 A 26 3502 3125 * * * * * 2833 * 4588 * * * * * 4226 5368 896 * * 26 79 * 4226 * * * 0 3172 0 1000 L 27 * * * * * * 4290 * * 152 * * * * * * * * * 4349 27 0 * * * * * 0 3149 0 1492 A 28 3396 * * * * * * * 1098 * * 3007 * 5163 2976 3189 4356 * * * 28 0 * * * * * 0 3142 0 1492 F 29 * * * * 2202 * 2813 3474 * 3774 * * * * * * * * * 1067 29 0 * * * * 1000 1000 3150 0 1492 Y 30 * * * * 2395 * 4191 3514 * * * * * * * * * * * 583 30 0 * * * * 0 * 3180 0 1000 K 31 * * * 3175 * * 4744 * 624 * * 4492 * * 4812 5056 3423 * * * 31 0 * * * * * * 3209 0 0 L 32 * * * * * * * 1710 * 3705 * * * * * * * 695 * * 32 64 * 4518 * * * * 3209 0 0 E 33 * * 837 3794 * 3222 * * 3476 * * 3481 * * * * 3618 * * * 33 46 * 4980 * * 0 * 3173 0 1000 N 34 3997 * 3770 1891 * 2298 * * 2687 * * 4640 * 4591 * 2696 * * * * 34 54 4757 * 0 * 0 * 3296 1000 1000 N 35 4626 * 1545 5471 * 5116 4556 * * * 4876 1213 * 4766 * 5607 * * * * 35 328 * 2298 * * * * 3318 0 0 G 36 * * 3657 * * 119 * * * * * * * * * * * * * * 36 49 4914 * 2000 415 0 * 3100 1000 2187 K 37 * * * * * * * * 340 3805 * * * * * 3593 4175 * * * 37 0 * * * * * * 3223 0 0 V 38 3450 * * * * * * 1669 * 4797 * * * 3805 * * 4964 1138 * * 38 69 * 4424 * * * * 3223 0 0 S 39 * * * 2026 4779 * 4568 4207 3551 * * * * 5525 * 2887 2622 2203 * * 39 0 * * * * 0 * 3186 0 1000 L 40 4968 * * * * * 4424 * 3086 4972 * 3064 3582 * 909 * 4790 * * * 40 0 * * * * * * 3223 0 0 Q 41 * * * 3792 * * * 3906 3338 1162 * * * 3512 4345 4841 3274 4633 * * 41 0 * * * * * * 3174 0 0 Q 42 * 4345 * * * 5418 4841 3792 2729 3323 * 4162 * 5133 1043 * * * * * 42 0 * * * * * * 3174 0 0 K 43 * 3845 5308 3531 * * 4982 * 1584 3950 * * 4839 4262 1990 * * * 4319 * 43 0 * * * * * * 3144 0 0 G 44 4215 5077 4004 1381 3769 4667 * 4982 * * 3950 * * 4252 3845 5447 5138 4881 * 4214 44 60 * 4609 * * * * 3144 0 0 C 45 * 369 * * * * * * * * * 3959 * * 4075 3291 * * * * 45 136 3478 * 1000 1000 * 0 3090 1713 1000 P 46 4802 * 4977 5277 * * * * 3959 * * * 705 * * 3075 3663 4998 * * 46 294 2441 * 1000 1000 * 0 3090 1742 1000 K 47 * * 4695 2824 * * 5231 * 4000 * * 2013 * 3797 1965 2853 5895 * * * 47 369 3015 3291 1000 1000 * 0 3090 1830 1000 C 48 * 0 * * * * * * * * * * * * * * * * * * 48 0 * * * * 394 2065 3008 0 1813 G 49 4977 3428 * * 3959 747 * * 3615 * * * * 5072 * 3270 * * * * 49 78 * 4254 * * * 0 3090 0 1000 P 50 1623 * 3505 5590 * 5475 * * 3862 * * 4283 2102 * 4950 * * 3448 * 3900 50 50 4868 * 0 * 0 * 3074 1000 1569 G 51 4944 * * * * 253 * * * * * 4564 * * * 3534 * * * * 51 121 * 3633 * * * * 3138 0 0 I 52 5333 2075 * * 4935 * * 3541 * * * * * * * 4861 2877 1156 * * 52 0 * * * * 869 1144 3093 0 1482 F 53 * * * * 443 * * * * 4089 * * * * 4338 * * 3572 * 3799 53 0 * * * * * 0 3069 0 1000 M 54 * * * * * * * 4338 * 1902 550 * * * * * * * * * 54 0 * * * * 0 * 3069 0 1000 A 55 259 * * * * 2987 * * * * * * * * * 4715 * * * * 55 0 * * * * * * 3138 0 0 K 56 5071 * 3563 2497 * 4149 * * 3288 * * 2743 * 3332 4383 2484 4773 4725 * * 56 0 * * * * * * 3138 0 0 H 57 * * * * * * 56 * * * 4725 * * * * * * * * * 57 0 * * * * * * 3138 0 0 Y 58 3435 * * 3456 2183 4181 5281 * 1833 3570 * 5071 * * * 3387 * * * 5318 58 0 * * * * * * 3138 0 0 D 59 * * 307 * * * * * * * * 2383 * * * * * * * * 59 78 4239 * 0 * * * 3138 1118 0 R 60 * * * * * * * * * * 4145 * * * 84 * * * * * 60 0 * * * * * * 3118 0 0 H 61 * 4359 4812 6055 5172 * 1705 4732 5723 2874 4415 3309 * 4239 4372 * 5038 * 5666 3756 61 0 * * * * * * 3118 0 0 Y 62 3756 * * * * * 3269 * * * * * * * * 2467 2615 * * 1064 62 0 * * * * * * 3118 0 0 C 63 * 134 * * * * * * * * * * * * * * * * * 3500 63 0 * * * * * * 3118 0 0 G 64 4551 * * * * 120 * * * * * * * * * 4758 * * * * 64 0 * * * * * * 3118 0 0 K 65 * * * * * * * * 525 * * 4127 * * 2012 * * * * * 65 0 * * * * * * 3050 0 0 C 66 * 124 * * * * * * * * * * * * * * 3604 * * * 66 0 * * * * * * 3029 0 0 H 67 * 5163 * * * 1552 1034 * * * * * * 4406 * 3924 5065 * * * 67 0 * * * * * * 2559 0 0 L 68 * * 4479 * * * * * * 478 * * * * * 3284 * * * 2894 68 0 * * * * * * 2538 0 0 T 69 3845 * * * * * * * * * * * * * * * 187 4261 * * 69 0 * * * * * * 2538 0 0 L 70 * * * * * * * 2652 * 1552 3743 * * * * * * 3579 * 1551 70 0 * * * * * * 2192 0 0 K 71 * * 3094 * * * * 3401 2066 * * * * * * * * 864 * * 71 0 * * * * * * 2119 0 0 I 72 * * * * * * * 2805 2623 * * * * * * * * 1872 * 1247 72 0 * * * * * * 2136 0 0 D 73 * * 1831 2623 * * * * * * * 2885 * 1843 * 2810 * * * * 73 0 * * * * * * 2136 0 0 A 74 1844 * * * * 2623 * * 1975 * * * * 2583 * * 2859 * * * 74 0 * * * * * * 2136 0 0 E 75 2617 * * 1068 * * * * 2360 * * * * 2597 * * * * * * 75 0 * * * * * * 2104 0 0 T 76 * * * 2334 * 2459 * * * * * * * 2090 * * 1378 * * * 76 0 * * * * * * 2090 0 0 A 77 819 * * 2334 * * * 2090 * * * * * * * * * * * * 77 0 * * * * * * 2090 0 0 K 78 * * * * * * * * 389 * * * * 2081 * * * * * * 78 0 * * * * * * 1994 0 0 K 79 * * * 1598 * * * * 1637 * * * * * * 1522 * * * * 79 0 * * * * * * 1765 0 0 N 80 * * * * * * * * * * * 0 * * * * * * * * 80 0 * * * * * * 1498 0 0 L 81 * * * * * * * * * 0 * * * * * * * * * * 81 0 * * * * * * 1000 0 0 E 82 * * * 0 * * * * * * * * * * * * * * * * 82 0 * * * * * * 1000 0 0 E 83 * * * 0 * * * * * * * * * * * * * * * * 83 0 * * * * * * 1000 0 0 L 84 * * * * * * * * * 0 * * * * * * * * * * 84 0 * * * * * * 1000 0 0 K 85 * * * * * * * * 0 * * * * * * * * * * * 85 0 * * * * * * 1000 0 0 K 86 * * * * * * * * 0 * * * * * * * * * * * 86 0 * * * * * * 1000 0 0 K 87 * * * * * * * * 0 * * * * * * * * * * * 87 0 * * * * * * 1000 0 0 Q 88 * * * * * * * * * * * * * 0 * * * * * * 88 0 * * * * * * 1000 0 0 D 89 * * 0 * * * * * * * * * * * * * * * * * 89 0 * * * * * * 1000 0 0 A 90 0 * * * * * * * * * * * * * * * * * * * 90 0 * * * * * * 1000 0 0 K 91 * * * * * * * * 0 * * * * * * * * * * * 91 0 * * * * * * 1000 0 0 K 92 * * * * * * * * 0 * * * * * * * * * * * 92 0 * * * * * * 1000 0 0 S 93 * * * * * * * * * * * * * * * 0 * * * * 93 0 * * 0 * * * 1000 0 0 //