HHsearch 1.5 NAME c4ba8A_ FAM FILE c4ba8A_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4ba8A_.a3m DATE Sat Jun 15 08:33:22 2013 LENG 102 match states, 102 columns in multiple alignment FILT 104 out of 649 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 8.1 EVD 0.4636 0.7221 SEQ >ss_dssp CCSCEEEEECCCHHHHHHHSSEEEEEEEECCSSCSCCEEEEEETTSCBCCEECSCSSCCCSSSSCEEEEEEECHHHHHTTCCEEEEEECSSSSSCEEEEE CC >sa_dssp EEEBDBDCEDBDEDDBEEEEDACABACABDADDDDCADADBCBEEEEECECEDEEDDBCEEEEEBADADAEBDCECAEEEDDBBACADBEDCEEDCEDDB CD >ss_pred CCCCEEEECCCCHHHEECCCEEEEEEEEECCCCHHHHHEEECCCCCCCCCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCHHHEE CC >ss_conf 9860799918997770128718999999553071554202216874023420000154499819999999982311027984999998587672134200 29 >Consensus xxxxlvxxxpPsxxxlxxxxxxtLtCxvxgxxPxxxixxxWxxxxxxxxxxxxxxxxxxxdgtyxxxSxLxixxxxxxxgxxxtCxVxhxxlxxpixxxi xk >c4ba8A_ MGDILTFTIPPSFADIFLSKSANLTCLVSNLATYETLNISWASQSGEPLETKIKVMESHPNGTFSAKGVASVSVEDWNNRKEFVCTVTHRDLPSPQKKFI SK >UniRef50_UPI00006A289B(144-240:243) UPI00006A289B related cluster n=1 Tax=Xenopus (Silurana) tropicalis RepID=UPI00006A289B E=1e-08 s/c=0.63 id=16% cov=88% -----------SEESLTRAPIVHIMCLVSKFYPA-VIEVTWKLGGQIPSGQVTMGPSgPDEDGSYSMATILEVPSHQQTHLSSASCEVRHDSSLTVISRR LS- >UniRef50_Q4RHT4(2-101:949) Chromosome 8 SCAF15044, whole genome shotgun sequence. (Fragment) n=2 Tax=Tetraodon nigroviridis RepID=Q4RHT4_TETNG E=0.0003 s/c=0.46 id=11% cov=80% ------------------GKKYTITCVALDAKPAADITV--YKDGVELTGVESFPMSGSKDKLENTHAQVTVTALSYDNGRQLACHASSPASHRPAEARM T- >UniRef50_Q58EG3(148-240:574) Poliovirus receptor-related protein 3-like n=8 Tax=Clupeocephala RepID=PVRL3_DANRE E=1e-06 s/c=0.58 id=19% cov=56% --------------------------------------VSWETNLYGMSEAHM---QEDANGTTTTQVHYIWQPSRHAQGHTLTCVVKHPALQSDFR--- -- >UniRef50_A9UMG6(488-589:634) LOC100135349 protein (Fragment) n=5 Tax=Xenopus RepID=A9UMG6_XENTR E=2e-15 s/c=0.82 id=18% cov=96% -----VYLLPPSPQEILQQEVATITCYIKGFYPKEIFVQWMQGSASISEDKFVNTVAMKNDDeqTYFLYSKLTIPAAHWNQGNTYTCIVGHEALPLYITq QSIDK >UniRef50_C3KIY9(39-104:117) Beta-2-microglobulin n=1 Tax=Anoplopoma fimbria RepID=C3KIY9_ANOFI E=0.0006 s/c=0.68 id=19% cov=66% -------------------KENTLVCHVTGSHPPE-VRIELLRNDQVLPGGHQTDLAFEENWHYHLTKHAPFTPNGKDA---FHCRVTH----------- -- >UniRef50_UPI0001757FDA(109-223:1303) PREDICTED: similar to sticks and stones CG33141-PA n=1 Tax=Tribolium castaneum RepID=UPI0001757FDA E=3e-07 s/c=0.49 id=19% cov=95% ----LNVISPPSSVEILDHRHNSkieikenqefhLECRVRNAKPAAKIVWYRGNvELNIPDREDQIIEVPGKNGdkrvtRYDTHSRISLKPTAEDDYAEY TCEARHEALSPdiPLRTTV-- >UniRef50_P20273(141-222:847) B-cell receptor CD22 n=40 Tax=Eutheria RepID=CD22_HUMAN E=0.0003 s/c=0.57 id=16% cov=78% --------FPPHiqlPPEIQESQEVTLTCLLNFSCYGYPIQLQWLLEGVPMRQAAVTSTSLTIKSVF-TRSELKFSPQWSHHGKIVTCQLQ--------- ----- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1000 0 0 G 2 * * * * * 0 * * * * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 D 3 * * 0 * * * * * * * * * * * * * * * * * 3 0 * * * * * * 2179 0 0 I 4 * * * * * * * 1161 * 2812 * * * * * * * 1285 * * 4 0 * * * * * * 3822 0 0 L 5 * * * * * * 4204 4169 * 506 * 3859 * 4192 * 4000 * * * * 5 0 * * * * * * 5701 0 0 T 6 * * * * * * * 3365 * 4721 * 4699 * * * 4595 1752 1034 * * 6 0 * * * * * * 6499 0 0 F 7 * * * * 1761 * * 4751 * * * * * * * 3304 3847 2222 * 1823 7 0 * * * * * * 6644 0 0 T 8 4771 * * * 4456 5655 5422 2056 * 1622 * * 4586 5752 * 5217 2997 3367 * * 8 0 * * * * * * 7479 0 0 I 9 4115 * * 5811 1891 * * 4869 5717 1715 4087 * * 5901 * 5806 5655 2606 * 5690 9 0 * * * * * * 7586 0 0 P 10 4888 * 6072 3539 * 5694 5744 5568 4326 5482 * * 783 4090 5724 4600 5576 6248 * * 10 32 5507 * 2322 322 * * 7762 1000 0 P 11 * * * 5689 * * * * * * * * 28 * * * * * * * 11 105 5024 4665 2580 264 * * 7888 1707 0 S 12 4064 4884 * 4194 * * 3964 5888 4906 * * 4502 4120 * 6058 937 3608 * * 5946 12 137 3942 5284 1168 850 1491 634 8010 2710 2155 F 13 4536 5695 6198 4592 3862 4963 * 3019 * 3088 5118 6022 2417 6010 5016 3770 3489 3546 * 6085 13 36 6175 6559 1585 585 371 2142 8305 1000 2548 A 14 3984 * 5090 1601 * 5852 4501 * 3020 5421 * * 3759 4429 6281 3860 4311 3092 * * 14 52 5480 6293 1585 585 * 0 8394 1171 1616 D 15 4627 * 2066 1765 * * 5055 * 6007 5267 * 5884 * 2898 6249 3393 4508 4759 6098 * 15 82 4602 6177 1221 808 1640 558 8466 2218 2201 I 16 * * * 6204 4645 * * 1898 6092 1369 4874 5142 * 4516 * * 4511 2984 * * 16 38 5283 * 2807 222 591 1572 8483 1667 2159 F 17 4092 * 4551 3886 4771 * 4633 3870 3688 2461 5346 4402 * 3967 4073 3770 4603 4373 4636 5147 17 37 5311 * 1943 434 0 * 8460 1618 1000 L 18 4281 * 4745 4739 4638 5193 * 3178 4115 2207 6473 * 4503 4590 4605 3129 3640 3684 * 6481 18 31 6322 6784 2807 222 * * 8418 1000 0 S 19 4879 * 3808 3550 * 1720 3905 * 4443 * * 3759 6179 4800 4733 2660 4083 * * 6105 19 35 6179 6594 0 * 0 * 8605 1000 1000 K 20 4577 * 4147 3472 * 3486 * 6314 2813 6379 5466 3802 4854 2516 2642 3980 5148 * * * 20 53 6272 5421 3000 193 0 * 8624 1000 1000 S 21 4260 * 5222 2710 * 5672 5524 6173 3312 * * 4538 5633 4080 3751 2201 2554 5160 * * 21 16 6524 * 1000 1000 0 * 8567 1000 1654 A 22 2010 * 5120 6416 * 4311 6570 5048 6588 3277 6420 4462 4612 5334 6204 5109 5355 1702 * 6713 22 57 5190 6431 2112 380 * * 8518 2126 0 N 23 6486 * 5328 3600 * 6755 6218 5987 4592 * 6237 2836 4887 4859 5666 2977 1276 5613 * * 23 31 5561 * 3117 177 0 * 8570 1762 1000 L 24 * * * * 4047 * * 2729 * 669 6468 * * * * * * 3073 * 5079 24 12 6890 * 0 * * * 8612 1000 0 T 25 4997 * * 4505 * 4474 6247 4130 6578 3602 5268 6418 * 4749 5843 3272 1391 2841 * * 25 0 * * * * * * 8612 0 0 C 26 * 24 * * * * * * * * * * * * * * * * * 5926 26 31 * 5560 * * * * 8612 0 0 L 27 * * 6427 3344 5335 5680 3988 4360 5446 1889 6312 4939 * 4056 3580 4384 4155 3430 5144 5217 27 0 * * * * 966 1035 8590 0 1613 V 28 1783 * * * * * * 2687 * 3574 6405 * * * * 3954 3964 1600 * * 28 0 * * * * 0 * 8607 0 1000 S 29 6338 * * 4027 4651 6451 6370 5851 3627 4369 * 4241 4285 4470 3794 2176 2794 3607 6625 4748 29 24 6988 6837 1000 1000 * * 8612 1000 0 N 30 4888 * 3193 6581 6241 1220 5051 * 4451 * * 2658 * * 5348 2906 6442 * * * 30 71 * 4380 * * 0 * 8615 0 1000 L 31 3827 * * * 1268 3727 * * * 4198 4876 4750 * * * 3003 6246 4218 * 3042 31 46 * 4991 * * 890 1120 8429 0 2810 A 32 5108 4624 6077 7036 2577 * 4666 * 3138 5221 5555 3572 6352 6425 3740 3360 6935 6343 * 2067 32 63 * 4542 * * 738 1321 8541 0 3148 T 33 * * 4780 6427 * 6639 6630 * * 6038 * 6090 273 * 6304 5349 5412 * * 6203 33 318 * 2337 * * 0 * 8496 0 3564 Y 34 1907 * 3334 6695 * 4028 * 6150 3412 3651 5807 6128 2784 4400 4389 5102 6084 5422 * 4799 34 140 * 3432 * * 265 2577 8443 0 5647 E 35 2753 * 2229 3103 * 4123 4467 6212 4861 5394 6111 4947 3649 5346 4759 2785 * * * 6113 35 375 5033 2335 0 * 492 1792 8540 2215 4681 T 36 3576 * 4260 4333 5305 3875 5477 3455 5331 4634 6387 3217 3385 5417 4835 3663 4189 3049 6172 * 36 40 6601 5899 0 * 781 1258 8461 1000 5910 L 37 3865 * * 5607 4495 * 6161 1506 6321 2431 4553 5561 5266 * * 4681 5393 2872 * 6212 37 18 * 6361 * * 187 3040 8521 0 4392 N 38 4939 * 5052 3399 6425 * * 6688 3438 4116 6418 3597 * 3506 4012 4040 2072 2963 * * 38 11 * 7008 * * 1035 966 8602 0 1767 I 39 5695 * * 6914 3972 6312 * 2539 6560 2606 5002 * * 6647 * 4368 4880 1809 2833 * 39 11 * 6995 * * 1000 1000 8623 0 1720 S 40 6404 * * 4717 4721 * 4140 4963 3644 4048 * 4816 * 4038 4304 2783 2426 6338 2688 4746 40 29 * 5634 * * 1000 1000 8634 0 1738 W 41 * * 6355 6205 5144 * * 5507 6430 4591 6283 * * 5230 4660 * 5044 5748 468 5651 41 12 * 6906 * * 1585 585 8606 0 2373 A 42 5472 * 3997 4460 3502 5546 4567 6684 3093 3049 3839 6454 5706 3887 4670 5244 3770 4544 6473 3203 42 30 7030 6284 0 * 0 * 8609 1000 2374 S 43 4773 6221 4011 3612 * 5031 5059 5572 2576 4152 5382 3281 6474 6157 2824 3847 5229 3524 * 5368 43 118 4083 5669 1333 729 0 * 8585 3428 1000 Q 44 5612 * 2231 3397 * 2598 5793 * 3750 * * 1899 5709 4812 5325 4246 6207 * * * 44 10 7125 * 0 * 0 * 8627 1000 1691 S 45 5818 * 3372 3634 * 1307 5719 6714 3856 4716 * 3334 * 5994 6754 3783 5449 4455 * * 45 25 5855 * 2077 390 * * 8646 1702 0 G 46 4684 * 5301 3809 * 3572 4533 3779 3132 4355 * 3668 * 3131 4000 3684 4732 3092 * 6237 46 29 5668 * 1730 517 * * 8646 1647 0 E 47 4992 * 4800 2133 * 5190 5856 4644 3752 4813 * 4451 2809 4680 5518 3564 3705 3399 7674 * 47 28 * 5690 * * * * 8646 0 0 P 48 4622 * 5009 4031 * 5194 5833 2761 5316 3320 4401 * 3582 4832 3344 3925 4007 2788 6358 * 48 0 * * * * 978 1023 8633 0 1737 L 49 4664 * 4682 3085 * 5334 3673 4851 5192 3363 6375 3954 3874 5082 4120 2978 2794 5202 * 6468 49 26 * 5792 * * 0 * 8642 0 1000 E 50 5683 6611 3684 2693 * 2608 5571 4812 4630 5460 * 4485 3553 4064 4246 3371 3620 4890 * * 50 46 5607 6499 2464 289 * 0 8619 1723 1540 T 51 3081 5887 3482 4381 4638 3457 5774 4936 5477 4988 6424 5980 5173 4089 5387 3403 3510 2803 * 5166 51 11 7018 * 2322 322 * 0 8606 1000 2053 K 52 4158 6793 4378 3121 5303 5351 5088 * 4783 * 5869 5329 4529 3196 4919 3013 4129 2155 * 5426 52 24 5904 * 0 * 1341 724 8606 1805 2053 I 53 3864 * 3733 4245 4611 * 5826 5821 4339 4508 6447 4659 4583 3326 4819 3279 2370 3726 * 4887 53 70 4646 7012 2241 343 * 0 8619 2499 1540 K 54 * * 5030 4740 5526 3390 6497 5595 4319 3733 4644 3312 3416 3996 5873 3034 2655 4678 * 5397 54 56 5217 6441 769 1275 1735 515 8620 2192 1987 V 55 3755 * 4269 3908 5724 4282 5081 4648 5063 4273 5922 4632 3179 3466 6899 3189 3137 3554 * 6435 55 25 5838 * 1352 717 1502 629 8607 1726 2202 M 56 4522 * 5848 3822 * 6646 5821 5707 4042 4414 5372 4635 2622 3893 * 3875 2680 2498 5751 * 56 93 4512 5772 1556 599 883 1127 8619 2413 1646 E 57 6795 * * 2565 6081 * 6740 5582 3325 3152 5203 5575 4668 4374 3585 2817 3658 3282 * 5523 57 47 4974 * 505 1760 * 0 8598 2799 2273 S 58 5140 * 4580 3135 5612 4658 6081 6545 4416 3456 6198 4609 2523 4180 3274 3898 4204 4037 * 5433 58 55 5980 5549 701 1377 1409 682 8598 1543 2273 H 59 4470 * 2829 3632 6347 3888 3700 * 3900 4210 5128 3112 4683 3564 * 3651 3626 5743 6841 * 59 57 5031 6890 2389 306 2025 407 8577 2303 2558 P 60 4659 * 2863 3466 * 2790 5564 5417 3821 5257 * 4737 2790 6753 4636 2886 5122 5755 6442 5584 60 70 6626 4742 1585 585 * 0 8599 1000 2683 N 61 4987 6420 1428 5061 5510 3234 6537 * 5598 * * 1963 6460 5051 * 3609 * * * 6009 61 123 6393 3840 3459 138 2836 218 9341 1000 4021 G 62 6271 * 4394 6176 * 985 5585 6354 4087 5495 6248 3464 6639 * 5383 3392 5202 * 4439 * 62 28 6505 6927 2322 322 1963 428 9242 1000 5263 T 63 * 6373 * 5401 6461 4245 * * 3536 3940 6372 4516 * 6585 4489 3177 1127 4764 * 4932 63 0 * * * * 1473 644 9278 0 4722 F 64 5217 * 6593 5893 1608 6347 5916 4978 6520 5142 6285 * * 4792 6551 3874 6326 5591 * 1486 64 16 * 6535 * * 821 1205 9357 0 3817 S 65 4363 5637 4224 7057 3942 * * 4439 5655 5339 6184 3226 * 3504 3655 2125 2975 4445 6427 6331 65 0 * * * * 350 2216 8588 0 2692 A 66 2724 5652 * * * 6362 * 3983 4647 2906 4412 * * 4519 5286 3876 2764 2348 6688 4563 66 14 * 6727 * * * 0 8646 0 1000 K 67 5509 * 6674 4077 4529 * 3965 3782 5047 5461 6852 4521 * 5690 3797 2267 2599 3992 4825 4026 67 16 * 6491 * * 1152 862 8646 0 1558 G 68 4099 6574 6316 5925 6788 4064 6426 6436 5604 5416 * 4752 6889 6652 5216 762 4335 4488 * * 68 0 * * * * 0 * 8627 0 1753 V 69 5275 * 5436 4161 5460 * 5369 4790 3725 4303 6722 4998 * 3216 3327 3696 2844 2899 5056 4126 69 11 * 7001 * * * * 8644 0 0 A 70 5861 6857 * * 5616 * 5743 3816 * 566 6653 * 6953 * * 6345 4874 3509 6391 5340 70 0 * * * * * 0 8650 0 1000 S 71 5870 * 6644 4558 * 6437 5019 4904 4543 4099 * 3567 5545 4857 2761 3111 1994 4312 5150 5626 71 15 * 6572 * * 0 * 8650 0 1000 V 72 6082 * * * 3021 6476 * 2009 * 2404 6039 * 6430 6385 * 6372 6442 1657 6743 5348 72 0 * * * * 0 * 8631 0 1000 S 73 6532 6420 4936 5241 7380 5461 6384 4957 4656 4626 5606 3793 2963 4286 6833 2320 2132 4701 * 5818 73 55 * 4753 * * * * 8514 0 0 V 74 2616 * * 6555 5444 6737 5546 5314 4398 3534 6395 5580 1857 5883 5431 3617 3929 3090 * * 74 44 * 5045 * * 598 1558 8566 0 2428 E 75 3698 6707 5165 2781 6414 3932 5467 6410 4494 5272 * 5442 6631 3725 6494 2048 2913 3974 * * 75 66 5141 5956 0 * 1896 451 8543 1455 2931 D 76 4025 * 3692 2036 5670 5599 * 6373 3454 4193 6696 4671 3391 4525 3306 4565 4291 6385 6264 6382 76 18 * 6360 * * 2158 366 8560 0 3222 W 77 6604 * 3987 2765 6414 5291 5574 4602 6313 4829 5323 5501 6956 4113 5108 4096 5086 5820 1493 5078 77 12 * 6934 * * 312 2360 8561 0 3120 N 78 6093 * 1668 3135 6409 6394 3848 6496 3827 4561 4998 2829 6825 5120 5104 4289 4981 * * 5760 78 67 * 4457 * * 1035 966 8516 0 1596 N 79 4382 6522 2759 4815 6497 6550 2724 4356 3107 4670 * 3095 5928 4212 4030 3446 6569 5666 6631 * 79 22 * 6029 * * 1416 678 8527 0 3132 R 80 6743 * 3740 5459 * 913 5586 * 5564 5784 * 3414 4994 * 4288 5005 4119 * 5925 5621 80 16 6529 * 1000 1000 1175 844 8591 1000 2789 K 81 2600 * 4207 4396 * 3233 * 6446 2614 5890 5750 4580 6932 4112 4510 3642 2807 4571 * * 81 0 * * * * 0 * 8629 0 1843 E 82 5931 * 6500 2630 * 7071 5806 4238 4289 5491 6664 3647 5710 4328 3573 3043 2781 3040 6745 5723 82 42 5659 6836 0 * * * 8514 1193 0 F 83 6537 * * * 1517 * 6239 3307 * 4068 * * * * * * * 3119 * 1512 83 0 * * * * * 0 8508 0 1000 V 84 4418 * * 4899 * 5322 5098 4056 5844 * 6568 * * 4775 3320 2243 1444 4262 * 6682 84 0 * * * * * 0 8508 0 1000 C 85 * 0 * * * * * * * * * * * * * * * * * * 85 19 6258 * 3170 170 0 * 8508 1000 1000 T 86 6905 * 6531 2841 * * 4344 4047 3884 4089 5149 4788 * 3772 2615 5238 3867 2580 4571 * 86 0 * * * * * * 8515 0 0 V 87 2115 * * * * 5508 * 5847 * 4760 6500 * * * * 5030 5603 712 * 5619 87 15 6578 * 3322 152 * * 8515 1000 0 T 88 3782 * * 3184 * 4827 6938 5440 3626 6664 5109 3020 * 3443 3674 2855 2947 4323 5670 * 88 30 5589 * 1807 485 * * 8494 1701 0 H 89 * * 6577 * 4729 * 666 6491 * 6214 * 2764 * 4178 6507 4483 * 6199 * 5317 89 0 * * * * * * 8471 0 0 R 90 4879 6186 3658 2115 6355 * * * 3306 6195 * 4788 1822 4386 3715 5335 4747 6620 * * 90 76 * 4291 * * * * 8373 0 0 D 91 2198 4961 3285 2854 * 3226 5762 4823 * 6393 * 5585 6071 5879 * 2421 4209 4540 * * 91 0 * * * * 984 1016 8131 0 2694 L 92 * * * * 5842 5942 * 4405 * 789 * 4756 * 4423 * 2462 4397 6459 * 5934 92 47 6098 5844 3322 152 0 * 8761 1000 1644 P 93 5351 * 6005 5039 * 4109 4169 5811 3046 4935 * 4495 1760 3470 4387 3099 4952 5830 * * 93 49 * 4919 * * 0 * 8705 0 1000 S 94 4955 * 5734 2781 * 5102 5920 * 3128 4931 6371 3158 6094 4310 3625 2769 2657 5735 * 5922 94 109 3777 * 839 1181 0 * 8672 2604 1344 P 95 4836 * 4470 4381 * 4195 * * 5929 * * 5139 895 4787 5949 3974 4044 4827 * 5450 95 0 * * * * * * 8655 0 0 Q 96 4288 * * * 4332 * * 2367 6154 1709 5019 * * 5128 * 6007 4387 2153 * 4729 96 0 * * * * * * 8655 0 0 K 97 5774 * 4167 2141 * * 5831 4960 2310 5631 * 4347 * 3592 3774 4907 3100 3782 * * 97 0 * * * * * * 7922 0 0 K 98 2643 * 4828 5763 * 4776 * * 1569 5713 5862 5547 * 3340 2810 4890 3643 * * * 98 0 * * * * * * 7856 0 0 F 99 5762 * * 5083 4095 5578 5343 * 4535 * 5841 3450 * * 3960 1953 1600 4521 * * 99 0 * * * * * * 7643 0 0 I 100 * * * * 4451 * * 1168 * 2959 3628 * * * * * 3666 2179 * * 100 0 * * * * * * 7370 0 0 S 101 5093 * * * 4700 * 3536 * * * * 4144 * * 2692 1393 1978 * * * 101 0 * * * * * * 6867 0 0 K 102 * * * * * * * * 429 * * * * 3706 2470 * * * * * 102 0 * * 0 * * * 4710 0 0 //