HHsearch 1.5 NAME c4b6aX_ FAM FILE c4b6aX_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4b6aX_.a3m DATE Wed Jan 9 23:53:44 2013 LENG 120 match states, 120 columns in multiple alignment FILT 112 out of 201 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.3 EVD 0.4318 0.1221 SEQ >ss_dssp CCCCCSSSCCCCCCCCCCCCCCSSCSSSSCCCCSSCHHHHEEEECCCHHHHHHHHHHCEEEEEECTTCCHHHHHHHHHHHSCCCEEEEEEEECTTSCEEE EEEECTTCCHHHHHHHHTCC >sa_dssp EEEEEEDEEEEEEEEEEEEEEEEEEEDEEEDEEECDBEDBBDDCBEDEEBBEDBDEDCCAAACABDEBDDEDADEAADDCBEADBEEBDCDECEEDCCCA CADACEEDDACEBADEDECE >ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEEEECCCCEEEE EEEECCCCCHHHHHHHCCCC >ss_conf 9414503200077313621278875346766554783452113754778898772078499997376898999999999977604678989758987899 99987997368888623769 >Consensus xxkxxtxxxfxxpxtlxxxxxpkxxxxxxxxxxkxdxyxIIkxPixTEKaxxxxexxNxyxFxVdxxAnKxeIKxAVExlFxVkVxkVNTlxxxxkxKKA xVxLxxxxdAxdvaxkiGxi >c4b6aX_ ALKVRTSATFRLPKTLKLARAPKYASKAVPHYNRLDSYKVIEQPITSETAMKKVEDGNILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKA YVRLTADYDALDIANRIGYI >UniRef50_Q06SH7(3-72:118) 50S ribosomal protein L23, chloroplastic n=1 Tax=Stigeoclonium helveticum RepID=RK23_STIHE E=5e-12 s/c=1.03 id=30% cov=58% --------------------------------------DLIKYPVINFKSYRALVLNNQYMFNVDLRLTKPQIKKLIEQYFEVNVISVNT-HRPPRKKRL YIQTSPGY------------ >UniRef50_Q7UN18(6-102:107) 50S ribosomal protein L23 n=5 Tax=Planctomycetaceae RepID=RL23_RHOBA E=8e-14 s/c=0.80 id=33% cov=71% ------------------------PPKPVERKIELEPHQILLKPLVTEKGVHRATRNNQYAFQIHRDATKLDVKKAVEHLFDVKVLKVRTQTRKGKarrf kykigrtsdWKKAIVSLHEDH------------ >UniRef50_D1JEA7(2-82:82) 50S ribosomal protein L23P n=1 Tax=uncultured archaeon RepID=D1JEA7_9ARCH E=2e-12 s/c=0.91 id=28% cov=68% ---------------------------------------VLKHVLPSEKATLMIDAENKLPFVVDLRANRAEIKREVEIVFETPVKSVRTMISSKGKKKA IIEFEDEGKAKEVGTSLGIL >UniRef50_Q4FLM0(1-97:97) 50S ribosomal protein L23 n=3 Tax=Candidatus Pelagibacter RepID=RL23_PELUB E=2e-05 s/c=0.52 id=34% cov=56% -------------------------------------YDKILSPMVTEKTTNLSEQN-KIVFKVPRAANKTNLKKNIEKIFKVNVTKINIINKQNrtkva rgkkvnvqGYKKAIITL---------------- >UniRef50_Q5FFU2(2-65:96) 50S ribosomal protein L23 n=5 Tax=Anaplasmataceae RepID=Q5FFU2_EHRRG E=2e-06 s/c=0.83 id=32% cov=52% -------------------------------------FSIIHSSIITEKAVLLNEKFNKYAVYVSGDADKKTIKKAFKVVFGLDVVRINILNQKGKKK-- -------------------- >UniRef50_P75578(1-61:237) 50S ribosomal protein L23 n=1 Tax=Mycoplasma pneumoniae RepID=RL23_MYCPN E=1e-05 s/c=0.84 id=33% cov=50% ----------------------------------MDVTNVLLKPVLTEKVYfNQMGETKKYVFVVNPKASKTRVKLAFELVYGIKPLKVNTLIR------ --------------------- >UniRef50_C1DYL9(30-89:160) Ribosomal protein L23 n=2 Tax=Micromonas RepID=C1DYL9_9CHLO E=5e-05 s/c=0.81 id=22% cov=34% -----------------------------------------------------------VTFITRPAVTKVDVKECLEKVYGVGVERVHTVNYEGKKKR- -------------------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * A 1 0 * * * * * * * * * * * * * * * * * * * 1 0 * * * * * * 1871 0 0 L 2 * * * * * * 1616 * 1579 1561 * * * * * * * * * * 2 0 * * * * * * 1871 0 0 K 3 * * * * * * * * 0 * * * * * * * * * * * 3 0 * * * * * * 2753 0 0 V 4 3716 * * * * * * 1447 * * 4142 * * * * 3608 2984 1776 * * 4 0 * * * * * * 2788 0 0 R 5 * * * * * * * 3801 * * * * * * 675 * 4288 * 3189 2826 5 0 * * * * * * 2973 0 0 T 6 * * * * * * * * 3898 * * 3303 * * 3287 * 456 * * * 6 0 * * * * * * 3166 0 0 S 7 3424 * * * 3372 * * * 3240 * * 2813 * * 2492 1379 * * * * 7 0 * * * * * * 3165 0 0 A 8 4232 * * * * * * 3567 * 1901 * * 2675 * * * 2135 2249 * * 8 0 * * * * * * 3308 0 0 T 9 3680 * * * * * 3824 * 2557 3465 * * * 2729 3567 * 1491 * * * 9 0 * * * * * * 3308 0 0 F 10 * * * * 206 * * * * 3571 * * * * * * * 4346 * * 10 0 * * * * * * 3364 0 0 R 11 * * * * 3078 3742 2770 * 2049 * * * * * 2410 * * * 2926 3339 11 0 * * * * * * 3364 0 0 L 12 * * * * * * * * 2057 4332 * * * 2926 955 * 4002 * * * 12 0 * * * * * * 3364 0 0 P 13 4002 * * * * * * * * * * 3742 213 * * * * * * * 13 0 * * * * * * 3364 0 0 K 14 3742 * * * * * 2542 * 765 * * * * * 3630 3571 * * * * 14 0 * * * * * * 3364 0 0 T 15 3832 * * * * * * 3519 * * 3733 * 4025 * * 4176 620 * * * 15 0 * * * * * * 3529 0 0 L 16 * * * 3733 * * * * 3519 668 * * * 3832 4339 * * * * 3496 16 0 * * * * * * 3529 0 0 K 17 4025 * * * * * 4317 * 2161 * * 3519 * 4339 2374 3733 * 2877 3013 * 17 0 * * * * * * 3529 0 0 L 18 * * * * * * 3133 3519 * 956 * * 3733 * 3496 * 4339 3832 * * 18 0 * * * * * * 3529 0 0 A 19 2599 * * 4556 * * * * 3337 * * 3567 2080 2684 2738 * * * 3900 * 19 0 * * * * * * 3696 0 0 R 20 3575 * * * * * * * 1361 * * 3567 * * 1177 * * * * * 20 0 * * * * * * 3696 0 0 A 21 2700 * * 4284 * * * 2955 2228 * * 2432 * 3315 4028 * 3249 * * * 21 0 * * * * * * 3696 0 0 P 22 4488 * * * 3944 * * * * * * * 513 * * 2735 * 4667 * * 22 0 * * * * * * 3696 0 0 K 23 3268 * * * * * * * 827 2952 * 3900 * 4332 3527 * * * * * 23 0 * * * * * * 3696 0 0 Y 24 3925 3640 * * 3127 * 3944 3567 * * * * 3575 * * * 3900 * * 1187 24 79 4233 * 1585 585 * * 3696 1000 0 A 25 3342 * * 3328 * * * * * 3983 * 3676 1112 * * 3646 4298 3902 * * 25 0 * * * * * * 3726 0 0 S 26 * * * * * * 4078 * 3836 * * 3055 3928 4410 1005 2843 * * * * 26 0 * * * * * * 3726 0 0 K 27 * * * * * * * 2754 1537 * * 2287 * 4298 2594 4496 * 4590 * * 27 94 * 3983 * * * * 3726 0 0 A 28 2779 * * * * * * 4443 * 2757 * 3635 2876 * 3938 1767 * 3562 * * 28 0 * * * * 0 * 3666 0 1000 V 29 4053 * * 4410 * * * 2618 2329 * 3983 * * * * 4727 2640 1893 * * 29 88 4078 * 0 * * * 3726 1000 0 P 30 4727 * * 2989 * * * * 3381 * * 3676 1043 * * 3836 3954 4569 * * 30 0 * * * * * * 3726 0 0 H 31 3902 3836 * 4569 * * 4703 2584 3057 * * * * * 1689 4590 3561 4078 * * 31 70 * 4410 * * * * 3726 0 0 Y 32 * * * * * 4020 * * 2707 4559 2995 * * 3057 2703 3285 3117 * * 2991 32 0 * * * * 0 * 3781 0 1000 N 33 * * * * * * * 3965 1968 4343 * 1766 2925 * * 2604 4614 * * * 33 0 * * * * * * 3871 0 0 R 34 * * 2991 4262 * 4852 * * 1062 * * * * 4238 2475 5076 * * 4444 * 34 92 4016 * 0 * * * 3848 1096 0 L 35 * * 5030 5388 * * 4014 5058 * 1615 1405 3723 * * 4751 * * 5651 5918 * 35 0 * * * * * * 4199 0 0 D 36 5635 * 689 5125 4584 6029 * * 3605 * * 4370 * * 5278 5485 3393 * * * 36 0 * * * * * * 4264 0 0 S 37 4151 6084 5570 * 5761 * 2589 3397 3368 3690 4607 * 2135 * 5927 3344 4919 5774 * 5707 37 0 * * * * * * 4318 0 0 Y 38 * 6044 5426 * 2207 * 3791 5429 * 6050 * 5122 * 4489 6422 5935 5218 * * 982 38 17 6450 * 4585 61 * * 4506 1000 0 K 39 4412 * 1695 4166 * 4891 * * 3102 * * 3340 6619 2923 4073 3185 6656 5776 * * 39 0 * * * * * * 4688 0 0 V 40 * * * * * * * 1180 6040 2780 * * * 4669 * * 6685 1519 * * 40 35 * 5403 * * * * 4756 0 0 I 41 * * * * 5516 * * 807 * 1617 * * * * * * * 3633 * * 41 0 * * * * * 0 4713 0 1000 E 42 6258 * 5554 5148 * * 5962 2773 1288 3250 6869 * * 4374 2805 * * 4045 * * 42 0 * * * * * 0 4713 0 1000 Q 43 3924 6601 * 6612 4920 4017 3944 * 2496 6012 6414 * * 4361 3153 2810 5179 * * 2198 43 0 * * * * 0 * 4713 0 1000 P 44 4627 * * * * 5627 * 5653 * * * * 274 6618 * 4562 * 4645 * * 44 0 * * * * * * 4775 0 0 I 45 * * * * * * 4269 2102 * 1872 4758 * 4647 5191 4511 5661 * 2280 5692 4357 45 0 * * * * * * 4787 0 0 T 46 4859 * 5525 * 4604 * 6129 2011 5735 2481 * * 6247 5380 6611 * 2385 2296 * * 46 10 7216 * 0 * * * 4787 1000 0 S 47 * * * * * * * * 5899 5789 * 3767 * * * 2191 572 * * * 47 0 * * * * * * 4786 0 0 E 48 * * 3503 364 5346 * * * 4887 * * * * 5789 * 6567 5271 * 5526 * 48 0 * * * * * * 4786 0 0 T 49 * * * 5877 * * * * 284 6783 * 5789 5899 * 6525 4118 5871 5526 6604 * 49 42 5789 6567 1000 1000 * * 4786 1000 0 A 50 1386 * 6645 * * 5093 * 6341 5232 6101 5880 5662 * 6388 * 1850 2605 4864 * * 50 11 * 7032 * * 0 * 4791 0 1000 M 51 4216 * 5867 6894 5730 * * 5126 * 3402 2576 3979 * 5042 * 3641 1858 3775 * 3505 51 44 7096 5440 0 * 0 * 4784 1000 1000 K 52 4528 * 5075 4638 5211 4418 6570 4608 2322 3754 4807 3356 * 4031 3044 4136 4221 4921 5649 6937 52 9 * 7302 * * 0 * 4788 0 1848 K 53 3327 6704 5766 4307 * * 6603 3825 3042 1694 3110 5467 * 3583 5196 5086 * 4968 * * 53 16 6507 * 3322 152 0 * 4790 1000 1000 V 54 3809 * * * * 4265 * 2349 4731 2307 3001 6004 * 4690 3079 5504 3784 4373 * * 54 76 4997 5650 324 2315 * * 4786 1944 0 E 55 5765 * 2988 694 6492 4913 * * 5240 5250 * * * 5230 * 3841 6578 5393 * 6661 55 28 * 5715 * * 0 * 4756 0 1000 D 56 4721 * 3020 2345 5078 6486 * 6659 2026 6414 * 4181 * 3521 4236 3632 4302 7070 * * 56 121 * 3633 * * 0 * 4778 0 1457 G 57 5437 6780 4596 3258 3739 5254 4384 4524 4465 4218 6167 1596 * 4321 7237 3990 5187 * * 4693 57 163 * 3225 * * 0 * 4741 0 2654 N 58 * * 5382 5755 * 3565 * * 3486 * * 531 * * 4372 4529 * * * * 58 18 * 6329 * * 0 * 4788 0 2940 I 59 * 6402 * 5894 * * * 6654 1785 * 6095 * * 2111 4126 6590 2008 3201 * * 59 0 * * * * 0 * 4821 0 1000 L 60 * * * * 4639 * * 2887 * 2142 5629 * * 6880 * 5511 * 3594 * 1106 60 0 * * * * * * 4849 0 0 V 61 3288 6409 * 5782 7224 5670 6591 5053 * 7148 6421 * 6391 4701 * 3657 1685 1585 * 6970 61 0 * * * * * * 4951 0 0 F 62 * * * * 139 * * 4734 * 5439 * * * * * * * 5481 * 6777 62 0 * * * * * * 4951 0 0 Q 63 5835 * 3873 3192 6253 * 6819 2082 3031 3295 6088 4953 * 4717 4415 * 5093 3449 6558 4083 63 0 * * * * * * 4951 0 0 V 64 4919 4740 * * * * * 4676 * * * * * * * * 6383 187 * * 64 0 * * * * * * 4881 0 0 S 65 3465 * 1332 3831 6886 6784 4564 * 5524 6022 * 3681 4398 5629 3906 3183 6999 6074 * * 65 0 * * * * * * 4881 0 0 M 66 4105 * * 6396 * 6264 6739 4178 2678 3393 6066 4824 2638 6732 2389 4579 5048 3179 7089 * 66 0 * * * * * * 4881 0 0 K 67 4876 6584 2601 4206 6008 4546 5810 * 2126 7156 6248 3415 * 4571 2636 4262 4660 * 6995 6074 67 0 * * * * * * 4881 0 0 A 68 574 6897 * * 7018 * * * * 3702 5086 6248 * * * 4212 5478 3386 * 5584 68 0 * * * * * * 4881 0 0 N 69 * * 4522 * * * * 6135 6639 * * 1162 * * 6365 3369 1409 * * * 69 0 * * * * * * 4881 0 0 K 70 * * * * * * * * 73 * * * * * 4334 * * * * * 70 0 * * * * * * 4881 0 0 Y 71 4896 * 4858 4785 6272 5718 4027 3168 4112 4083 * 5666 2778 4499 3640 3956 2812 4539 * 4857 71 0 * * * * * * 4881 0 0 Q 72 5883 * 2953 1604 * 6992 * * 4641 5925 6397 5846 * 1638 5809 4581 6264 6026 6008 7258 72 0 * * * * * * 4881 0 0 I 73 * * * * 5563 * * 452 * 4858 4487 * * * * * 6181 2690 * * 73 0 * * * * * * 4881 0 0 K 74 4918 * * 5078 * 6593 * * 494 * 6514 * * 6291 2670 5134 * 7028 * * 74 0 * * * * * * 4881 0 0 K 75 3558 * 4260 2526 * * 4804 7393 1747 4792 * 4176 * 3689 3423 4692 5286 6463 * 6393 75 0 * * * * * * 4881 0 0 A 76 411 6383 * 4303 6151 * * 5376 * 4097 * 6764 * * * 5761 * * 5117 4950 76 0 * * * * * * 4881 0 0 V 77 * * * * 2673 6247 * 1925 * 4477 5342 * * * * * * 1008 * * 77 0 * * * * * * 4881 0 0 K 78 7180 6074 * 579 * * * 5708 3006 6291 * 5113 * 4454 5970 4608 5571 * * * 78 0 * * * * * * 4881 0 0 E 79 4218 * 4956 3031 5801 4831 5141 5261 2254 3749 5428 5272 * 3383 4454 3325 3717 5652 * 6181 79 52 5559 6151 1585 585 * * 4881 1000 0 L 80 4124 6002 * * 4473 * * 2453 5321 1243 4186 * * 5814 4484 * 6656 3388 * 5109 80 0 * * * * 0 * 4872 0 1000 Y 81 * 5003 * * 687 * * * 6151 5152 * * * * * 5793 * * 6880 1841 81 22 6045 * 848 1169 * * 4881 1555 0 E 82 * * 2234 3405 * 2213 * * 2509 * * 2301 * 4370 * 4309 * * * * 82 26 5823 * 0 * * * 4871 1535 0 V 83 * * * 6370 * * * 2840 5097 4723 * * * 6459 * 6197 5277 481 * 6149 83 0 * * * * * * 4871 0 0 D 84 5454 * 3707 4212 * 5813 6230 * 912 * * 4100 4693 6090 5494 4619 3306 6864 * * 84 0 * * * * * * 4871 0 0 V 85 6583 4829 * * * * * 4240 * * 5454 * 4007 * * * 4969 350 * * 85 0 * * * * * * 4871 0 0 L 86 2855 * 4464 2959 * 6649 * 2948 3334 2783 * 4852 * 4847 5945 4629 4008 3112 * * 86 0 * * * * * * 4871 0 0 K 87 3459 * 3654 5574 * 4165 * * 1257 * * 4150 * 6634 3820 2497 6622 6649 * * 87 0 * * * * * * 4871 0 0 V 88 * 5866 * * * * * 2530 * * 6224 * * * * * 5921 359 * * 88 31 6824 6360 3700 115 * * 4871 1000 0 N 89 5930 6519 * * * * 4604 * 5903 * * 576 * 5360 2624 6846 4358 * * * 89 0 * * * * * 0 4854 0 1000 T 90 6509 * * * * * * 3389 * 5306 5690 * * * * 3817 553 3377 * * 90 43 5921 6257 3771 110 * 0 4857 1540 1000 L 91 4129 5843 * * 5515 * 4978 3798 7182 1251 3584 5843 * 3592 5796 4076 6658 3480 * 6359 91 0 * * * * 913 1093 4827 0 1557 V 92 * * * * * 6762 5190 1619 5937 5945 5047 1358 * * 4850 * 3981 3653 * 7059 92 83 4436 6734 3700 115 0 * 4838 2031 1000 R 93 6019 4757 * * 5362 7001 * 6064 3949 4006 4134 5066 5303 5992 2001 4555 2466 3377 * 3714 93 13 6850 * 3700 115 0 * 4980 1000 1000 P 94 4294 * 5316 5494 4959 * 6316 4738 2481 4704 4138 6197 1618 6389 4146 3725 5161 5700 * 6090 94 55 4751 * 3772 110 * * 4896 1930 0 N 95 6492 * 4159 6585 * 1432 6662 * 2889 6584 * 2859 5993 6650 3480 3899 4426 6090 * 6043 95 40 5193 * 3700 115 * * 4896 1498 0 G 96 4869 * 4351 * 6024 1488 * * 1157 * * 6052 * * 3908 6090 * * * * 96 287 2889 4458 3639 121 * * 4896 2933 0 T 97 6167 * 4948 3301 6614 6578 * * 1875 3769 5994 5289 5847 5850 4926 6329 3959 4620 3007 2890 97 112 3739 * 3731 113 0 * 4871 2490 2123 K 98 * * * * * * * * 184 * * 4311 * * 4191 * 6078 * * * 98 0 * * * * * * 4896 0 0 K 99 * * * * * * 6255 6005 537 5453 * 6213 * 6243 2372 5214 * 6293 * * 99 0 * * * * * * 4928 0 0 A 100 397 * * * * * * 5683 * 5567 3235 * * 6368 3938 * * 5939 * * 100 0 * * * * * * 4665 0 0 Y 101 * * * 6143 2364 * * 2210 * 5695 5936 * * * * 6023 4292 6173 5372 1200 101 0 * * * * * * 4579 0 0 V 102 * 5339 * * * 5777 * 2244 * * * 5747 * * * * 4091 581 * * 102 0 * * * * * * 4566 0 0 R 103 * 5071 6194 4882 * * 6199 5583 2022 * * * * 4306 1769 3434 2583 6428 5214 * 103 0 * * * * * * 4561 0 0 L 104 * * * * 3197 * * 4955 * 316 * * * * * * 5218 5117 * * 104 0 * * * * * * 4508 0 0 T 105 1578 * 4953 3989 * 4344 4227 5872 3493 * 5532 * 3847 * 6347 2527 4269 4946 * * 105 51 * 4844 * * * * 4473 0 0 A 106 2706 * 3378 2561 * 5985 5555 * 2674 * * 4409 1865 * * 3930 * * * * 106 0 * * * * 0 * 4485 0 1480 D 107 4824 * 1467 2566 * 2068 * * * * * 3833 4435 * * 4200 5336 * * * 107 0 * * * * * * 4492 0 0 Y 108 * * 3907 5284 4982 2796 2996 5228 5412 * * 4180 * 3402 * 4165 * 3066 * 2111 108 24 * 5948 * * * * 4479 0 0 D 109 3780 * 1210 2448 * * * * 3661 * * 4281 5677 3914 6283 5171 5116 5270 * * 109 34 * 5430 * * 0 * 4370 0 1000 A 110 350 * * * * * * * * 4575 * * 4709 5151 5400 4224 5067 * * * 110 0 * * * * 0 * 4169 0 1000 L 111 * * * 2891 5509 * * 1937 4889 1599 4379 * * 5026 4023 4089 * 5686 * * 111 0 * * * * * * 4190 0 0 D 112 4595 * 839 1780 * * * * 5129 * * 4291 * * * * * * * 5126 112 0 * * * * * * 4190 0 0 I 113 4844 * * * 5060 * * 1947 * 3234 * * * * * * 4946 1019 * 4513 113 0 * * * * * * 4142 0 0 A 114 424 * * * 5241 3594 * * * 4085 * * * * * * 3982 5435 * * 114 0 * * * * * * 4142 0 0 N 115 3843 * * 4924 * 5202 * * * 4732 4694 1719 * * * 1762 2615 4957 * * 115 0 * * * * * * 3994 0 0 R 116 * * * 3852 * * * * 989 * * 4980 * 3874 1811 4567 * * * * 116 0 * * * * * * 3770 0 0 I 117 * * * * * * * 1047 * 1324 3657 * * * * * * 4742 * * 117 0 * * * * * * 3770 0 0 G 118 * * * * * 131 * * 4400 * * * * * * * * * 4656 * 118 0 * * * * * * 3759 0 0 Y 119 * * * * 3311 * * 1743 * 2194 3283 * * * * * 4790 2598 * 3680 119 0 * * * * * * 3692 0 0 I 120 * * * * * * * 1193 * 1457 4019 * * * * * * 2869 * * 120 0 * * 0 * * * 3430 0 0 //