HHsearch 1.5 NAME c4awlA_ FAM FILE c4awlA_ COM /bmm/www/servers/phyre2/HH/hhmake -i c4awlA_.a3m DATE Mon Feb 4 12:07:34 2013 LENG 62 match states, 62 columns in multiple alignment FILT 80 out of 84 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.8 EVD 0.4577 1.6375 SEQ >ss_dssp CCCSSSSCTTTHHHHHHHHHHHHHHHHSSCCCSSCCSCSCHHHHHHHHHSCCCGGGSCCCCC >sa_dssp EEDEEEDDEEEDEEDDDDDEDDEEDDEEDEDEEEEEEDEDDDECEECEEDEDCEEDEDEEEE >ss_pred CCCCCEECHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCC >ss_conf 98881258999999999999999998738732210466435899998417736898763579 >Consensus xeePiyVNaKQyxxIlrRRxxRaklexxxxxxxxrkxYlhESRHxHAmxRxRgxgGRFlxxk >c4awlA_ MEEPLYVNAKQYHRILKRRQARAKLEAEGKIPKERRKYLHESRHRHAMARKRGEGGRFFSPK >UniRef50_Q9M9X4(135-199:295) Nuclear transcription factor Y subunit A-2 n=5 Tax=Arabidopsis thaliana RepID=NFYA2_ARATH E=1e-20 s/c=1.54 id=50% cov=100% -DSTIYVNSKQYHGIIRRRQSRAKaaavLDQKKLSSRCRKPYMHHSRHLHALRRPRGSGGRFLNTK >UniRef50_C4M6U7(60-117:185) CCAAT-binding transcription factor, putative n=2 Tax=Entamoeba RepID=C4M6U7_ENTHI E=1e-15 s/c=1.45 id=51% cov=95% ----IFVNDKQYNRIMKRRNERRALQFRSISSSNKQKFKYESRHLHAMNRQRGEGGRFCSKK >UniRef50_A8X5G0(330-385:523) Putative uncharacterized protein n=2 Tax=root RepID=A8X5G0_CAEBR E=2e-14 s/c=1.43 id=53% cov=92% --KPVPVNPRQFVRILRRREMRARQEDSGVIPVERQAYLYESRHQHALSRVRLSDGRF---- >UniRef50_A0BD13(71-149:158) Chromosome undetermined scaffold_10, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0BD13_PARTE E=3e-07 s/c=0.71 id=43% cov=98% -QEPRYVNQKQQSNLlipryrrimirrikraqqaLKLEELRTK-QATKVLDKSNQKYIYESRHQHALKRERGPDGKFLKKQ >UniRef50_Q8SVZ7(54-111:123) Unclear n=1 Tax=Encephalitozoon cuniculi RepID=Q8SVZ7_ENCCU E=4e-13 s/c=1.31 id=52% cov=94% --QPLYVNAKQLNWIKKRKARRDMLDS--LMITNRRNYLHESRHKHAMKRLRAPSGRFLTK- >UniRef50_B6TTA2(173-235:296) Nuclear transcription factor Y subunit A-10 n=3 Tax=Andropogoneae RepID=B6TTA2_MAIZE E=5e-14 s/c=1.25 id=45% cov=100% -DEPVYVNAKQFNGILrrRLARAKRAAATDRRVSGSRKPYLHESRHLHALRRARGTGGRFLNTR >UniRef50_A4SAN5(1-59:121) Predicted protein n=1 Tax=Ostreococcus lucimarinus CCE9901 RepID=A4SAN5_OSTLU E=2e-05 s/c=0.86 id=42% cov=95% MDAAVYVNAKQYDAIVRRRQKRARANATRTPGVVNAK--HPSRSAHAKNRIRGKNGKYLT-- >UniRef50_Q338K5(67-125:166) CCAAT-binding transcription factor n=1 Tax=Oryza sativa Japonica Group RepID=Q338K5_ORYSJ E=8e-11 s/c=1.16 id=50% cov=97% -DEPIYVNAKQYHAIIRRRQRRKIVGSEDKVAAIRKRILVEARQKQAKLRHRGKGGRFIS-- >UniRef50_UPI00019A5BC1(343-421:582) hypothetical protein TTHERM_00486670 n=1 Tax=Tetrahymena thermophila RepID=UPI00019A5BC1 E=9e-10 s/c=0.82 id=47% cov=95% -EEPRYVNAAQFKRMMIMRIKRAARDLkQNKIVPQReirskettefqqqqqnpqksKKYKYESRHKHATNRIRDSKGRFI--- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 4098 * 2853 1567 * * * * * * 1103 * * 1 0 * * * * * * 2217 0 0 E 2 * * 1620 971 * * * * * * * * * 2604 * * * * * * 2 0 * * * * * * 2605 0 0 E 3 3710 * 5505 814 * 3843 * * 4339 * * * * 3010 * 3729 * 6142 * * 3 13 6818 * 1000 1000 * * 2755 1000 0 P 4 4473 * * * * 5605 * * * * * * 221 * * * 4279 5318 * * 4 0 * * * * * * 2772 0 0 L 5 * * * * 5762 * * 1341 * 2122 5895 * * * 3469 * 6212 2148 * 6547 5 0 * * * * * * 2813 0 0 Y 6 * * * * 2663 * * * * 5045 5575 * 5294 * * * * * * 386 6 0 * * * * * * 2813 0 0 V 7 * * * * * * * 5357 * * * * * * * * * 36 * * 7 0 * * * * * * 2813 0 0 N 8 * * * * * * * * * * * 0 * * * * * * * * 8 0 * * * * * * 2813 0 0 A 9 511 * 5083 * * * * 4725 * * * * 2529 4577 * 5986 * * * * 9 0 * * * * * * 2861 0 0 K 10 4498 * * * * * * * 147 * * * * * 4254 * * * * * 10 0 * * * * * * 2842 0 0 Q 11 * * * * * * * * * * * * * 0 * * * * * * 11 0 * * * * * * 2842 0 0 Y 12 * 6612 * * 2566 * * 4933 * 4020 * * * 4556 * * * * * 548 12 0 * * * * * * 2842 0 0 H 13 7074 * 4507 4254 6660 * 1564 * 3609 * * 2370 6656 3435 5205 3342 * 5360 * 5614 13 0 * * * * * * 2842 0 0 R 14 2385 4716 * * * 2105 * * * * * 4556 * * 1187 * * * 5404 4933 14 0 * * * * * * 2842 0 0 I 15 * * * * * * * 131 * 4556 4498 * * * * * * * * * 15 63 4556 * 4248 78 * * 2842 1000 0 L 16 * * * * * * * 2585 4150 934 2654 * * 4716 * * * 4137 * * 16 40 5183 * 1000 1000 * * 2842 1000 0 K 17 * * * * * * * 3870 1220 * * * * * 993 * * * * * 17 0 * * * * * * 2842 0 0 R 18 * * * * * * * * * 3836 4498 * * * 175 * * * * * 18 0 * * * * * * 2842 0 0 R 19 5183 * * 3732 * * * * 4020 * * * * * 259 * * * * * 19 0 * * * * * * 2842 0 0 Q 20 2997 * * 2658 * * 6612 4498 3476 5606 5233 5063 * 1547 4385 * * 3567 * 5614 20 0 * * * * * * 2842 0 0 A 21 1502 * * 5063 * * 5355 6416 3271 4142 3770 * * 4946 2682 3328 4673 6999 * 6308 21 0 * * * * * * 2842 0 0 R 22 * * * * * * * * 5183 * * * * * 40 * * * * * 22 0 * * * * * * 2842 0 0 A 23 659 * 5404 4303 * * * * 4167 * * * * 3088 4122 5712 4556 * * * 23 0 * * * * * * 2842 0 0 K 24 3163 * * 6024 * * * 4167 868 * 5404 * * 5938 2654 * * * * 3821 24 86 6012 4556 2000 415 * * 2842 1000 0 L 25 2082 * * * 6544 * * 5511 6008 913 4234 * * 5257 4349 * * 4155 * * 25 0 * * * * 0 * 2781 0 1000 E 26 4713 * 2698 669 * 4167 * * * * * 4507 * 3658 * * * * * * 26 0 * * * * * * 2842 0 0 A 27 1794 * 3967 2897 5063 * * * * 3193 6024 * * 3656 4735 2656 3931 5817 * * 27 177 4498 3812 0 * * * 2842 1000 0 E 28 * * 4620 1763 4116 * * * 4028 6697 6757 6556 * 2021 3893 3387 3371 6588 * * 28 113 4957 4534 3458 138 * 0 2759 1242 1600 G 29 6363 * 3857 * * 2626 4904 * 3070 3352 4887 1943 * * 2929 4631 5308 * * 6003 29 22 6071 * 5524 32 421 1982 2678 1000 1789 K 30 * * * 6529 * 6074 * 5043 1310 3550 * 5342 * * 1736 6142 4483 3804 * * 30 42 5119 * 3364 147 0 * 2793 1275 1000 I 31 4331 * 6321 * * * * 2615 * 1584 3258 5007 3869 * * 3769 * 2612 * * 31 38 5265 * 0 * * * 2842 1059 0 P 32 2694 6599 4556 6321 * 4507 * 2892 * 4378 * 5449 2585 5673 5531 2687 5495 2785 * * 32 14 6653 * 0 * * * 2842 1000 0 K 33 3857 * 6321 4360 * 3854 * * 1118 4352 * * 4498 * 3112 5063 4935 3871 * * 33 18 6308 * 2000 415 * * 2842 1000 0 E 34 3216 6012 5512 2724 * 3508 4716 3967 4933 6024 * 3424 * 3121 * 2882 4586 3639 * * 34 75 4300 * 2387 306 * * 2842 1411 0 R 35 6227 * 5007 * * * * * 2882 * * 3531 * * 513 4933 * * * * 35 76 4294 * 4389 71 * * 2842 1228 0 R 36 4507 6709 * 4933 * * * * 653 * * 4716 6015 2652 3943 * * * * * 36 0 * * * * * * 2842 0 0 K 37 4331 * * * * 4926 * * 1775 * * 4013 1070 * 4166 5003 * * * * 37 65 * 4505 * * * * 2844 0 0 Y 38 * * * * 5034 * * 4093 * * * * * * * * * * * 135 38 0 * * * * * 0 2768 0 1000 L 39 * * * * * * * 4410 3205 466 3713 * * 6542 * * 4899 * * * 39 0 * * * * 0 * 2768 0 1000 H 40 * * * * * * 374 * * * * * * * * * * 4166 * 2535 40 0 * * * * * * 2844 0 0 E 41 * * 6093 203 * * 5012 * * * * 5003 4505 * 6548 * * * * * 41 0 * * * * * * 2844 0 0 S 42 4166 * * * * * * * * * * * * * * 83 * * * * 42 0 * * * * * * 2844 0 0 R 43 * * * * * * * * * * * * * * 0 * * * * * 43 0 * * * * * * 2844 0 0 H 44 * * * * * * 184 * * * * * * 4166 5654 4505 * * * * 44 0 * * * * * * 2844 0 0 R 45 4505 * * 5003 * * 7015 * 1729 2133 * 4317 * 2786 2440 * * 6962 * * 45 0 * * * * * * 2844 0 0 H 46 * * * * * * 131 * * * * * * 4166 * * * * 5003 * 46 0 * * * * * * 2844 0 0 A 47 0 * * * * * * * * * * * * * * * * * * * 47 0 * * * * * * 2844 0 0 M 48 * 5275 * * * * * 5012 2933 1827 1151 * * 6961 * * 4496 5169 * * 48 0 * * * * * * 2844 0 0 A 49 7005 * * * * * * * 2030 4166 6837 2157 * 4711 1412 4892 6503 * * * 49 0 * * * * * * 2844 0 0 R 50 * * * * * * * * * * * * * * 0 * * * * * 50 0 * * * * * * 2844 0 0 K 51 2082 * * 4097 * * 4166 3291 3597 4141 * 6837 2042 4624 5102 * * 3524 * * 51 0 * * * * * * 2844 0 0 R 52 5653 * * * * * * * * * * * * * 29 * * * * * 52 29 * 5654 * * * * 2844 0 0 G 53 3190 * 4490 * * 388 * * * 5210 * * * * 5623 4851 * * * * 53 0 * * * * 0 * 2830 0 1000 E 54 4102 4115 * 3468 * * * 6270 3197 5930 * 4260 1855 5823 6646 2231 3538 * * * 54 0 * * * * * * 2844 0 0 G 55 * * 3374 * * 534 * * 4496 * * 4210 * * * 3708 4711 * * * 55 0 * * * * * * 2844 0 0 G 56 * * * * * 0 * * * * * * * * * * * * * * 56 0 * * * * * * 2844 0 0 R 57 * * * * * * * * 3355 * * * * * 148 * * * * * 57 0 * * * * * * 2844 0 0 F 58 * * * * 124 * * * * * * * * * * * * * * 3604 58 0 * * * * * * 2844 0 0 F 59 * 4939 4748 * 5711 * 5037 3122 * 471 * 5718 * * * * * 5311 * * 59 0 * * * * * * 2810 0 0 S 60 * * * * * * * * 3951 * * 1617 * * * 2179 1364 * * * 60 0 * * * * * * 2743 0 0 P 61 2306 * * * * * * 6541 1143 * * * 5771 * * 4675 1854 * * * 61 0 * * * * * * 2560 0 0 K 62 * * * * * * * * 346 * * * * 2657 4192 * * * * * 62 0 * * 0 * * * 2256 0 0 //