HHsearch 1.5 NAME c3zqnD_ FAM FILE c3zqnD_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3zqnD_.a3m DATE Thu Jan 10 03:45:41 2013 LENG 70 match states, 70 columns in multiple alignment FILT 35 out of 39 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.0 EVD 0.4448 1.1445 SEQ >ss_dssp CCCCCCHHHHHHCSSCCCCHHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEECCHHHHHHHHHHHHHC >sa_dssp EEEEEDDEECEEDEEEDDBEECDDDDCDDCCEDECEDEDEDEEDEEDEDECEDEBDDEDCEDAEDDCEEE >ss_pred CCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHEEEECCCCCCCEEEEECCCCHHHHHHHHHHHHCC >ss_conf 9313899999996501469999999999985460101365037876303552289988999999985129 >Consensus xxaxIdermxelxxxkIaxxxEVLexLTsvmRGExxexvxxxxgxgxxxxxxxxpxxkdRxkAxelLgKx >c3zqnD_ HXARIDARLKEINEKKILQANEVLEHLTRIALGQEKEQVLXGIGKGAETKTHVEVSAKDRIKALELLGKA >UniRef50_B0N8K3(51-116:141) Putative uncharacterized protein n=2 Tax=Erysipelotrichaceae RepID=B0N8K3_9FIRM E=7e-10 s/c=0.98 id=33% cov=94% ----IQQRLDEIASKRVAKQQEVMEYLTSVMRGESTSSVLAMCGDGMQEVIEKPPDEKESLRAAELLGR- >UniRef50_Q56SA4(35-102:150) Terminase small subunit n=4 Tax=unclassified Siphoviridae RepID=Q56SA4_9CAUD E=6e-10 s/c=0.96 id=35% cov=97% --AYIEERLKELEKKKIAKQDEVMQVFTSILRQELVEEVVeLNAATGQFVKTKKTPSISEVIKAGSELMK- >UniRef50_D0DH24(67-127:190) Terminase small subunit n=1 Tax=Lactobacillus crispatus MV-3A-US RepID=D0DH24_9LACO E=3e-09 s/c=1.03 id=33% cov=87% ----INKRMKQIDEAKIPKQKEVLEFLGGVMRG-----TLKITVETDDGVEEIPPNWKNRIDAAKELLK- >UniRef50_C2EWE2(46-113:173) Phage terminase small subunit n=1 Tax=Lactobacillus vaginalis ATCC 49540 RepID=C2EWE2_9LACO E=6e-09 s/c=0.91 id=35% cov=89% --AYINAKMGEIESHKIADAREAMQAITSIARGETTEtQAQINPLSGQWEKTEVPANLKTRLAA------- >UniRef50_B8DB85(50-114:180) Phage terminase, small subunit n=8 Tax=root RepID=B8DB85_LISMH E=3e-08 s/c=0.92 id=31% cov=93% ----IDKVLSELEEKRVMGYTEAMQLFTEIARGEMEEEVIVSNGDGFSVVT-KSADINQRVSALKEIVK- >UniRef50_Q02WT7(50-114:170) Phage terminase, small subunit n=7 Tax=root RepID=Q02WT7_LACLS E=2e-07 s/c=0.88 id=35% cov=61% ----IDERMEQLASERIMSAQEILERLSLIANAKIKETVVVANAEG------------------------ >UniRef50_C3F7N4(92-149:203) Terminase small subunit n=1 Tax=Bacillus thuringiensis serovar monterrey BGSC 4AJ1 RepID=C3F7N4_BACTU E=1e-10 s/c=1.16 id=39% cov=84% --------MNQRNFHKVMGYQEVLEFATSVVRGEIKDTTL--NMKTGEAFTH-EPLVKDRFKYLETLMK- >UniRef50_A6TZZ2(81-163:189) Terminase small subunit n=14 Tax=root RepID=A6TZZ2_STAA2 E=3e-05 s/c=0.60 id=29% cov=94% ----IKEVETKLFDENIMSGKEVLYRLTRTARGEHTEVEAVVTKTGDYKenpdtgkmqlvydehiqLVTKSPKISDQNKALEMLGR- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * H 1 * * * * * * 0 * * * * * * * * * * * * * 1 0 * * * * * * 1450 0 0 X 2 * * * * * * * 0 * * * * * * * * * * * * 2 0 * * * * * * 1000 0 0 A 3 143 * * * * * * * * * * * 3401 * * * * * * * 3 0 * * * * * * 3058 0 0 R 4 2808 * * 4088 * * * * * * * * 3401 * 2914 * * * * 808 4 0 * * * * * * 3058 0 0 I 5 * * * * * * * 51 * * * * * * * * * 4846 * * 5 0 * * * * * * 4146 0 0 D 6 3858 * 1145 2853 * * * 4846 2941 * * 3031 * 4233 * * * * * * 6 0 * * * * * * 4146 0 0 A 7 2641 * * 1038 * * * * 2851 * * 3726 4685 4994 * 3872 * * * * 7 0 * * * * * * 4146 0 0 R 8 * * * * * * * 4685 1981 * * * * 4043 819 * * 3642 * * 8 0 * * * * * * 4146 0 0 L 9 * * * 4727 * * * 5352 * 1320 1240 4592 * * * * 5149 4497 * * 9 0 * * * * * * 4209 0 0 K 10 2664 * 5035 2243 * 4744 * * 1695 * * 3878 * 4623 * 3213 4727 * * * 10 0 * * * * * * 4209 0 0 E 11 3942 * 3962 1096 * * * * 3389 * * 4894 * 2307 4899 4710 * * * * 11 0 * * * * * * 4209 0 0 I 12 4894 * * * * * * 1971 5434 1013 3143 * * * 4522 * * 4805 * * 12 0 * * * * * * 4209 0 0 N 13 4271 * 2501 1758 4727 * * * 3517 * * 4007 * 2795 4497 3909 * * * 4894 13 0 * * * * * * 4209 0 0 E 14 3729 * 2638 2674 4522 * * * 3311 * * 3538 * * * 1408 * * * * 14 65 4497 * 2000 415 * * 4209 1000 0 K 15 4729 * 3816 1433 * * 2854 * 1822 * * 5162 * 4389 * * 5367 * * * 15 54 4754 * 1585 585 * * 4210 1000 0 K 16 5162 * * * * * * * 1300 * * 3699 * 5509 1522 3560 4877 * * * 16 49 4912 * 2322 322 * * 4210 1000 0 I 17 * * * * * * * 521 * * 4741 * * * * * 3701 2404 * * 17 0 * * * * * * 4239 0 0 L 18 694 * * * * * * * * 4041 1817 * 4745 * * * * * * * 18 0 * * * * * * 4239 0 0 Q 19 * * 2043 4890 * 3677 * * 2689 * * * * 3091 * 2398 2448 * * * 19 0 * * * * * * 4239 0 0 A 20 1413 * * * * 2788 * 3994 * * 4629 * * 1919 * 4890 * * * 3677 20 0 * * * * * * 4239 0 0 N 21 4932 * 3323 2626 * * * * 1940 * * 4236 * 2256 4809 * 2772 * * * 21 0 * * * * * * 4239 0 0 E 22 * * * 129 * * * * * * * * * 3547 * * * * * * 22 0 * * * * * * 4239 0 0 V 23 3799 * * * * * * 3328 * * * * * * * * 5181 320 * * 23 0 * * * * * * 4239 0 0 L 24 4814 * * 4545 * * * * * 627 1867 * * * * * * * * * 24 0 * * * * * * 4239 0 0 E 25 5181 * * 897 * * * * 4932 * * * * 2037 * 5673 * 4550 * 3372 25 0 * * * * * * 4239 0 0 H 26 4809 * * 3657 2595 * 4851 5181 * 4789 4550 * * * 3188 * 5250 4948 * 1286 26 0 * * * * * * 4239 0 0 L 27 4572 * * * 3303 * * 4809 * 438 5250 * * * * * * * * 4140 27 0 * * * * * * 4239 0 0 T 28 * * * * * 4745 * * * * * * * * * 3341 211 * * * 28 0 * * * * * * 4239 0 0 R 29 4890 * * 3664 * 4745 * * 3650 5614 * * * 5181 2015 1177 4932 * * * 29 0 * * * * * * 4239 0 0 I 30 5250 * * * 4814 * * 1695 * * * * * * * * 3199 942 * * 30 0 * * * * * * 4239 0 0 A 31 1564 * * * * * * * * 2411 1307 * * * * * * 3844 * * 31 0 * * * * * * 4239 0 0 L 32 * * 4814 * * * * * * 3690 * 5614 * * 280 4550 * * * * 32 0 * * * * * * 4239 0 0 G 33 4401 * 5067 * * 167 * * * * * * * 4948 * * * * * * 33 55 * 4745 * * * * 4239 0 0 Q 34 * * 4711 521 * * * * 4426 4493 * * * 3274 * 3822 * * * * 34 0 * * * * * 0 4191 0 1000 E 35 3109 * * 2788 * * 4023 2829 4141 4058 4724 * * 3735 * 3148 3116 3657 * * 35 0 * * * * * 0 4191 0 1000 K 36 * * * 4724 * * 4847 * 1716 * 4141 4493 * 5607 4749 * 1492 3204 * * 36 0 * * * * * 0 4191 0 1000 E 37 4711 * 2489 682 * 4784 * * 4141 * * * * * * 5047 * 4749 * * 37 56 4707 * 0 * * 0 4191 1000 1000 Q 38 * * * 2090 * 4141 * 5518 3201 * * * * 1736 * 3799 2535 4914 * * 38 0 * * * * 0 * 4191 0 1000 V 39 3983 * * 3322 5407 * * 3728 * * * * * 3673 4777 * 2587 1132 * * 39 34 * 5407 * * * * 4239 0 0 L 40 3729 * * * * * * 3346 * 1480 * * 4268 4749 * * * 1793 * 3473 40 225 3302 4530 739 1319 * 0 4223 2078 1000 X 41 3859 * 3829 4352 * 5402 * 2503 4616 4878 4231 5067 * * 4680 * 3732 1718 * 4808 41 0 * * * * * 0 4168 0 1431 G 42 3755 * * * 5443 2895 * 3564 3717 * 5028 2962 4191 * * 2728 3070 3011 * * 42 0 * * * * 795 1239 4157 0 1431 I 43 4933 5075 4708 2705 * * * 3034 4570 4912 * 2855 4749 * * 5213 1821 3981 * * 43 0 * * * * * 0 4223 0 1000 G 44 3556 * * 4165 * 970 * * 3352 4749 4530 3821 4910 * * * 5135 4716 * * 44 62 * 4570 * * * 0 4223 0 1000 K 45 * * 2208 3083 4816 5112 * 4568 2553 4679 4728 4584 * 5512 * 4709 2800 4517 * 5460 45 152 * 3321 * * * 0 4221 0 1448 G 46 4359 * * 4961 5495 518 * 4333 * 5367 * 4941 * * * * 3436 * * * 46 304 2704 4769 2623 255 2004 414 4083 2200 2369 A 47 2734 * 2111 2123 4385 2780 * * * * 4603 * * 3594 * 5515 * 4339 * * 47 191 3357 5242 3450 138 * 0 3985 1738 2364 E 48 3065 * 3570 1843 4592 * * * * * 5132 * 4166 2712 * 4337 * 3320 4513 4447 48 0 * * * * 1418 676 3986 0 2434 T 49 2795 * * 2641 * 3167 * 5020 4034 * * * * 4211 3412 * 3175 2096 * * 49 62 4565 * 4087 87 286 2474 3990 1000 2213 K 50 * * * 5111 3383 * * 3259 2736 2039 * * * * 3263 * * 1992 * 5521 50 86 5765 4662 0 * * 0 4087 1000 1000 T 51 * * * 2753 4639 4769 * 2111 * 5230 * * * * * 4005 1788 2602 * * 51 108 5068 4566 2807 222 1193 830 4027 1000 1394 H 52 * * 2310 1662 * 4308 3086 * 2908 * * 4680 * 4741 5399 * 3633 * * * 52 134 * 3496 * * 934 1069 3986 0 1592 V 53 4613 * * * * * * 2760 1288 4204 * * * 5020 5202 4899 * 2547 * 3555 53 0 * * * * 564 1628 3948 0 1983 E 54 4684 * 3619 1942 * * * * 3371 * * * 1592 * 5277 3649 3544 * * * 54 75 4297 * 1869 462 0 * 4049 1479 1000 V 55 3285 * * * * * * 4022 * * * * 888 * * 4413 4441 2304 * * 55 0 * * * * * * 4104 0 0 S 56 * * 2296 * * 3630 * * 3249 3604 * 3717 * 4883 * 1363 5082 * * * 56 0 * * * * * * 4104 0 0 A 57 2425 * * 3103 3866 * * 2091 * 4006 * 3645 4736 * * 5160 3280 4490 4675 * 57 0 * * * * * * 4104 0 0 K 58 4729 * * 4159 * 4764 * * 814 * * 3518 * 5302 4335 2852 * * * * 58 0 * * * * * * 4104 0 0 D 59 4413 * 988 1797 * * * * * * * 4675 * 4631 * 4486 4761 * * * 59 0 * * * * * * 4104 0 0 R 60 * * * * * * * * 3956 * * * * 3004 427 4894 * 4909 * * 60 0 * * * * * * 4104 0 0 I 61 * * * * 4490 * * 1736 * 1762 4816 3249 * * * * 2664 4013 * * 61 0 * * * * * * 4104 0 0 K 62 3788 * 4675 * * * * * 558 * * 4764 * * 3801 3839 5018 * * * 62 0 * * * * * * 4104 0 0 A 63 66 * * * * * * * * * * * * * * * * * * 4490 63 0 * * * * * * 4104 0 0 L 64 1096 * * * * 3172 * * * 1641 3868 * * * * 4957 * * * * 64 0 * * * * * * 4050 0 0 E 65 * * 4668 514 * * * 4736 2744 * * * * * 4723 4815 * * * * 65 0 * * * * * * 4050 0 0 L 66 * * * 2167 * * * * * 767 3231 * * 4736 * * 4447 * * * 66 0 * * * * * * 4050 0 0 L 67 * * * * * * * 3052 * 262 4448 * * * * * * * * * 67 0 * * * * * * 4050 0 0 G 68 3706 * * * * 630 * * * 3608 2751 * * * * * * 4425 * * 68 0 * * * * * * 4015 0 0 K 69 * * * * * * * * 111 * * * * * 3753 * * * * * 69 0 * * * * * * 4015 0 0 A 70 936 * * * * * * * * * * * * * * 1067 * * * * 70 0 * * 0 * * * 1413 0 0 //