HHsearch 1.5 NAME c3zf7V_ FAM FILE c3zf7V_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3zf7V_.a3m DATE Sat Feb 16 08:35:42 2013 LENG 103 match states, 103 columns in multiple alignment FILT 34 out of 38 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.4 EVD 0.4026 -0.3893 SEQ >ss_dssp CCCEEEEEECHHHHHTTTTTSCSSHHHHHHHHHCSCCCSSSSCCCCSCEEEECSSCEEEEESSCCCTHHHHHHHHHHHHHHTCCTTCEEEESSSSEEEEE CCC >sa_dssp EEDDCBCBCACDBAEEBCBEECEADCBBDDBDEECEDEDEEEEEDEEDDCECEEDCABCCBEDECEDECBEEBBEDBCEEDECEEECDCEDECEDCBCBD DDE >ss_pred CCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHEEECCCCCCCCCEEEEEEECCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHEEEEEEECCCEEEEE ECC >ss_conf 9707999982364556751710055799988765256671166577499998599899995531001778999999861631410345687268648987 409 >Consensus kxxkxfxiDctxPvxDxixdxxxxxxfekylxxxiKVxgkxgnLxxxVxvxxxxxkixVxsxxxfSKRYlKYLtKKyLKkxxlRdwlRVvaxxKdxYeLr yfN >c3zf7V_ KGKKVFKIDCSIPASDGIFSDDILSNFQQYFQDNVKLNGRKGKLTSKVRVNMRENTLSITTTMAYRKKYFKYLTKKFLKKKDLRDWIRILAKGKDTYQLK YFN >UniRef50_A0E0C9(19-113:122) Chromosome undetermined scaffold_71, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0E0C9_PARTE E=8e-15 s/c=0.86 id=40% cov=93% -----FIIDCAEPKEDKVLN---LDEFVSYLQSRIKVQGKTGNLGNDVTVSAEQEKVVVTSTIPFSKRYLRYLTKKYLKQETLREYLYVHSLDKSTYQLK YFN >UniRef50_B7G9C7(3-107:118) Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G9C7_PHATR E=3e-11 s/c=0.66 id=34% cov=97% KGKKSivkFVIDCTQPVDDKVLD---VAQFEKYLHDRLKIGGKTGQLATSGVVLSRDRtklTVASPAELGFSKRQLKYLSKRYLKKQQLKNYMRVVAASK NSYEMRYY- >UniRef50_A8BW84(60-157:171) Putative uncharacterized protein n=2 Tax=Giardia intestinalis RepID=A8BW84_GIALA E=5e-06 s/c=0.53 id=37% cov=95% QGNIRFAVDCSA----GKDLELNLNEFADYVRTHFKINNRKHGVAEKVACSVEGDSLVIQTTgYEFAKRYVKYLTKRFL-YQDYQGVFRVLSTDKETYTL KPY- >UniRef50_C4QK85(17-119:131) 60S ribosomal protein L22, putative n=2 Tax=Schistosoma RepID=C4QK85_SCHMA E=3e-24 s/c=1.09 id=38% cov=99% --KKKQVLKFSICISPGVMDEDIVSPslLEKYLKEHIKVNKKLNNLGKDVHVERDKSTIHVTANIPFSKRYLKYLTKKFLKRHKLRDFLRVVAKSKDSYE FRFFN >UniRef50_A2DNV5(2-101:106) 60S ribosomal protein L22-1, putative n=2 Tax=Trichomonas vaginalis RepID=A2DNV5_TRIVA E=1e-21 s/c=1.03 id=35% cov=93% ----VFYVDCSAPVADKFFQ---LQEFVEYLQSHMKVDNLRKNLANKVTIEADagANKIVVNASVKYSKRAVRYYARKFLAKKDIRSRFHVIASGKDTYE LRPY- >UniRef50_Q8SS49(7-105:112) 60S ribosomal protein L22 n=2 Tax=Apansporoblastina RepID=RL22_ENCCU E=3e-18 s/c=0.94 id=36% cov=95% KTTRRFTIDCTKPASDSLISP---SDLGAFLQQKIKCyTGKKEKL---LHINANGNIVEVDVTGGFiGKQGLKWQIGRFLHMKKLRAFIKIFAQGLDGFE LRYIN >UniRef50_Q7RGU9(40-106:118) Ribosomal protein L22-related n=1 Tax=Plasmodium yoelii yoelii RepID=Q7RGU9_PLAYO E=2e-10 s/c=1.00 id=29% cov=66% -----YVLDCTKPVKDTILD---ISGLEQFFKDKIKVDNKTNNLKNKIVVSSDDYKIYITVHVPFSKRYIKVLEK------------------------- --- >UniRef50_B0EA57(31-122:137) 60S ribosomal protein L22, putative n=2 Tax=Entamoeba RepID=B0EA57_ENTDI E=1e-05 s/c=0.56 id=30% cov=90% ------TIDLTNCT-----DFIEPKKLVTFFRQTIKVQGRAGNTKGIEVKVADKKVTITTSSAKLCKRYMKYLMKKYLKKNNLREWLRVVSDKKDGFELK FFN >UniRef50_C4R6P3(21-117:129) Protein component of the large (60S) ribosomal subunit n=3 Tax=Saccharomycetaceae RepID=C4R6P3_PICPG E=4e-26 s/c=1.22 id=34% cov=94% ---KTFTVDASAPTEQGVFDP---ASYAKYLIDHIKVGGHIGNLGSDITVTQEGNKIIVVSNTKFSGKYLKYLSKRYLKKNQIRDWIRFISIRKNEYRLQ FY- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * K 1 * * * * * * * * 237 * * * * 2722 * * * * * * 1 0 * * * * * * 2819 0 0 G 2 3166 * * * * 962 * * 3168 * * * * * * * 2653 3251 * * 2 0 * * * * * * 2819 0 0 K 3 * * * * * * * * 1034 * * 2940 * * * * 2282 3558 3459 * 3 0 * * * * * * 2954 0 0 K 4 * * * * * * * 3102 877 * * * * 3709 3017 3874 * 3820 * * 4 81 4191 * 1585 585 * * 3106 1000 0 V 5 * * * * * * * * 2181 * * * * * 1892 4157 2031 2256 * * 5 83 4157 * 1585 585 * * 3176 1000 0 F 6 * * * * 363 * * * * 4528 * * * 4560 * * * * * 2871 6 0 * * * * * * 3314 0 0 K 7 3956 * * * * * 4916 3569 3863 * * 5507 * * * * 1574 1703 * 3565 7 0 * * * * * * 3426 0 0 I 8 * * * * * * * 1025 * 2930 * * * * * * * 1406 * * 8 0 * * * * * * 3426 0 0 D 9 * * 87 * * * * * 4707 * * 5641 * * * * * * * * 9 0 * * * * * * 3463 0 0 C 10 3544 454 * * 4707 * * * * 3716 * * * * * * * 3839 * * 10 0 * * * * * * 3463 0 0 S 11 2648 * * * * * 4955 * * * * * * 5175 * 1474 1249 * * * 11 0 * * * * * * 3463 0 0 I 12 2046 4923 * 4776 * * 3912 2915 2037 * * 3690 * 3236 * 4932 * 5095 * * 12 90 * 4042 * * * * 3482 0 0 P 13 5548 3417 * * * * * 5226 * * * * 281 * * * * 4830 * * 13 0 * * * * * 0 3338 0 1000 A 14 2162 * * * * * * 4689 4688 * 5388 * * * * * 3031 855 * * 14 81 * 4187 * * * 0 3338 0 1000 S 15 3349 * 2978 1287 * 5470 * * 4272 * * 3696 * 4062 * 2702 * * * * 15 33 * 5470 * * * 0 3233 0 1676 D 16 * * 240 * * * * * * * * 3728 4566 4803 * * * * * * 16 0 * * * * 598 1559 3241 0 2015 G 17 * * 4767 * * 1504 * * 1766 * 4849 3636 * * * 2957 3781 * * * 17 50 * 4885 * * * 0 3382 0 1000 I 18 * * * * 4201 * * 916 3893 3774 * * * * * * * 1861 * * 18 0 * * * * * 0 3358 0 1510 F 19 * * 3893 * 1596 * * 2979 * 2067 2217 * * * * * * 5544 * * 19 0 * * * * 0 * 3358 0 1510 S 20 * * 719 3615 * * 5024 * * 4042 * 4776 * 4271 * 2929 * * * * 20 1100 * 906 * * * * 3482 0 0 D 21 * * 3857 1832 3375 * 3666 * * * * * 1951 3758 * 4119 3561 * * * 21 548 * 1661 * * * 0 3198 0 2727 D 22 * * 1158 2871 * 3038 * 2870 * 2676 * * * * * * * * * * 22 430 * 1957 * * * 0 2926 0 3056 I 23 * * * 2456 * * * 1703 * * * 2333 * * * * 2515 2866 * * 23 0 * * * * 517 1730 2626 0 3135 L 24 3520 * * * * * * 2707 * 1362 * * 3860 * * 4656 * 1931 * * 24 0 * * * * 596 1564 3184 0 2428 S 25 1416 * 3809 * * 3708 * * 3559 * * 3964 4906 4184 * 2059 * * * * 25 0 * * * * 0 * 3418 0 1616 N 26 3482 * 2990 2747 * 3359 4013 * 4269 * * 2939 4743 4278 * 2451 5498 * * * 26 55 4743 * 1000 1000 * * 3482 1000 0 F 27 * * * * 826 * * * * 1708 * * * * * * * * 5024 3336 27 0 * * * * * * 3482 0 0 Q 28 3435 * * 955 * 3894 * * 4838 * * * * 4946 * 4932 5736 2517 * 5024 28 0 * * * * * * 3482 0 0 Q 29 3543 * 4040 3891 * * * * 1123 * * * * 2230 5269 4788 4275 * * * 29 0 * * * * * * 3501 0 0 Y 30 * * * * 1052 * * * * * * * * * * * * * * 950 30 0 * * * * * * 3501 0 0 F 31 * * * * 2316 * * 4153 * 552 * * * * * * * 4040 * * 31 0 * * * * * * 3501 0 0 Q 32 * * * * * * 2832 3619 2844 5940 * * * 1427 2611 * 4251 4859 * * 32 0 * * * * * * 3501 0 0 D 33 5307 * 1390 1994 * * * * * * * 5940 * 3070 * 3518 3066 * * * 33 0 * * * * * * 3501 0 0 N 34 * * * * * * 1730 * 2326 * * 3970 * * 1382 * 4275 * * * 34 0 * * * * * * 3501 0 0 V 35 * * * * 3446 * * 783 * 3710 3552 * * * * * 4989 2900 * * 35 0 * * * * * * 3501 0 0 K 36 * * * * * * * * 0 * * * * * * * * * * * 36 0 * * * * * * 3501 0 0 L 37 * 3890 * * * * 5227 2483 * 3970 * * * * * * * 592 * * 37 171 3164 * 0 * * * 3501 1626 0 N 38 * * 1690 4857 * 2633 * * 4934 * * 1814 * 3509 5514 * 3890 * * * 38 0 * * * * * * 3501 0 0 G 39 * * * * * 407 * * 3999 * * 2449 * * * * * * * * 39 0 * * * * * * 3501 0 0 R 40 5060 * * * * * 4981 4859 603 4291 * * * * 2362 * * * * * 40 0 * * * * * * 3501 0 0 K 41 2429 4368 * * * * * 4981 2380 3890 * * 3807 * 4291 * 2156 2969 * * 41 0 * * * * * * 3501 0 0 G 42 5227 * * 3890 * 750 3397 * 4291 * * 2597 * * * * * * * * 42 0 * * * * * * 3501 0 0 K 43 3523 * * * * 4040 * * 2929 5227 * 839 * 2888 * * * * * * 43 0 * * * * * * 3501 0 0 L 44 * * * * 5024 * * * * 269 * * * * * * 4275 3515 * * 44 101 * 3890 * * * * 3501 0 0 T 45 2495 * * * * 969 * * 2242 * * * * * * 3959 4791 * * * 45 0 * * * * * 0 3354 0 1000 S 46 * * 1918 3121 * 3727 5090 * 4771 * * 1790 * * * 3172 3667 * * * 46 43 5090 * 3459 138 * 0 3354 1000 1000 K 47 3560 * 2789 * * 5676 * 4159 1731 * * 5189 5090 3812 4475 2748 5587 4291 * * 47 36 5343 * 0 * 0 * 3354 1000 1000 V 48 * * * 4275 * 5136 * 2864 * 3409 * * * * * * * 539 * * 48 0 * * * * * * 3501 0 0 R 49 3482 * * 4375 * * 3030 * * * * * * 4368 3399 3302 1981 2047 * * 49 0 * * * * * * 3501 0 0 V 50 * 4040 * * 3491 * * 1804 4275 3628 * * * * * * 5734 1278 * * 50 0 * * * * * * 3501 0 0 N 51 5940 * * 2390 * * 5014 5734 4871 5136 * 3325 * 5122 * 1700 2377 4275 * * 51 0 * * * * * * 3501 0 0 M 52 2054 * * 3592 * * * * 3384 * 3970 * * 4326 1678 3421 * 4040 * * 52 0 * * * * * * 3501 0 0 R 53 * * 1578 2074 5626 * 5227 * 5014 * * 3337 * 5475 3652 4073 3895 * * 5514 53 129 3547 * 1269 774 * * 3501 1547 0 E 54 4291 * 3668 4055 * 1704 * * 1425 5014 * 5514 * 4788 5461 5734 * * * * 54 53 4794 * 0 * * * 3501 1312 0 N 55 3817 * 3662 4788 * 4494 * * 3827 5307 * 1747 * 4871 5136 2727 3624 4859 * 4424 55 119 3655 * 725 1340 * * 3501 1789 0 T 56 * * * * * * * 3360 1009 * * * * * 3641 3155 3389 3088 * * 56 27 5734 * 0 * * * 3501 1000 0 L 57 * * * * * * * 1449 * 1751 * * * * * * 4275 1811 * * 57 0 * * * * * * 3501 0 0 S 58 4375 * * 3061 5269 * 4848 2382 * * * 5514 * * * 4951 2184 2136 * 3689 58 0 * * * * * * 3501 0 0 I 59 * * * * * * * 2160 * 4173 * * * * * 5136 4275 642 * * 59 33 5461 * 1000 1000 * * 3501 1000 0 T 60 * * 3890 * 5014 * 4073 5661 * 5475 * 2977 4289 4040 * 3036 1561 3321 * * 60 0 * * * * * * 3501 0 0 T 61 2014 5965 * * * 4859 * * * * * * * * * 1342 2369 3132 * * 61 0 * * * * * * 3501 0 0 T 62 * * 4194 2027 * 4934 3564 * * * * 3026 * 5122 * 2449 2011 * * * 62 90 4040 * 0 * * * 3501 1000 0 M 63 3352 * * * * 2776 * 2188 5626 3698 3970 * * * * 4722 4981 2029 * 4040 63 0 * * * * * * 3501 0 0 A 64 3606 * 5661 4040 * 3076 4108 * 2356 * * 5514 1424 5626 * 4308 * * * * 64 0 * * * * * * 3501 0 0 Y 65 * * * * 459 * * * * 3542 4615 * * * * * 5014 * * 3121 65 101 3890 * 0 * * * 3501 1000 0 R 66 4040 4275 * * * 3890 * * * * * * * * 3970 403 * * * * 66 0 * * * * * * 3501 0 0 K 67 * * * * * 2899 * * 208 * * * * * * * * * * * 67 0 * * * * * * 3501 0 0 K 68 5307 * * * * * * * 2645 * * * * 3890 420 * * * * * 68 0 * * * * * * 3501 0 0 Y 69 4291 * * * * 3890 * * * * * * * 4289 * * * * * 268 69 0 * * * * * * 3501 0 0 F 70 * * * * 3373 * * 3228 * 702 3836 * * * * * * 3160 * * 70 0 * * * * * * 3501 0 0 K 71 * * * * * * * * 132 * * * * * 3518 * * * * * 71 0 * * * * * * 3501 0 0 Y 72 * * * * * * * * * * * * * * * * * 5737 3890 130 72 0 * * * * * * 3501 0 0 L 73 * * * * * * * * * 182 * * * 3890 * * * * * 4291 73 0 * * * * * * 3501 0 0 T 74 3663 * * 5737 * * * 3890 * * 4275 * * * * 3594 514 * * * 74 0 * * * * * * 3501 0 0 K 75 * * * * * 3890 * * 182 * * * * * 4291 * * * * * 75 0 * * * * * * 3501 0 0 K 76 * * * * * * * * 412 * * * * * 2008 * * * * * 76 0 * * * * * * 3500 0 0 F 77 * * * * 1549 * 5111 * * * * * * * * * * * * 668 77 0 * * * * * * 3500 0 0 L 78 * * * * * * * 4998 * 46 * * * * * * * * * * 78 91 * 4032 * * * * 3500 0 0 K 79 4084 * * * * * 3779 * 325 * * * * * * 4759 4924 * * * 79 0 * * * * 0 * 3354 0 1000 K 80 * * * * 5622 4849 * * 548 * 3303 * * 4779 4008 * * * * 4032 80 0 * * * * * * 3500 0 0 K 81 * * * 4779 * * 2338 * 2275 * 4849 1885 * 2337 * * * 4906 * 5475 81 0 * * * * * * 3500 0 0 D 82 * * 2495 * * * * * 3247 5918 5238 2176 * 2045 4849 2842 4779 * * * 82 0 * * * * * * 3500 0 0 L 83 * * * * 5111 * * 2373 * 650 * * * * * * * 3650 * 4032 83 0 * * * * * * 3500 0 0 R 84 * * * 5111 * * * * 4262 * * * * 4032 221 * * * * * 84 0 * * * * * * 3500 0 0 D 85 3836 * 707 3494 * 4032 * * * * * 3111 * * * 4275 * * * * 85 0 * * * * * * 3500 0 0 W 86 * * * * 1989 * * * * * * * * * 4275 * * 4032 871 3497 86 0 * * * * * * 3500 0 0 I 87 * * * * 3148 * * 1959 * 953 3669 * * * * * * 4849 * * 87 0 * * * * * * 3500 0 0 R 88 * * * * * * 3588 * 3836 * * * * * 303 * * * * 4779 88 0 * * * * * * 3500 0 0 I 89 * * * * 3366 * * 2893 * * * * * * * * * 380 * * 89 0 * * * * * * 3500 0 0 L 90 * * * * 3836 * 4779 2204 * 2640 * * * * * * * 955 * * 90 0 * * * * * * 3500 0 0 A 91 694 * * * * * * * * * * * * * * 1389 * * * * 91 0 * * * * * * 3506 0 0 K 92 4236 * 4248 * 5005 * * 3947 2561 4768 * 4461 * 3826 * 2203 2161 4821 * * 92 47 4974 * 0 * * * 3506 1000 0 G 93 4889 * 3061 5271 * 2017 * * 3193 * * 2708 * * 3448 2334 5575 * * * 93 0 * * * * * * 3506 0 0 K 94 * * 5222 * * * * * 315 3826 * * * 3340 * * * * * * 94 28 5715 * 1000 1000 * * 3506 1000 0 D 95 * * 1162 3284 * 3694 * * * 4974 * 2245 * * 4974 4768 4011 * * * 95 128 3562 * 1000 1000 * * 3506 1316 0 T 96 3639 * * 4909 * 3022 * * * * * * * 3901 * 2173 1559 2887 * * 96 0 * * * * * * 3506 0 0 Y 97 * * * * 2672 * * * * * * * * * * * * * * 246 97 0 * * * * * * 3506 0 0 Q 98 4889 * * 573 * * * * 3901 * * * * 3288 4909 5072 4013 * * * 98 0 * * * * * * 3506 0 0 L 99 * * * * 3854 * * 4826 * 391 3526 * * * * * * 4433 * * 99 0 * * * * * * 3506 0 0 K 100 * 4826 * * * * * * 1844 * * * * 3864 857 * 4889 4985 * * 100 0 * * * * * * 3506 0 0 Y 101 * * * * 2394 * * * * * * * 3134 * * * * * * 523 101 0 * * * * * * 3506 0 0 F 102 * * * * 715 * * 3826 * * * * * * * * * * * 1642 102 0 * * * * * * 3506 0 0 N 103 * * * * * * * * * * * 0 * * * * * * * * 103 0 * * 0 * * * 2886 0 0 //