HHsearch 1.5 NAME c3zeyW_ FAM FILE c3zeyW_ COM /bmm/www/servers/phyre2/HH/hhmake -i c3zeyW_.a3m DATE Sat Feb 16 08:32:34 2013 LENG 82 match states, 82 columns in multiple alignment FILT 29 out of 33 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 3.2 EVD 0.4059 -0.1750 SEQ >ss_dssp CCCSSCSSCCCTTTTTTCCGGGSSSCCCSSCEEEEECTTSSCEEEEESSCSSCCEETTTTEECEECCSSSCEECTTCEEECC >sa_dssp EEEEEDEDEDEEECEEDDEEEEDEEDDEECDEBCBDBEECEEECEBDBDCEDDCDBEDDEEDBBDDCEDEBDCDEEBCDEEE >ss_pred CCCCHHHHCCCHHHHHHHHHHHHEEECCCEEEEEEECCCCCCCEEEEECCCCEEEECCCCCEEEEECCCCEEEECCCEEEEC >ss_conf 9410011088889998643432120069703799980898770179726764899456674345425861685158615419 >Consensus xxxxxDllxpxxxxexxkhKxkrLvxxPnSxFmxVkCxxCxnixvvFShAxtxVxCxxCgxxLxxPTGGKaklxxxcxfrxk >c3zeyW_ GFFDSDLSYPTVRTERMKHKRRRLVQGPNSYFMDVKCPGCKNITVVYSHATSEVKCNGCATLLCRPTGGKAMLVTGCGFRKK >UniRef50_P38654(3-83:84) 40S ribosomal protein S27 n=7 Tax=Entamoeba RepID=RS27_ENTHI E=6e-24 s/c=1.37 id=44% cov=100% -LIEVDLLNPTAASEAKAHKMKRLVPTPNSYFLEIKCPKCGATTTTFSHAHRQILCQKCGQPLGQPTGGKLKLTQQCKFRIK >UniRef50_A2DB88(4-83:86) Ribosomal protein S27 n=4 Tax=Trichomonas vaginalis RepID=A2DB88_TRIVA E=3e-22 s/c=1.32 id=37% cov=96% --LDVDILHPTVEQEAHTNKKMTLVPNPRSEFLSLRCPSCTGLTTAFSHSNVPVFCKNCQTPLATPTGGRILLADQVEIR-- >UniRef50_Q6QI38(204-254:496) LRRGT00170 n=2 Tax=Rattus norvegicus RepID=Q6QI38_RAT E=7e-12 s/c=1.40 id=46% cov=63% ----------------RKHKKKHLVQSPSSYFMDVKYLGCYKVPNIFSQEHTVVLYDGCSTVFCQPT--------------- >UniRef50_C5A6X9(5-56:65) 30S ribosomal protein S27e n=29 Tax=Archaea RepID=RS27_THEGJ E=8e-07 s/c=1.05 id=40% cov=65% ---------------------KNLIPMPRSRFLRVKCIDCGNEQIVFSHPATKVRCLVCGATLVEPTGGKGVI--------- >UniRef50_Q8SS34(1-79:85) 40S RIBOSOMAL PROTEIN S27 n=1 Tax=Encephalitozoon cuniculi RepID=Q8SS34_ENCCU E=5e-21 s/c=1.28 id=36% cov=95% ----SDLAFPTREKVGSTYKKDRLYREGNGFFMYVRCGGCRHTTCCYSHSQTNISCPGCGDIILTSSGGRAVVSPNCEFKK- >UniRef50_Q3LW62(9-85:93) Ribosomal protein S27 n=1 Tax=Bigelowiella natans RepID=Q3LW62_BIGNA E=9e-21 s/c=1.31 id=45% cov=87% -----DLSNPSKKTEAKKHKLKRLIQSPNSHYIATKCLKCKKINIIFSHSVFWKTCVDCSTLLTRPSGGKFKSSK------- >UniRef50_Q9AW40(12-80:81) 40S ribosomal protein S27 n=1 Tax=Guillardia theta RepID=Q9AW40_GUITH E=2e-20 s/c=1.45 id=46% cov=85% ------------ELEKMKHKKKRIIPNPNSYFINIICKNCKNKNIIFSHSQTKIVCKNCALNLCYPTGGKARLIKGCKFSR- >UniRef50_A0RY94(8-56:224) Ribosomal protein S27E n=1 Tax=Cenarchaeum symbiosum RepID=A0RY94_CENSY E=2e-13 s/c=1.57 id=46% cov=61% ------------------------VPEPTSRFVKIECESCGSPTIVYSMAKSAVNCRFCGNLLAEPAGGKAVL--------- >UniRef50_A9A5Z8(2-61:65) Ribosomal protein S27E n=2 Tax=marine archaeal group 1 RepID=A9A5Z8_NITMS E=1e-11 s/c=1.18 id=36% cov=67% -------------------KKDHVeIPKPSSKFQKVNCNECGELQIVYSHASTQVACNSCGNAIAEATGSKAKI--------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * G 1 * * * * * 0 * * * * * * * * * * * * * * 1 0 * * * * * * 1000 0 0 F 2 * * * * 1000 * * * * 1000 * * * * * * * * * * 2 0 * * * * * * 1470 0 0 F 3 * * * * 2798 * * 2758 * 1235 1818 * * * * * * * * * 3 0 * * * * * * 2286 0 0 D 4 2277 * 1313 1849 * * * * * * * 3138 * * * * * * * * 4 0 * * * * * * 2274 0 0 S 5 * * * * * * * 3591 * * * * * * 3053 1870 * 935 * * 5 0 * * * * * * 2537 0 0 D 6 * * 0 * * * * * * * * * * * * * * * * * 6 0 * * * * * * 2666 0 0 L 7 * * * * 4344 * * 3239 * 243 * * * * * * * * * * 7 0 * * * * * * 2666 0 0 S 8 2913 * * * * * * 4910 * 565 * * * * * 2663 * * * * 8 0 * * * * * * 2697 0 0 Y 9 * * * * 2913 * 1630 * * * * 1486 * 3812 * * * * * 3110 9 0 * * * * * * 2697 0 0 P 10 * * * * * * * * * * * * 107 * * * 3812 * * * 10 0 * * * * * * 2697 0 0 T 11 3812 * 4135 4265 * * * 3745 * 4481 * * 4642 * * 1958 1311 * * * 11 0 * * * * * * 2697 0 0 V 12 2173 * * * 4910 * * * 3336 4912 * * 2026 * 2913 * * 2645 * 3745 12 0 * * * * * * 2697 0 0 R 13 2488 * 5025 1075 * * * * 2666 * * * * 4335 4185 * * 4208 * * 13 0 * * * * * * 2850 0 0 T 14 * * * 1943 * * * * 2483 2856 * * * 3496 4335 2809 2815 * * * 14 0 * * * * * * 2850 0 0 E 15 * * * 284 * * * * 4370 * * * * * * * * 2937 * * 15 0 * * * * * * 2850 0 0 R 16 1651 * * * * 2937 * 4335 2042 * * * * 3004 2900 * * * * * 16 0 * * * * * * 2850 0 0 M 17 * * * * * * 3473 * 2214 * 2993 * * 3970 1404 2975 * * * * 17 0 * * * * * * 2864 0 0 K 18 3986 4435 * * * * 4516 * 794 * * * * 5531 5000 * 2203 * * * 18 64 * 4516 * * * * 2864 0 0 H 19 * * * * * * 498 * * * * 2663 * * * * * * * 2901 19 0 * * * * 0 * 2874 0 1000 K 20 * * * * * * * * 0 * * * * * * * * * * * 20 0 * * * * * * 2936 0 0 R 21 * * * * 4010 * * * 872 1799 4071 * * * 4485 * * * * * 21 0 * * * * * * 2936 0 0 R 22 * * 2464 * * * * * 605 * 3819 * * * 3465 * * * * * 22 0 * * * * * * 3049 0 0 R 23 * * * * * * 2545 * * * * 4198 * * 765 * 2924 4214 * * 23 0 * * * * * * 3049 0 0 L 24 * * * * * * * 4020 * 214 * * * * * * * 3719 * * 24 114 3719 * 0 * * * 3049 1000 0 V 25 * * * * * * * 1483 * * * * * * * * * 895 * 3255 25 0 * * * * * * 3280 0 0 Q 26 * * * * * * * * * * * * 1133 1187 3255 * * * * * 26 0 * * * * * * 3280 0 0 G 27 3872 * * 2746 * 3444 4416 * 3836 * 4435 2428 * 4416 * 1975 4623 * * * 27 0 * * * * * * 3358 0 0 P 28 * * * * * 2722 * * * * * * 237 * * * * * * * 28 0 * * * * * * 3358 0 0 N 29 * * * * * * * * * * * 871 * * 1900 3049 3954 * * * 29 0 * * * * * * 3597 0 0 S 30 * * * * * 2660 * * * * * * * * * 248 * * * * 30 0 * * * * * * 3629 0 0 Y 31 * * * 4007 3225 * 2931 * 3007 * * 4486 * * 3378 5027 * * * 1308 31 0 * * * * * * 3629 0 0 F 32 * * * * 124 * * * * * * * * * * * * * * 3600 32 0 * * * * * * 3882 0 0 M 33 * * * * * * * 2259 * 1987 1550 * * 4501 * 4761 * 3104 * * 33 0 * * * * * * 3882 0 0 D 34 3600 * 1730 3700 * * * * 2032 * * 4369 * * 2939 4121 * * * 4094 34 0 * * * * * * 3882 0 0 V 35 * * * * * * * 2049 * 4121 5561 * * * * * 3600 744 * * 35 0 * * * * * * 3882 0 0 K 36 * * * 4225 * * 4339 4369 852 * * 4501 * 4603 2468 * * 5122 * * 36 0 * * * * * * 3882 0 0 C 37 * 100 * * * * * * * * * * * * * * * * * 3900 37 0 * * * * * * 3882 0 0 P 38 3692 * 4339 4225 * 4094 * 5363 4369 2278 * 3625 1633 5772 4839 5284 * * * * 38 0 * * * * * * 3882 0 0 G 39 * * 2053 4498 * 1487 * * 2656 * * 4368 * 4654 * 3171 * * * * 39 0 * * * * * * 3882 0 0 C 40 * 61 * * * * * * * * * * * * 4596 * * * * * 40 0 * * * * * * 3882 0 0 K 41 * * 4492 3675 3980 1970 * * 2406 5747 * * * 3687 4091 * 4119 * * 2667 41 0 * * * * * * 3882 0 0 N 42 4675 * 4720 3546 * 4119 4091 * 2155 * * 1238 * * * 4224 5717 * * * 42 0 * * * * * * 3882 0 0 I 43 * * * 2448 * * * 1501 4368 3296 * * 4224 5015 * * 3353 2933 * * 43 0 * * * * * * 3882 0 0 T 44 * * * * * * * * * * * 2933 3896 1466 * 5274 1411 4720 * * 44 0 * * * * * * 3882 0 0 V 45 * 4091 * * * * * 1842 * * 4654 3896 * * * * 1798 1900 * * 45 0 * * * * * * 3882 0 0 V 46 4119 4091 * * * * * 1602 * 4337 * * * * * * 3897 1192 * * 46 0 * * * * * * 3882 0 0 Y 47 * * * * 350 * * * * * * * * * * * * * * 2216 47 0 * * * * * * 3882 0 0 S 48 4836 * 3546 * * 4337 * * * * * * * * * 335 4758 * * * 48 0 * * * * * * 3882 0 0 H 49 * * * * * * 733 * 3252 * 4224 4654 * 3896 2908 * * * * * 49 0 * * * * * * 3882 0 0 A 50 789 * * 3896 * * * * * * * * 3503 * * 1912 * * * * 50 0 * * * * * * 3882 0 0 T 51 2656 * * * * * 3234 * 4224 * * 3389 * 1770 * 2612 4422 3599 * * 51 0 * * * * * * 3882 0 0 S 52 * * * * 3599 * * * * * 5161 4337 * * 4675 2184 934 4119 * * 52 0 * * * * * * 3882 0 0 E 53 3793 * 5271 4113 * * * * 3779 * * 4091 3389 3584 * * 2808 1849 3599 5015 53 0 * * * * * * 3882 0 0 V 54 * * * * * * * 2427 3599 * * * * * * * * 451 * * 54 0 * * * * * * 3882 0 0 K 55 4498 * * * 3389 * * 4090 2932 2454 * 3279 * 5015 4256 4091 2877 3225 * * 55 0 * * * * * * 3882 0 0 C 56 * 110 * * * * * * * * * * * * * * * * * 3774 56 0 * * * * * * 3486 0 0 N 57 4302 * 3774 5388 * 5327 * 3804 3260 3100 * 3004 3150 3879 4180 * 5583 2705 * * 57 0 * * * * * * 3486 0 0 G 58 * * 3797 * 4180 1670 * 3239 4517 * * 2951 * * * 3496 * 2387 * * 58 0 * * * * * * 3486 0 0 C 59 * 0 * * * * * * * * * * * * * * * * * * 59 0 * * * * * * 3486 0 0 A 60 3707 * * * * 1032 * * * * * 3726 * 3674 * 2262 3796 * * * 60 0 * * * * * * 3486 0 0 T 61 4057 * 3944 4771 * * * * 3804 4293 * 3060 * 4517 3678 3345 1413 * * * 61 0 * * * * * * 3486 0 0 L 62 3949 * 5391 * * * * 3175 * 2712 * 4293 3365 4390 * * 2251 2046 * * 62 0 * * * * * * 3486 0 0 L 63 * * * * 3774 * * 1989 * 567 * * * * * * * * * * 63 0 * * * * * * 3486 0 0 C 64 1422 1731 * * * 4517 * * * 3944 * * * * * 4390 3797 3361 * * 64 0 * * * * * * 3486 0 0 R 65 * * * 2288 * * * 4390 3170 * * * * 1883 3359 * 2206 * * 4293 65 0 * * * * * * 3486 0 0 P 66 3949 * * * * * * * * * * * 269 * * 3250 * * * * 66 0 * * * * * * 3486 0 0 T 67 4180 * * * * * * * * * * * * * 4638 2869 381 * * * 67 0 * * * * * * 3486 0 0 G 68 * * * * * 60 * * * * * * * * 4613 * * * * * 68 0 * * * * * * 3421 0 0 G 69 * * * * * 96 * * * * * * * * * 3950 * * * * 69 0 * * * * * * 3421 0 0 K 70 * * * 4173 * * * * 296 * * * * * 2940 * * * * * 70 0 * * * * * * 3410 0 0 A 71 584 4039 * * 3641 4624 * 4063 * 4326 * * * * * 4586 * * * * 71 0 * * * * * * 3408 0 0 M 72 4039 * 4091 * * * * * 1131 4063 5000 5012 * * 2946 * * 2540 * * 72 0 * * * * * * 3408 0 0 L 73 * * * * 4015 * * 2009 * 900 * * * * * 3623 * 3779 * * 73 0 * * * * * * 3418 0 0 V 74 3191 * * * * * * 3561 * * * * * * * 1743 1209 3746 * * 74 0 * * * * * * 2650 0 0 T 75 * * 3191 1645 * * * * 2477 * * * 2764 3644 * 3483 3746 * * * 75 0 * * * * * * 2650 0 0 G 76 * * * * * 898 * * * * * 2676 * 1704 * * * * * * 76 0 * * * * * * 2543 0 0 C 77 * 469 * * * * * * * * * * * * * * 3990 2220 * * 77 0 * * * * * * 2543 0 0 G 78 * * * 1430 * 3556 * * 2382 * * * * * * 1507 * * * * 78 150 3343 * 0 * * * 2543 1000 0 F 79 * * * * 349 * * 3106 * * * * * * * * * * * 3343 79 0 * * * * * * 2543 0 0 R 80 * * * * * * * * 2676 * * * * * 427 3327 * * * * 80 0 * * * * * * 2543 0 0 K 81 * * * * * * * 3241 1283 * * * * 3112 1444 * * * * * 81 0 * * * * * * 2393 0 0 K 82 * * * * * * * * 0 * * * * * * * * * * * 82 0 * * 0 * * * 1909 0 0 //